mRNA_P-wetherbeei_contig7338.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7338.3.2
Unique NamemRNA_P-wetherbeei_contig7338.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: D7FQ04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ04_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.230e-21
Identity = 55/99 (55.56%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVPRRAR 300
            R FP L S  R+GR +VS+ +CSFAVK+GREATARVVVAR+LG+ ++YTVE++FCGVD      +G    +HLN  HL+ AG  I +ALLDY++P +A+
Sbjct:  809 RVFPKLLSWNRLGRKYVSFKECSFAVKKGREATARVVVARDLGIGNSYTVESTFCGVD------FGPLKDHHLNTDHLQEAGVAICDALLDYYLPNQAQ 901
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A835YLX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.020e-19
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVPR 291
            R FP L S  R+G  +VS  DCSF V++GREATARVVVAREL V  +YTVE+SFCGVD      +G   G+HLN  HL  AG  I E+LLD + PR
Sbjct:  341 RVFPKLMSWNRLGGKYVSLGDCSFVVRKGREATARVVVARELSVAHSYTVESSFCGVD------FGPLAGHHLNIDHLVEAGRAICESLLDMYAPR 430
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A6H5KD86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD86_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.250e-18
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVV---------ARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVPRRAR 300
            R FP L S  R+GR +VS+ +CSFAVK+GREATARVVV         AR+LG+ ++YTVE++FCGVD      +G    +HLN  HL+ AG  I +ALLDY++P +A+
Sbjct: 1008 RVFPKLLSWNRLGRKYVSFKECSFAVKKGREATARVVVVLTWDITRQARDLGIGNSYTVESTFCGVD------FGPLKDHHLNTDHLQEAGVAICDALLDYYLPNQAQ 1109
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A7S1UIS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIS0_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.640e-18
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVPRRA 297
            R FP L S  R+G  +VS+ DCSFAVK+GRE T RVVVARE+ ++++YT+EA+FCG D G P Q       H N  HL   G G+ +ALLDY++P  +
Sbjct:  124 RVFPKLLSWNRLGGRYVSFKDCSFAVKKGREGTGRVVVAREINIKNSYTLEATFCGADFG-PLQ-----DCHFNMEHLMEVGRGLGDALLDYYLPNHS 215
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: F0YI27_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI27_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 2.650e-15
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVP 288
            R FP L S   IGR +V++ADCSF VK+ RE T RVVVARE+ + +++T+EASFCG +      +G    YH N  H + AG  +  ALLDY++P
Sbjct:  331 RVFPKLLSWNEIGRKYVNFADCSFHVKKSREGTGRVVVAREMCISNSFTLEASFCGSN------FGVLQNYHFNMGHFQEAGRSLCGALLDYYLP 419
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A7S3Y6G4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6G4_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 1.630e-14
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYF 282
            R F  L S  R+ +++VS+ DCSF  K+GRE TARVVV+RELG++ +YT+E++FCG D      YG    +H N  H    G GI +  LD+F
Sbjct:  187 RAFAKLMSCNRVAKEYVSFQDCSFNAKKGRETTARVVVSRELGIKCSYTLESTFCGAD------YGKLKDFHFNTAHFIDLGKGICDTFLDFF 273
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A6G0WM54_9STRA (Tubulin-glutamate carboxypeptidase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM54_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.660e-14
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVP 288
            R FP L S+  IGR +VS A CSF V RGREATARVVV R+LG+++++T+EASFCG D      +G    +H N  HL   G  + + LL+Y +P
Sbjct: 1095 RTFPRLLSQHCIGRKYVSLAGCSFQVHRGREATARVVVGRDLGIQNSFTLEASFCGAD------FGLLANHHFNLRHLDDIGVALAQTLLEYAMP 1183
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A7S3M086_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M086_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.040e-13
