mRNA_P-wetherbeei_contig734.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig734.5.1
Unique NamemRNA_P-wetherbeei_contig734.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: A0A836CAV6_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.870e-25
Identity = 57/134 (42.54%), Postives = 71/134 (52.99%), Query Frame = 2 
Query:  293 ATHEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            AT E+I+ALV  NP++VFMKGNR+ PQCG+SGT+V+IL+QL + YETVDV+ADDRIR                                                      EG+K +S WPTIPQL+LNGE VG
Sbjct:   32 ATQERIAALVADNPILVFMKGNRMFPQCGYSGTVVQILNQLGVPYETVDVMADDRIR------------------------------------------------------EGVKDFSNWPTIPQLYLNGEFVG 111
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: D8FTI6_9CYAN (Glutaredoxin n=2 Tax=Oscillatoriales TaxID=1150 RepID=D8FTI6_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 3.060e-20
Identity = 51/134 (38.06%), Postives = 65/134 (48.51%), Query Frame = 2 
Query:  293 ATHEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            A H+KI +LV  N V+VFMKGN+LMPQCGFS  +V+IL+ L + +ETVDVLAD  IR                                                      +G+K YS WPTIPQ+++NGE VG
Sbjct:    4 AAHDKIESLVKQNKVLVFMKGNKLMPQCGFSNNVVQILNTLGVPFETVDVLADPEIR------------------------------------------------------QGVKEYSNWPTIPQVYINGEFVG 83
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: D8LG05_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG05_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.860e-19
Identity = 49/133 (36.84%), Postives = 66/133 (49.62%), Query Frame = 2 
Query:  296 THEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            TH ++  +V+++ ++ F+KGNRLMPQCG+SGTLV IL  LS+ +ETVDVLAD+RIR                                                      +GIK +S WPTIPQL+L GE +G
Sbjct:   21 THAELQEMVSSHNILAFIKGNRLMPQCGYSGTLVNILQSLSVPFETVDVLADERIR------------------------------------------------------QGIKDFSNWPTIPQLYLGGEFIG 99
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: A0A2G4EZF5_9CYAN (Glutaredoxin n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A2G4EZF5_9CYAN)

HSP 1 Score: 89.4 bits (220), Expect = 2.370e-19
Identity = 49/134 (36.57%), Postives = 65/134 (48.51%), Query Frame = 2 
Query:  293 ATHEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            A H++I  LV  N +IVFMKGN+LMPQCGFS  +V+IL++L + YETVDVLAD  IR                                                      +G+K YS WPTIPQ+++NG+ +G
Sbjct:    4 APHQRIDDLVKQNKIIVFMKGNKLMPQCGFSNNVVQILNRLGVPYETVDVLADQEIR------------------------------------------------------QGVKEYSNWPTIPQVYINGKFLG 83
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: B7FPR3_PHATC (Glutaredoxin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPR3_PHATC)

HSP 1 Score: 89.4 bits (220), Expect = 3.120e-19
Identity = 50/136 (36.76%), Postives = 64/136 (47.06%), Query Frame = 2 
Query:  287 PDATHEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            PD+T  +I  LV   PV++FMKGN+L PQCGFS T V+IL+   I +ETVDVL+DD+IR                                                      EG+K YS WPTIPQL++ GE +G
Sbjct:   10 PDSTQNRIKNLVEEKPVLLFMKGNKLFPQCGFSNTAVQILESFKIDFETVDVLSDDKIR------------------------------------------------------EGVKLYSQWPTIPQLYVAGEFIG 91
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: A0A355CK23_9CYAN (Glutaredoxin n=8 Tax=Microcoleaceae TaxID=1892252 RepID=A0A355CK23_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 3.340e-19
Identity = 49/134 (36.57%), Postives = 63/134 (47.01%), Query Frame = 2 
Query:  293 ATHEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            A H+KI  LV  N ++VFMKGN+LMPQCGFS  +V+IL+ L + YET DVLAD  IR                                                      +G+K YS WPTIPQ+++NGE +G
Sbjct:    4 AAHQKIDELVKQNKIMVFMKGNKLMPQCGFSNNVVQILNTLGVPYETCDVLADQEIR------------------------------------------------------QGVKEYSNWPTIPQVYINGEFLG 83
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: A0A8J7JAV4_9CYAN (Glutaredoxin n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7JAV4_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 3.340e-19
Identity = 47/131 (35.88%), Postives = 62/131 (47.33%), Query Frame = 2 
Query:  302 EKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            E+I  L+ +N ++VFMKGN+LMPQCGFS  +VRI+D L + YET D+L+D  IR                                                      +GIK YS WPTIPQ+++NGE VG
Sbjct:    7 ERIETLINSNKIVVFMKGNKLMPQCGFSNNVVRIIDTLGVPYETFDILSDPDIR------------------------------------------------------QGIKEYSNWPTIPQIYINGEFVG 83
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: K9VR35_9CYAN (Glutaredoxin n=3 Tax=Oscillatoriales TaxID=1150 RepID=K9VR35_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 3.340e-19
Identity = 47/132 (35.61%), Postives = 64/132 (48.48%), Query Frame = 2 
Query:  299 HEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            H++I  LV  N ++VFMKGN+LMPQCGFS T+V+IL+ L + Y+T+DVLAD  IR                                                      +G+K YS WPTIPQ+++NGE +G
Sbjct:    6 HQRIDELVKQNKIMVFMKGNKLMPQCGFSNTVVQILNTLGVPYKTLDVLADQEIR------------------------------------------------------QGVKEYSNWPTIPQVYINGEFIG 83
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: A0A1E5QGL9_9CYAN (Glutaredoxin n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QGL9_9CYAN)

