mRNA_P-wetherbeei_contig7340.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7340.1.1
Unique NamemRNA_P-wetherbeei_contig7340.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7340.1.1 vs. uniprot
Match: D8LPS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.930e-29
Identity = 93/226 (41.15%), Postives = 117/226 (51.77%), Query Frame = 1 
Query:    1 GTTVFYGSTITLQAHHGGHLNFTPNQAMQASATGPRPNALLTIWDIYDPEAVAPVRPAGISAHDSAARYGDFLLLQVGRHEIMGTSLVVR---------HGADSSGGXXV---AGGRTXXXXXXXXXXXXXXXXXXXXGVAKRNAAAAMGS----------PIAINFRAGNMEKARHIGRWQVLNAKAGDAAKGQEVCHGDQIVLQSCAWTCLASSGPASAVLVAC 612
            G+T+ YGSTITLQA HGG L F      QASA G +PNALLT+W++ D ++  PVR            YGD LLLQ+GRHE+MG+SL++          H +  SGG      AGG T            XXXXXXXX                       P+A+ FR  NM+KA+H GRW + +    +A +G EVCH D++VL    W  LAS  PA A L  C
Sbjct:  369 GSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVR------------YGDVLLLQMGRHEVMGSSLIMHKEPETPGSTHSSKRSGGVGSQASAGGVTGEQQTEDATRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAVPFRGKNMDKAKHTGRWVIFHKDDPEATQGSEVCHLDRVVLMQ-TWLSLASDRPADACLKQC 581
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BLAST of mRNA_P-wetherbeei_contig7340.1.1 vs. uniprot
Match: A0A7S2HDC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDC1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.770e-8
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   10 VFYGSTITLQAHHGGHLNFTPNQAMQASATGPRPNALLTIWDIYDPEAVAPVRPAGISAHDSAARYGDFLLLQVGRHEIMGTSLVV 267
            ++YGSTI+LQAHHG  L    ++  +ASA    P+A  T+W++ +      +   G+       RYGD + LQ GR+EI+G+S ++
Sbjct:    3 IYYGSTISLQAHHGNFLCMNSSRNCEASAVKNEPHAQFTVWNVKN------LSGTGVM------RYGDSVWLQCGRYEILGSSFMM 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7340.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPS8_ECTSI3.930e-2941.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2HDC1_9STRA3.770e-837.21Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7340contigP-wetherbeei_contig7340:1687..2792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPS8
Model size612
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.45e-30
EggNOG OGs2CIRK@1|root,2SVXF@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002320.1
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186974.9990647-CDS-P-wetherbeei_contig7340:1686..17581683186974.9990647-CDS-P-wetherbeei_contig7340:1686..1758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7340 1687..1758 -
1683186975.010371-CDS-P-wetherbeei_contig7340:2000..22601683186975.010371-CDS-P-wetherbeei_contig7340:2000..2260Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7340 2001..2260 -
1683186975.0204391-CDS-P-wetherbeei_contig7340:2416..25181683186975.0204391-CDS-P-wetherbeei_contig7340:2416..2518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7340 2417..2518 -
