mRNA_P-wetherbeei_contig735.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig735.1.1
Unique NamemRNA_P-wetherbeei_contig735.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig735.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig735contigP-wetherbeei_contig735:2662..7288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2205
Hectar predicted targeting categorysignal peptide
Exons9
Cds size1431
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig735.1.1prot_P-wetherbeei_contig735.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig735 3230..7082 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.6437876-UTR-P-wetherbeei_contig735:2661..32291683186975.6437876-UTR-P-wetherbeei_contig735:2661..3229Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig735 2662..3229 -
1683186975.7373815-UTR-P-wetherbeei_contig735:7082..72881683186975.7373815-UTR-P-wetherbeei_contig735:7082..7288Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig735 7083..7288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.6527488-CDS-P-wetherbeei_contig735:3229..33031683186975.6527488-CDS-P-wetherbeei_contig735:3229..3303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 3230..3303 -
1683186975.6609988-CDS-P-wetherbeei_contig735:3648..37341683186975.6609988-CDS-P-wetherbeei_contig735:3648..3734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 3649..3734 -
1683186975.6690094-CDS-P-wetherbeei_contig735:4118..41861683186975.6690094-CDS-P-wetherbeei_contig735:4118..4186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 4119..4186 -
1683186975.6771896-CDS-P-wetherbeei_contig735:4452..45481683186975.6771896-CDS-P-wetherbeei_contig735:4452..4548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 4453..4548 -
1683186975.685555-CDS-P-wetherbeei_contig735:4803..48551683186975.685555-CDS-P-wetherbeei_contig735:4803..4855Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 4804..4855 -
1683186975.6937547-CDS-P-wetherbeei_contig735:5153..56711683186975.6937547-CDS-P-wetherbeei_contig735:5153..5671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 5154..5671 -
1683186975.708148-CDS-P-wetherbeei_contig735:6263..65221683186975.708148-CDS-P-wetherbeei_contig735:6263..6522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 6264..6522 -
1683186975.717659-CDS-P-wetherbeei_contig735:6703..69061683186975.717659-CDS-P-wetherbeei_contig735:6703..6906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 6704..6906 -