HSP 1 Score: 88.6 bits (218), Expect = 4.700e-19
Identity = 50/131 (38.17%), Postives = 63/131 (48.09%), Query Frame = 2 
Query:  302 EKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            EKI +LV  N ++VFMKGN+LMPQCGFS  +V+IL+ L + +ETVDVLAD  IR                                                      +GIK YS WPTIPQ+++NGE VG
Sbjct:    7 EKIDSLVNQNKILVFMKGNKLMPQCGFSNNVVQILNALGVPFETVDVLADPDIR------------------------------------------------------QGIKEYSNWPTIPQVYINGEFVG 83
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BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Match: A0A6P0QC72_9CYAN (Glutaredoxin n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=A0A6P0QC72_9CYAN)

HSP 1 Score: 87.8 bits (216), Expect = 9.280e-19
Identity = 48/131 (36.64%), Postives = 63/131 (48.09%), Query Frame = 2 
Query:  302 EKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLSIQYETVDVLADDRIR*VIRPLSRKIAWRKVWRLGLQALLLLICA*NGRASPELLISQPEFSCLE*RLLREGIKRYSGWPTIPQLFLNGELVG 694
            E+I +LV  N ++VFMKGN+LMPQCGFS  +V+IL+ L + +ETVD+LAD                                                        LR+GIK YS WPTIPQ+++NGE VG
Sbjct:    7 ERIDSLVNQNKIMVFMKGNKLMPQCGFSNNVVQILNTLGVPFETVDILADQE------------------------------------------------------LRQGIKEYSNWPTIPQVYINGEFVG 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig734.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAV6_9STRA5.870e-2542.54Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
D8FTI6_9CYAN3.060e-2038.06Glutaredoxin n=2 Tax=Oscillatoriales TaxID=1150 Re... [more]
D8LG05_ECTSI1.860e-1936.84Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A2G4EZF5_9CYAN2.370e-1936.57Glutaredoxin n=5 Tax=Cyanobacteria TaxID=1117 RepI... [more]
B7FPR3_PHATC3.120e-1936.76Glutaredoxin n=2 Tax=Phaeodactylum tricornutum Tax... [more]
A0A355CK23_9CYAN3.340e-1936.57Glutaredoxin n=8 Tax=Microcoleaceae TaxID=1892252 ... [more]
A0A8J7JAV4_9CYAN3.340e-1935.88Glutaredoxin n=1 Tax=Lusitaniella coriacea LEGE 07... [more]
K9VR35_9CYAN3.340e-1935.61Glutaredoxin n=3 Tax=Oscillatoriales TaxID=1150 Re... [more]
A0A1E5QGL9_9CYAN4.700e-1938.17Glutaredoxin n=2 Tax=unclassified Desertifilum Tax... [more]
A0A6P0QC72_9CYAN9.280e-1936.64Glutaredoxin n=2 Tax=unclassified Microcoleus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig734contigP-wetherbeei_contig734:6089..6784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LG05
Preferred nameGRX3
PFAMsGlutaredoxin,Thioredoxin
Model size696
Max annot lvl2759|Eukaryota
KEGG koko:K07390
Hectar predicted targeting categorysignal peptide
GOsGO:0001085,GO:0001102,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010604,GO:0010638,GO:0015036,GO:0015037,GO:0015038,GO:0016043,GO:0016226,GO:0016491,GO:0016667,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030029,GO:0030036,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031163,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0033613,GO:0034599,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044572,GO:0045185,GO:0046916,GO:0048037,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051220,GO:0051235,GO:0051246,GO:0051247,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0090312,GO:0098771,GO:1901564,GO:1902275,GO:1903025,GO:1903026,GO:1905269,GO:2000677,GO:2000678,GO:2001252
Exons1
Evalue3.35e-17
EggNOG OGsCOG0278@1|root,KOG0911@2759|Eukaryota
Descriptionprotein disulfide oxidoreductase activity
Cds size348
COG categoryO
BiGG ReactioniMM904.YER174C
BRITEko00000,ko03029,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186974.9428418-UTR-P-wetherbeei_contig734:6088..62061683186974.9428418-UTR-P-wetherbeei_contig734:6088..6206Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig734 6089..6206 +
1683186974.9738874-UTR-P-wetherbeei_contig734:6554..67841683186974.9738874-UTR-P-wetherbeei_contig734:6554..6784Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig734 6555..6784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186974.9627504-CDS-P-wetherbeei_contig734:6206..65541683186974.9627504-CDS-P-wetherbeei_contig734:6206..6554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig734 6207..6554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig734.5.1prot_P-wetherbeei_contig734.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig734 6207..6554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig734.5.1