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFV 285
            R FP + S    GR +V Y DCSFAVK+GRE+TARVVV++E+ + +++T+EA+FCG +      YG     H+N  HL+  G+ + +++L+YF+
Sbjct:   92 RTFPKMLSMHSAGRKYVCYNDCSFAVKKGRESTARVVVSKEINIMNSFTLEATFCGSN------YGPLKHCHMNIGHLQEVGSSLCDSILNYFI 179
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A485KXS2_9STRA (Tubulin-glutamate carboxypeptidase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXS2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.260e-12
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVP 288
            R FP L S   IG+ +VS   C+F V RGREATARVVV R++G+ +++T+EASFCG D      +G     H N  HL+  G  + + L++Y +P
Sbjct: 1088 RAFPRLLSTHWIGQQYVSLDSCNFQVNRGREATARVVVGRDMGILNSFTLEASFCGAD------FGVLAHQHFNLRHLQDVGLALAQTLMEYAMP 1176
[Close]
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Match: A0A024TKN5_9STRA (Tubulin-glutamate carboxypeptidase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKN5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.640e-11
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    4 RGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYTVEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVP 288
            R FP L S   +GR +VS   C+F V RGRE+TARVVV R++G+ +++T+EASFCG D      +G     H N  H    G    ++L DY +P
Sbjct: 1117 RTFPKLLSSHWVGRQYVSLDSCNFQVNRGRESTARVVVGRDMGIANSFTLEASFCGAD------FGRLANQHFNLRHFDDIGLAFGQSLADYAMP 1205
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7338.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ04_ECTSI5.230e-2155.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLX9_9STRA2.020e-1957.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KD86_9PHAE1.250e-1850.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UIS0_9STRA2.640e-1851.02Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YI27_AURAN2.650e-1548.42Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3Y6G4_HETAK1.630e-1446.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6G0WM54_9STRA1.660e-1449.47Tubulin-glutamate carboxypeptidase n=1 Tax=Aphanom... [more]
A0A7S3M086_9STRA1.040e-1343.62Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A485KXS2_9STRA2.260e-1244.21Tubulin-glutamate carboxypeptidase n=1 Tax=Aphanom... [more]
A0A024TKN5_9STRA2.640e-1143.16Tubulin-glutamate carboxypeptidase n=2 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7338contigP-wetherbeei_contig7338:188..3118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ04
Preferred nameAGTPBP1
PFAMsPeptidase_M14
Model size2559
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0001505,GO:0001654,GO:0001754,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003008,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007610,GO:0007626,GO:0007628,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008344,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009987,GO:0015631,GO:0016043,GO:0016787,GO:0018193,GO:0018200,GO:0018410,GO:0018991,GO:0019098,GO:0019538,GO:0021533,GO:0021537,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021694,GO:0021695,GO:0021696,GO:0021697,GO:0021702,GO:0021772,GO:0021953,GO:0021988,GO:0022008,GO:0022037,GO:0022414,GO:0030097,GO:0030098,GO:0030154,GO:0030182,GO:0030217,GO:0030534,GO:0030900,GO:0030902,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0033077,GO:0035608,GO:0035609,GO:0035610,GO:0036211,GO:0042110,GO:0042133,GO:0043009,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046530,GO:0046649,GO:0048513,GO:0048534,GO:0048592,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050877,GO:0050905,GO:0060041,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0090596,GO:0090659,GO:0140096,GO:1901564