1683186975.7288778-CDS-P-wetherbeei_contig735:7007..70821683186975.7288778-CDS-P-wetherbeei_contig735:7007..7082Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig735 7008..7082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig735.1.1

>prot_P-wetherbeei_contig735.1.1 ID=prot_P-wetherbeei_contig735.1.1|Name=mRNA_P-wetherbeei_contig735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=477bp
MMGLPWPLRFSFFISIGFVYARTLTLVVQQFEDSDGKGDESRRWEAEAQL
TRGPSLRAALETAMASHCDEDIVVAMPAGVHTVRCETPIHVTCLRSLVVR
GGGPEGKIMLRCAGANPADSGGGSGMDRAVGGIHGDGNFGGDSGGGRGRG
GNFDGDEKDFALLAVVDVSEVLFENISFQGPAGGTVRWNRLIRNNCAVCT
VAAVRCTLDGDPIAGSSSSGTSPARSYDPGGPNAGDAGGNTGAAGGEMNN
GGGGTGGCGMRSGDGGADSVGAKSESAIGVGDGAARRITRGSGGRYYSGG
YGIPLGNLTAAARHLARQTGELPPLLAVSGHAGRAPSPATVHELPPTCAS
DRPLPSQFHRRLATASPTTQMSVSAYENTDFTGWVATTTGPNTWDLAGTA
YDNSLSVLVISNGGSLAAVTLYDTYPGGSSITIVGVGTYYMMDYGWNDKT
SAVVLFYSTAAPTPVPTPNPTAVPTA*
back to top

mRNA from alignment at P-wetherbeei_contig735:2662..7288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig735.1.1 ID=mRNA_P-wetherbeei_contig735.1.1|Name=mRNA_P-wetherbeei_contig735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4627bp|location=Sequence derived from alignment at P-wetherbeei_contig735:2662..7288- (Phaeothamnion wetherbeei SAG_119_79)
CCCCCGCGTCTGGAGTTGGAATTCCGGGGAAAACGGAGCGTTTGCTCTCA
GATATCTCAAGTACCGGTTGTTCAAGCCTTTAAAACTTTGTGACGGGCAT
TGCTAGAATAAACGGTTTTGGAGAGAGGAGCATGGACTTTCTCTCCGCCT
GAAACACTCTGGTCGCTGCATTTTTCCCACTATATGTACGCGATCACGTC
AGTTGTATGATGGGGCTGCCGTGGCCGCTCCGCTTCAGCTTCTTCATCTC
TATCGGGTTTGTTTACGCTCGAACGCTCACTGTAAGTTCTTCTCGAGAAA
TTGCTCAAGATACCCTTAAATCAGTTAATCACAACATTTCTTCTTCCTCG
CGTTCACCCTTCCCCTCCTCGCCGAGTTTCAGTTGGTCGTGCAGCAATTC
GAAGACTCTGACGGCAAGGGAGATGAGTCCCGACGGTGGGAGGCTGAGGC
ACAGCTCACGCGCGGGCCCTCCCTGCGTGCCGCGCTCGAGACCGCAATGG
CGAGCCACTGTGATGAAGACATCGTCGTCGCGATGCCGGCCGGCGTTCAC
ACGGTCCGATGCGAGACGCCGATCCATGTGACTTGGTGAGGCAGGGATGC
TGGCCGACATCGCACTATCCCCCGCATTATCTCCTTTTCCGCGTTTGCCC
TTTTCGTCTTCGGTTCAATATGTCTTCGTCTTAAATGGGGAATGACGCGT
CGTCAGTACTCCGGTTTGAGGGAGCATATTCGGACGTATCCCCCTTCTTC
GTCCTCCCATCCACAGCTTGAGGTCGCTGGTCGTTCGCGGCGGCGGCCCT
GAAGGGAAAATCATGCTAAGGTGCGCCGGCGCGAATCCTGCGGACAGCGG
CGGTGGGAGTGGCATGGACCGTGCGGTCGGAGGCATCCACGGCGATGGGA
ATTTCGGCGGTGACAGCGGTGGCGGCCGCGGGCGTGGCGGCAATTTTGAC
GGCGATGAAAAGGACTTTGCGCTCCTGGCGGTTGTGGATGTCTCGGAGGT
CCTTTTCGAGAACATTTCTTTCCAGGTGAGATCTGGCGATATTTGGCCGA
ATGAAGTGCCTGTGGAAAAAGGCGGCCTTTCTCCGCAAAAGATCCTTGCA
GGCGCACGTGAGCGCCTGGCGTTGTCCCGGTCGCTTCCTGGTTGATACTT
TTTGCTCAGGATTCGCATTTGGCTGTACAGCCCAGCCTTGCTTCTACCCG
ATTTTGCTGGCTTATCAAGCTAAGGCTTTTCGGTTCAGATTCAAGGACTC
TTTTGGAGGGTTATCTCTTTCGGCTTCCGTCCGCGATGTTTTTGGCAGCA
TACGCCATGCACCAATTGCATGTGCCGCACGAGCGATCCGATAATCCCGC
AATCACCCCGCTGCCGCTGCCGCCTCTGTAGCCAATCCCACTATGCCCCC