>prot_P-wetherbeei_contig734.5.1 ID=prot_P-wetherbeei_contig734.5.1|Name=mRNA_P-wetherbeei_contig734.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MTLRLCTLVFAILGCCIPAFGFMLRPTTFNLAPRQSSAAGTASCRTRCTT
VHLSAAPDATHEKISALVTANPVIVFMKGNRLMPQCGFSGTLVRILDQLS
IQYETVDVLADDRIR*
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mRNA from alignment at P-wetherbeei_contig734:6089..6784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig734.5.1 ID=mRNA_P-wetherbeei_contig734.5.1|Name=mRNA_P-wetherbeei_contig734.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig734:6089..6784+ (Phaeothamnion wetherbeei SAG_119_79)
GATCGACGAGCCCCGCGACCTCCCACAGCCGCAGGAAGACAAGAAGTGGT
GGTTACTGAAAGCAAGCACCAAAGAAAACTTACGTGGGTGACTTGTTTGA
GAAGAAAATCATCCAAACATGACCCTGCGCCTTTGCACCCTCGTTTTTGC
CATTCTTGGGTGCTGTATCCCAGCGTTTGGCTTCATGCTTCGGCCCACGA
CATTCAACTTGGCGCCTCGGCAATCATCTGCCGCAGGAACAGCATCCTGC
CGCACGAGATGCACTACTGTTCATCTCTCCGCGGCCCCTGATGCGACGCA
TGAGAAGATTTCGGCGCTCGTGACGGCCAACCCTGTAATAGTTTTCATGA
AGGGAAACCGCTTGATGCCGCAGTGTGGGTTTTCTGGTACTCTGGTGCGA
ATCCTCGACCAGCTGTCAATCCAGTACGAAACTGTGGACGTCCTTGCCGA
CGACCGCATCAGGTGAGTTATTAGACCTCTCAGCAGGAAAATTGCCTGGA
GGAAAGTCTGGAGGCTGGGTTTGCAGGCATTACTTTTGCTGATTTGCGCC
TGAAATGGGCGGGCTTCTCCTGAATTGCTCATCTCTCAACCCGAGTTCTC
ATGCCTCGAGTGACGGCTTCTCAGGGAGGGAATCAAGCGCTACTCGGGCT
GGCCGACCATACCGCAGCTGTTTTTAAACGGAGAATTGGTTGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig734:6089..6784+

>mRNA_P-wetherbeei_contig734.5.1 ID=mRNA_P-wetherbeei_contig734.5.1|Name=mRNA_P-wetherbeei_contig734.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig734:6089..6784+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCTGCGCCTTTGCACCCTCGTTTTTGCCATTCTTGGGTGCTGTAT
CCCAGCGTTTGGCTTCATGCTTCGGCCCACGACATTCAACTTGGCGCCTC
GGCAATCATCTGCCGCAGGAACAGCATCCTGCCGCACGAGATGCACTACT
GTTCATCTCTCCGCGGCCCCTGATGCGACGCATGAGAAGATTTCGGCGCT
CGTGACGGCCAACCCTGTAATAGTTTTCATGAAGGGAAACCGCTTGATGC
CGCAGTGTGGGTTTTCTGGTACTCTGGTGCGAATCCTCGACCAGCTGTCA
ATCCAGTACGAAACTGTGGACGTCCTTGCCGACGACCGCATCAGGTGA
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