1683186975.030619-CDS-P-wetherbeei_contig7340:2614..27921683186975.030619-CDS-P-wetherbeei_contig7340:2614..2792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7340 2615..2792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7340.1.1prot_P-wetherbeei_contig7340.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7340 1687..2792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7340.1.1

>prot_P-wetherbeei_contig7340.1.1 ID=prot_P-wetherbeei_contig7340.1.1|Name=mRNA_P-wetherbeei_contig7340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp
GTTVFYGSTITLQAHHGGHLNFTPNQAMQASATGPRPNALLTIWDIYDPE
AVAPVRPAGISAHDSAARYGDFLLLQVGRHEIMGTSLVVRHGADSSGGGG
VAGGRTDNDSGDGGGRSSVGATNSAGGVAKRNAAAAMGSPIAINFRAGNM
EKARHIGRWQVLNAKAGDAAKGQEVCHGDQIVLQSCAWTCLASSGPASAV
LVAC
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mRNA from alignment at P-wetherbeei_contig7340:1687..2792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7340.1.1 ID=mRNA_P-wetherbeei_contig7340.1.1|Name=mRNA_P-wetherbeei_contig7340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig7340:1687..2792- (Phaeothamnion wetherbeei SAG_119_79)
GGCACGACCGTCTTCTACGGGTCGACCATCACACTGCAGGCCCACCACGG
CGGCCACCTCAACTTCACGCCCAACCAGGCGATGCAAGCGTCGGCGACGG
GGCCTCGCCCAAACGCCCTGCTCACCATTTGGGACATCTACGACCCCGAG
GCGGTCGCCCCCGTCAGGCCAGCCGGCAGTGACAGGCGGCGGCATGCCCG
CTTGTCCACCCGCCCGTGCTTGCCCCTTCTCTTTGCTACCCCGACTGTTG
ACTGCTTCGTTCTTCTAACGCTAGTTTCCGCCCACGACTCGGCTGCCAGG
TATGGGGACTTCCTGCTGCTCCAAGTCGGCCGGCATGAGATCATGGGAAC
AAGTCTTGTCGTGCGCCACGGAGCCGGTGAGCAATAAAGCTTCCGATAAT
TTCTGACAGTCGCCTTCTTTTCTTTTCCGAAACGTTATTACGTTTGTATG
TTTAATCCTTCGGGTTTTGTCGCCTTCACATTTGGGTCGAACACGTGTCG
CTGCGCTCGCTTTTCGCCGCCTTTGGCATCAGACAGCAGTGGCGGAGGCG
GCGTTGCTGGCGGCCGGACCGACAACGACAGCGGCGACGGCGGCGGCCGA
AGCAGCGTCGGCGCTACCAACAGCGCTGGCGGCGTCGCGAAGCGCAACGC
GGCGGCGGCCATGGGCTCTCCCATAGCCATCAACTTCCGTGCCGGGAACA
TGGAAAAGGCACGGCACATCGGGCGCTGGCAGGTGCTCAACGCAAAAGCC
GGAGACGCCGCCAAAGGCCAAGAGGTCTGCCACGGCGATCAGGTCAGTTT
GGCGGGTCCGTTTTCTCTCGGCTGCTTGCTCTCCACGCCTTCTTCCCTTT
ATGTGACCTTTCCCTGCCTTTTATGTGTTGTTTCCCTCTGATGCCCTCTT
TGTCTTAATTCCAAGGCACTCTATTTTTGTCTACCGATGCGCCTTTAAAG
CGACAGTCTCTTAATGTGCCGCCAATGCCGCTGTCGATTCCATAAACACT
GATCCGCATGCGTCCTTCTGCCTTTTAAAAACAGATCGTTTTGCAGAGCT
GCGCGTGGACTTGCCTGGCCAGCAGCGGGCCGGCTTCGGCCGTGCTGGTC
GCTTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7340:1687..2792-

>mRNA_P-wetherbeei_contig7340.1.1 ID=mRNA_P-wetherbeei_contig7340.1.1|Name=mRNA_P-wetherbeei_contig7340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig7340:1687..2792- (Phaeothamnion wetherbeei SAG_119_79)
GGCACGACCGTCTTCTACGGGTCGACCATCACACTGCAGGCCCACCACGG
CGGCCACCTCAACTTCACGCCCAACCAGGCGATGCAAGCGTCGGCGACGG
GGCCTCGCCCAAACGCCCTGCTCACCATTTGGGACATCTACGACCCCGAG
GCGGTCGCCCCCGTCAGGCCAGCCGGCATTTCCGCCCACGACTCGGCTGC
CAGGTATGGGGACTTCCTGCTGCTCCAAGTCGGCCGGCATGAGATCATGG
GAACAAGTCTTGTCGTGCGCCACGGAGCCGACAGCAGTGGCGGAGGCGGC
GTTGCTGGCGGCCGGACCGACAACGACAGCGGCGACGGCGGCGGCCGAAG
CAGCGTCGGCGCTACCAACAGCGCTGGCGGCGTCGCGAAGCGCAACGCGG
CGGCGGCCATGGGCTCTCCCATAGCCATCAACTTCCGTGCCGGGAACATG
GAAAAGGCACGGCACATCGGGCGCTGGCAGGTGCTCAACGCAAAAGCCGG
AGACGCCGCCAAAGGCCAAGAGGTCTGCCACGGCGATCAGATCGTTTTGC
AGAGCTGCGCGTGGACTTGCCTGGCCAGCAGCGGGCCGGCTTCGGCCGTG
CTGGTCGCTTGT
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