TCTGCCTTCATGGCGTAACCGCTCCCATCACCGCTGCGGTTCTTCTGCTG
CCCCCGCCGCCGCCACCGGCTGTCACTTGCCGCTGCGGCGATACTTGTTC
GCTTGCTTACCTCACACTGCCGCCTGCTGGATTTGATTCGCTTCTGTCGC
CGCTACCTCCACCACTGCTCATCTTCTTGCCGTCATTGACTGTCCCGGCC
TTACTCTCTGTGTGCAGGGTCCGGCTGGCGGCACGGTGCGGTGGAACAGG
CTGATACGAAATAACTGCGCAGTTTGCACGGTGGCTGCTGTCCGGTGCAC
GTTGGACGGAGATCCGATTGCCGGCAGCAGCAGCAGCGGCACCAGTCCTG
CGCGCAGTTATGATCCCGGCGGGCCTAACGCCGGAGATGCTGGTGGGAAT
ACCGGTGCGGCTGGCGGCGAGATGAACAACGGTGGCGGCGGTACCGGCGG
CTGCGGGATGAGAAGCGGTGACGGCGGCGCCGACAGCGTCGGCGCCAAAA
GCGAATCTGCAATTGGCGTCGGCGACGGTGCAGCCCGCAGAATCACCCGC
GGCAGTGGAGGTCGGTACTACAGCGGCGGTTACGGCATTCCGCTCGGAAA
CCTCACCGCAGCAGCGCGGCACCTCGCGCGGCAGACCGGAGAACTGCCGC
CGTTGCTCGCCGTTTCTGGTCACGCCGGTAGGGCTCCATCGCCGGCAACG
GTGCACGAACTGCCCCCGACCTGTGCTTCGGACAGGCGAGCTGGGAAAGT
AGACAATGAGGGCCATCTACCGTCTTTCGGAATCACCATGGACCGACAGC
GACCGTCTCTCCGTTTTTTTCTTGACGGCAGCAGGAAAGAAGTACCTGCG
AATATGATTGCAAATAGTGTGCTGGGGGCTGGCTGCTGCCGTCCGCCGAA
CCGAGCGCGTCTTCTCCCTTACTTGAAACCGTCTTGCAACCATGACATTT
TCCGTCACTCTCGAAAACGTCCCTCTTCCACCACCGCTGCCGTTGCCACC
ACCGCCGCCGCCGCTGTCATCGTCGTGTGGCAGACCACTGCCAAGCCAAT
TTCATCGCCGCCTCGCGACTGCGAGCCCGACAACTGTGCGATGTCATATT
CCCGCTTGAACCCAGCTCGCGCATAACAGGATTTACGCTTGTGTCTCTTG
AAGGGTTGGAGGGTTGGAATACTTGGCAGGCAGCTCCATCGCTTTTCGAC
GTGCCATGCGACTTCCATACATGTTGAAACCCGCCCGACAGGAGCGGTCC
CACCCCAGTCCTGCGCTTACTCTCCGCGGTACTTTCCGCGGTATTTAGCC
TCGATTTCTTCTATTTTTTCTCCATCCTTGTTCTCGGCAGCAAATGTCAG
TTTCGGCGTACGAAAACACCGACTTTACCGGCTGGGTGGCCACCACGACT
GGGCCAAATACTTGGGACCTTGCGGGGACCGCCTACGTGAGTTTTTTCAA
CCCGCTCGAGCTGGTCTGGCATAGTAATTAGCCGTATAGAAAAAAGCTTC
TTCTTAAACGAAGGTTCAGGTTTTGCTACGTTCTATTCTAAACGAGCACG
GGAGTCGCTCAGCTGCGCATGTCCGCGGAAAATAACAGCTGTGAAAAATG
TTCTCGGCAAAGAACAGCTGTGAAAAGGCAGGCAGGCATTGAAGCCATGG
AGGAGCCTCTGGACCGCCGCTGTTCTCTCTTTCTTACGGAATTCCGCCGC
AGGACAATTCCCTGAGCGTACTGGTGATATCAAACGGAGGATCACTGGCT
GCCGTCACGCTCTACGACACGTGAGTCGCAGGCCTGTTGGCTTATTCTTT
GGACGAGGCTCAATTCCATTCATCTGCGCGTTCGCCGGTAAACGGGGGCC
GTTAGCTTGTTTGGGCACCGAATTCGTGGGGCCACCTTCGAGTGGAGGAA
GCTGGGTCTTGTCATTGCCGAAGACGTGCGCCATGTTTTCGGTAGCTTCG
TCGACGGAGCCCAATGGATGGTCCGTTCTCCAGCTGAGTGCCGAGCAAGC
AGATGTTAGGTTCTTCCGGCAACTAGGTACAGATTGCAGCTCGAAGCGCA
CCGTCTGGTTCCTCCCTTTTTCGTCGCTTTCGTGCCGCGCTCCGCCGATT
TCTTCCTCCCGTCCCGGCCCGTGCAATCGTTTTCATTTGATCATACATAA
CTAGATACCCGGGGGGATCCTCGATTACAATCGTCGGAGTCGGGACATAT
TACATGATGGACTATGGTTGGAACGACAAAACCAGCGCTGGTGAGTTTTC
TTAACATGCTAGTCTTGGCTCCAGTGCTGGGTTCGCCCGCTTGCCGCTTG
GCGGCGGAAATGGCAGGTGGGGATAACTTTCTGCGGACCGTGACGCTTTT
CTCCGTCAGGTTTTTTTTGCCCGTGATGGCCCTGAATGCCGCCATCTGTT
TACACAAAGGCGACCAAGGAGAAAAATGCAACCTGCCTTGCAACATGCAA
CTTTGATTTTGTAATGTGCGAAAGCTGTCCGCTTCGTGCTTTCTTTTCTA
