mRNA_P-wetherbeei_contig7344.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7344.2.1
Unique NamemRNA_P-wetherbeei_contig7344.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7344.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7344contigP-wetherbeei_contig7344:2258..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size253
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.2061894-UTR-P-wetherbeei_contig7344:2257..22811683186975.2061894-UTR-P-wetherbeei_contig7344:2257..2281Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7344 2258..2281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.2164667-CDS-P-wetherbeei_contig7344:2281..22941683186975.2164667-CDS-P-wetherbeei_contig7344:2281..2294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7344 2282..2294 +
1683186975.2271347-CDS-P-wetherbeei_contig7344:2541..27561683186975.2271347-CDS-P-wetherbeei_contig7344:2541..2756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7344 2542..2756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7344.2.1prot_P-wetherbeei_contig7344.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7344 2282..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7344.2.1

>prot_P-wetherbeei_contig7344.2.1 ID=prot_P-wetherbeei_contig7344.2.1|Name=mRNA_P-wetherbeei_contig7344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MPPSARRLSPTSASTPSCATSGASRHHRPAATAAHVEASGTVLLLRSSSH
TSPASPAGRMTGRCAPSCMAAVTSHR
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mRNA from alignment at P-wetherbeei_contig7344:2258..2756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7344.2.1 ID=mRNA_P-wetherbeei_contig7344.2.1|Name=mRNA_P-wetherbeei_contig7344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=499bp|location=Sequence derived from alignment at P-wetherbeei_contig7344:2258..2756+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTTGGAGAGTGGGAGGACTATCATGCCGCCCTCAGGTCAGTCAAAGTC
TCTTCCTTTTTTTGGTCCTGGCTGTTCGATTCGAGCGTTTTTTTATAGAG
CATTTTGGAACGTCCTCCATCCTTGTTTTGGGCGATGGTTGGCGCATTCT
CCACTCAGAGCATTCCTCGTTGACGGGGTCATGGATTGTTTGCTCGACAC
TCAACGCGGCAGAATTAGTCTCTGTGCAGATGTCCTACCTGCTGCTTCTC
CTGCCCGCCCATGCTTGAATCAAAACTACTGTAGCGCGACGATTGAGTCC
GACGAGCGCTTCGACGCCGTCGTGCGCGACCTCTGGAGCCTCTCGGCACC
ATCGTCCGGCCGCCACGGCGGCCCATGTGGAGGCGAGCGGCACTGTTCTT
CTTCTGCGCAGCAGCAGTCACACGTCGCCGGCATCGCCCGCCGGCAGGAT
GACAGGGCGATGCGCGCCATCATGTATGGCGGCGGTGACGAGCCATCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7344:2258..2756+

>mRNA_P-wetherbeei_contig7344.2.1 ID=mRNA_P-wetherbeei_contig7344.2.1|Name=mRNA_P-wetherbeei_contig7344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig7344:2258..2756+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCCTCAGCGCGACGATTGAGTCCGACGAGCGCTTCGACGCCGTC
GTGCGCGACCTCTGGAGCCTCTCGGCACCATCGTCCGGCCGCCACGGCGG
CCCATGTGGAGGCGAGCGGCACTGTTCTTCTTCTGCGCAGCAGCAGTCAC
ACGTCGCCGGCATCGCCCGCCGGCAGGATGACAGGGCGATGCGCGCCATC
ATGTATGGCGGCGGTGACGAGCCATCGT
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