mRNA_P-wetherbeei_contig7344.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7344.1.1
Unique NamemRNA_P-wetherbeei_contig7344.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7344.1.1 vs. uniprot
Match: A0A835Y874_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y874_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 3.920e-6
Identity = 44/144 (30.56%), Postives = 68/144 (47.22%), Query Frame = 2 
Query:   65 LRRRGSCSGFAPLREALRGEDLLHRGSLNWDQFCSAFEHAGISLARVDMRTFFEQFAE--GGTVSYEPLFETLRGRPSRQRLVQIRAVFVMLDDDGDGVVTLAQIADCLKPSGHPDVRLGVVGAGELKRWVLSQLA---EAAGG 481
            L+ RG+  G   +    R  D      L++++F  A     + ++  D +  F  F +   G +S++ L   LRG  + +RL  ++  F +LD DG+G VTLA +      S HPDV  G     +  R VL +     EAAGG
Sbjct:  123 LKLRGT-HGIISIGRKFRSMDDSGDRKLSYEEFKKALVEMKLHMSEADTQRVFRGFDKDCSGYISFDELLLGLRGELTERRLDMVKRCFKVLDKDGNGTVTLADLERRYDTSRHPDVIAGT----KTPRMVLMEFLGTFEAAGG 261
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BLAST of mRNA_P-wetherbeei_contig7344.1.1 vs. uniprot
Match: A0A6S9H5U9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H5U9_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 3.730e-5
Identity = 34/112 (30.36%), Postives = 51/112 (45.54%), Query Frame = 2 
Query:   89 GFAPLREALRGEDLLHRGSLNWDQFCSAFEHAGISLARVDMRTFFEQFAEGG--TVSYEPLFETLRGRPSRQRLVQIRAVFVMLDDDGDGVVTLAQIADCLKPSGHPDVRLG 418
            G   L  A R  D     SL+   F     + G+ L   ++ T F  F   G   + YE   + +    + +RL  +R  F +LD DG G +T+A +A+    + HPDVR G
Sbjct:   30 GIRGLAIAFRNADFNGNKSLDRSDFEEVLSNCGLFLKSPEITTLFRYFDVNGDGNLGYEEFLKGMAPPLNDRRLRLVRRAFDLLDVDGSGELTVADLAEKFVVTDHPDVRRG 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7344.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Y874_9CHLO3.920e-630.56Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A6S9H5U9_HETAK3.730e-530.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7344contigP-wetherbeei_contig7344:220..940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3055.EDP03173
PFAMsEF-hand_5
Model size562
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.75e-11
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,380JS@33090|Viridiplantae,34MA3@3041|Chlorophyta
Descriptionprotein serine/threonine kinase activity
Cds size540
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.2567353-UTR-P-wetherbeei_contig7344:219..2411683186975.2567353-UTR-P-wetherbeei_contig7344:219..241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7344 220..241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186975.272941-CDS-P-wetherbeei_contig7344:241..4891683186975.272941-CDS-P-wetherbeei_contig7344:241..489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7344 242..489 +
1683186975.2827861-CDS-P-wetherbeei_contig7344:648..9401683186975.2827861-CDS-P-wetherbeei_contig7344:648..940Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7344 649..940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7344.1.1prot_P-wetherbeei_contig7344.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7344 242..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7344.1.1

>prot_P-wetherbeei_contig7344.1.1 ID=prot_P-wetherbeei_contig7344.1.1|Name=mRNA_P-wetherbeei_contig7344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MAPHELLRPHIVDCLRRRGSCSGFAPLREALRGEDLLHRGSLNWDQFCSA
FEHAGISLARVDMRTFFEQFAEGGTVSYEPLFETLRGRPSRQRLVQIRAV
FVMLDDDGDGVVTLAQIADCLKPSGHPDVRLGVVGAGELKRWVLSQLAEA
AGGAASLGMDAWIEFQNAITAHMDDAQFT*
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mRNA from alignment at P-wetherbeei_contig7344:220..940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7344.1.1 ID=mRNA_P-wetherbeei_contig7344.1.1|Name=mRNA_P-wetherbeei_contig7344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=721bp|location=Sequence derived from alignment at P-wetherbeei_contig7344:220..940+ (Phaeothamnion wetherbeei SAG_119_79)
GACAAAGAAAGGTAGGGAGAATATGGCCCCTCATGAGCTCTTACGGCCTC
ACATCGTCGACTGCCTTCGCCGCCGTGGTAGCTGCTCGGGGTTCGCGCCA
CTCCGAGAGGCCCTGCGAGGCGAAGACCTACTTCACCGAGGGTCCCTCAA
TTGGGACCAATTCTGCTCCGCTTTTGAGCATGCTGGTATCAGCCTAGCGA
GAGTGGACATGCGAACGTTTTTTGAGCAGTTCGCAGAAGGCGGCACCGTC
TCATACGAGCCGCTCTTCGAGTAAGCTTTTGTGTGAACGGGTTTTGCCTC
TTTGGATCTTGCTAGCTACTAGAGACCCCGCCGCCGCGCGAACCATCCTC
CTTCCCTAGTAGTGAAAGCCCTAACGCGACTCTGTGCAACCCCATCCAAC
CCTCGCGCCGCCAAACTCCTCTCTCGCAGGACGCTGCGCGGGCGTCCATC
CCGCCAGCGCCTCGTCCAGATCCGCGCCGTCTTCGTCATGCTCGACGACG
ACGGCGATGGAGTCGTCACGCTCGCCCAGATCGCCGACTGCCTCAAGCCG
TCGGGCCACCCCGACGTCCGTCTCGGGGTCGTCGGCGCTGGCGAGCTCAA
GCGGTGGGTGCTCTCGCAGCTGGCAGAGGCCGCCGGGGGAGCGGCGAGCC
TCGGGATGGACGCATGGATCGAATTCCAGAACGCAATTACGGCGCACATG
GACGACGCCCAGTTCACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7344:220..940+

>mRNA_P-wetherbeei_contig7344.1.1 ID=mRNA_P-wetherbeei_contig7344.1.1|Name=mRNA_P-wetherbeei_contig7344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig7344:220..940+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCCTCATGAGCTCTTACGGCCTCACATCGTCGACTGCCTTCGCCG
CCGTGGTAGCTGCTCGGGGTTCGCGCCACTCCGAGAGGCCCTGCGAGGCG
AAGACCTACTTCACCGAGGGTCCCTCAATTGGGACCAATTCTGCTCCGCT
TTTGAGCATGCTGGTATCAGCCTAGCGAGAGTGGACATGCGAACGTTTTT
TGAGCAGTTCGCAGAAGGCGGCACCGTCTCATACGAGCCGCTCTTCGAGA
CGCTGCGCGGGCGTCCATCCCGCCAGCGCCTCGTCCAGATCCGCGCCGTC
TTCGTCATGCTCGACGACGACGGCGATGGAGTCGTCACGCTCGCCCAGAT
CGCCGACTGCCTCAAGCCGTCGGGCCACCCCGACGTCCGTCTCGGGGTCG
TCGGCGCTGGCGAGCTCAAGCGGTGGGTGCTCTCGCAGCTGGCAGAGGCC
GCCGGGGGAGCGGCGAGCCTCGGGATGGACGCATGGATCGAATTCCAGAA
CGCAATTACGGCGCACATGGACGACGCCCAGTTCACGTGA
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