CCGCGTGTCGTGCCTTCTTCCTTTTTGTCGTCACTCTCACGCTTAGCTCG
TTTCTCGTCTCTTTCTCCCTCTTACTGCGCCACAGTCGTCCTTTTCTACT
CAACGGCGGCGCCGACGCCTGTGCCAACACCGAATCCGACAGCAGTGCCA
ACAGCGTGAGGACAAGAATGAGGAAAAAGAGGGAACGAGAAGCGGAGTGA
GGGTGTATTTCGGCAGCCATGGTGTTTCAGCACCTTTTTTGCGTTCTCGC
TCGATCTCCTGGAGGCACGCGCGGCAGGAGGTGCAGAGATCAGCCTCCCG
CTAGCGTAGTTCGCTAGTTTGTGTCTCTTGCCGCCATCTCCGCACTCTTG
CCCCTTGTCGCTACTGCAGTGCATTTGGTCGATGTGTACATGCGCTCGTG
CGAGTCCCGGCTGCAACTGACGGTCTGGTCACCTTCGACTGTTGCCGCCT
CGCTTCAATCGCTTCCGTCTGACGTCTCTCTTCGCCCGCATGCACGCCGG
CATTGATCGATCCCCTGTCGCATTGTACCCATCGGTGATGGTTGCTCAAA
CGGGATCCTCACTCCTCCCTTGCCTGCTCTCTCTGCACGTTCCGTGCCGC
CGCCATTCAAACACCCGGCCAACCTCTTTCTCCCGGCAGGACGCCGACGG
CAATGCCTACAGCAATTCCCACAGCAATTCCCACAGCAATTCCCACAGCG
ATTCCCACAGCGATTCCTACAACAATT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig735:2662..7288-

>mRNA_P-wetherbeei_contig735.1.1 ID=mRNA_P-wetherbeei_contig735.1.1|Name=mRNA_P-wetherbeei_contig735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1431bp|location=Sequence derived from alignment at P-wetherbeei_contig735:2662..7288- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGGGCTGCCGTGGCCGCTCCGCTTCAGCTTCTTCATCTCTATCGG
GTTTGTTTACGCTCGAACGCTCACTTTGGTCGTGCAGCAATTCGAAGACT
CTGACGGCAAGGGAGATGAGTCCCGACGGTGGGAGGCTGAGGCACAGCTC
ACGCGCGGGCCCTCCCTGCGTGCCGCGCTCGAGACCGCAATGGCGAGCCA
CTGTGATGAAGACATCGTCGTCGCGATGCCGGCCGGCGTTCACACGGTCC
GATGCGAGACGCCGATCCATGTGACTTGCTTGAGGTCGCTGGTCGTTCGC
GGCGGCGGCCCTGAAGGGAAAATCATGCTAAGGTGCGCCGGCGCGAATCC
TGCGGACAGCGGCGGTGGGAGTGGCATGGACCGTGCGGTCGGAGGCATCC
ACGGCGATGGGAATTTCGGCGGTGACAGCGGTGGCGGCCGCGGGCGTGGC
GGCAATTTTGACGGCGATGAAAAGGACTTTGCGCTCCTGGCGGTTGTGGA
TGTCTCGGAGGTCCTTTTCGAGAACATTTCTTTCCAGGGTCCGGCTGGCG
GCACGGTGCGGTGGAACAGGCTGATACGAAATAACTGCGCAGTTTGCACG
GTGGCTGCTGTCCGGTGCACGTTGGACGGAGATCCGATTGCCGGCAGCAG
CAGCAGCGGCACCAGTCCTGCGCGCAGTTATGATCCCGGCGGGCCTAACG
CCGGAGATGCTGGTGGGAATACCGGTGCGGCTGGCGGCGAGATGAACAAC
GGTGGCGGCGGTACCGGCGGCTGCGGGATGAGAAGCGGTGACGGCGGCGC
CGACAGCGTCGGCGCCAAAAGCGAATCTGCAATTGGCGTCGGCGACGGTG
CAGCCCGCAGAATCACCCGCGGCAGTGGAGGTCGGTACTACAGCGGCGGT
TACGGCATTCCGCTCGGAAACCTCACCGCAGCAGCGCGGCACCTCGCGCG
GCAGACCGGAGAACTGCCGCCGTTGCTCGCCGTTTCTGGTCACGCCGGTA
GGGCTCCATCGCCGGCAACGGTGCACGAACTGCCCCCGACCTGTGCTTCG
GACAGACCACTGCCAAGCCAATTTCATCGCCGCCTCGCGACTGCGAGCCC
GACAACTCAAATGTCAGTTTCGGCGTACGAAAACACCGACTTTACCGGCT
GGGTGGCCACCACGACTGGGCCAAATACTTGGGACCTTGCGGGGACCGCC
TACGACAATTCCCTGAGCGTACTGGTGATATCAAACGGAGGATCACTGGC
TGCCGTCACGCTCTACGACACATACCCGGGGGGATCCTCGATTACAATCG
TCGGAGTCGGGACATATTACATGATGGACTATGGTTGGAACGACAAAACC
AGCGCTGTCGTCCTTTTCTACTCAACGGCGGCGCCGACGCCTGTGCCAAC
ACCGAATCCGACAGCAGTGCCAACAGCGTGA
back to top