Exons3
Evalue8.58e-22
EggNOG OGsCOG2866@1|root,KOG3641@2759|Eukaryota
Descriptionprotein deglutamylation
Cds size2559
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186973.5313652-CDS-P-wetherbeei_contig7338:187..5291683186973.5313652-CDS-P-wetherbeei_contig7338:187..529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7338 188..529 -
1683186973.5416713-CDS-P-wetherbeei_contig7338:687..10531683186973.5416713-CDS-P-wetherbeei_contig7338:687..1053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7338 688..1053 -
1683186973.5499952-CDS-P-wetherbeei_contig7338:1267..31181683186973.5499952-CDS-P-wetherbeei_contig7338:1267..3118Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7338 1268..3118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7338.3.2prot_P-wetherbeei_contig7338.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7338 188..3118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7338.3.2

>prot_P-wetherbeei_contig7338.3.2 ID=prot_P-wetherbeei_contig7338.3.2|Name=mRNA_P-wetherbeei_contig7338.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=853bp
PRGFPWLCSRGRIGRDFVSYADCSFAVKRGREATARVVVARELGVRDAYT
VEASFCGVDLGGPGQYGGFGGYHLNPTHLRRAGAGILEALLDYFVPRRAR
SMAAAAAAAAATAAAVATVAETVAAAAASAGADEGATAGTAVIAVAGRAG
RGGPSRSYVGGSAIVARRVSGGQVAVPNRTVATTATAARAAAITAAAAAA
AAEAAAAAAAPMAAGDATTLLAARIAASESTGSHTAPATAAADIASTLDD
FSKAADQISDDLDLLAAADEAAVAASETAAVTAAAAVAAADANDSDGAAD
GADENVDDNGDVESESEEASEAEHDEADEAAAAAAAVAAAAAAAAAAVAA
ADPAEDEAGNDAIVADSFEDEDDMDHQYDAGPTASDRFAEAPGDGNGSEV
DGAGYASRESSGGDGAGAGTDASASVPTVGGSRHRRCRSSSARRGFSPIV
TPPSPGHYGSYEGIDDSGGGGTGTGYLPPGARIQDRSASIAAGGGAAAVR
ATIDKTVTAAVAAARTGAPPSPSESNGRAPLDGSGNGGDSGGGGGGASGR
RGSGANGGGGGGGGRRLVKAPRGSRAGKGKKAARSAAQASGAALRSGNGG
NVPTALSRRKRTTSLPEPPGYGDKVTVFLSSTKMALVEAGMAEVDMTVMG
VTAPDAAAAGFAAGAVATGAAAGVVAGHVGGSLPTWDPTAAPGTGGDTSA
ELWRPREATVRGAVRDGAAAARGGSSRWLHASTALARRKAAQRQGVALPP
SFTSGAAGNVVSAASAAATTVAGINESGGRAPLLWSYSAGDEAAVPPPLS
SLPPANDGNSGSDANSFGGVGGSRGAGVGVGGSSRSGDALALPQLWPFAA
AED
back to top

mRNA from alignment at P-wetherbeei_contig7338:188..3118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7338.3.2 ID=mRNA_P-wetherbeei_contig7338.3.2|Name=mRNA_P-wetherbeei_contig7338.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2931bp|location=Sequence derived from alignment at P-wetherbeei_contig7338:188..3118- (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCGGCTTTCCTTGGCTCTGCTCGCGCGGCCGCATTGGCCGCGACTT
CGTGAGCTACGCCGACTGCTCCTTCGCCGTCAAGCGTGGCCGCGAGGCGA
CCGCCCGCGTCGTCGTCGCCCGCGAACTTGGTGTCCGTGACGCGTACACC
GTCGAGGCGTCGTTCTGTGGTGTCGATCTGGGCGGGCCCGGCCAATATGG
CGGTTTTGGTGGCTACCACCTTAACCCGACGCACCTGCGGCGGGCCGGCG
CGGGCATTCTCGAGGCGCTGCTGGACTACTTCGTGCCGCGACGTGCGCGG
AGCATGGCGGCCGCCGCTGCGGCAGCTGCAGCGACGGCTGCTGCGGTTGC
AACGGTGGCGGAAACTGTCGCTGCAGCGGCCGCCTCTGCAGGGGCCGACG
AAGGCGCCACGGCAGGTACGGCGGTTATCGCGGTTGCAGGGCGAGCGGGG
CGCGGCGGGCCTTCGAGGAGCTATGTCGGTGGGTCCGCCATTGTGGCTCG
GAGGGTCTCCGGCGGACAGGTGGCGGTTCCCAACAGGACCGTCGCGACGA
CGGCGACTGCCGCGAGGGCAGCGGCCATAACAGCAGCAGCGGCGGCGGCA
GCAGCGGAAGCGGCGGCAGCTGCAGCGGCGCCAATGGCAGCAGGCGATGC
GACGACGCTCCTCGCTGCTCGCATTGCCGCGTCCGAGAGCACCGGATCTC
ACACCGCTCCTGCCACCGCAGCCGCTGACATAGCCAGCACTTTAGACGAC
TTTTCGAAAGCCGCTGACCAAATAAGCGATGACCTTGACTTGCTGGCGGC
CGCTGACGAAGCCGCAGTAGCAGCATCAGAAACAGCAGCGGTGACAGCTG
CGGCTGCGGTGGCGGCGGCGGATGCCAACGACAGCGATGGAGCTGCCGAT
GGCGCCGACGAGAATGTCGACGACAATGGCGACGTCGAGTCGGAGAGCGA
GGAGGCCAGCGAGGCGGAGCACGATGAGGCGGACGAAGCCGCAGCTGCCG
CTGCCGCCGTCGCCGCTGCCGCCGCCGCTGCGGCTGCCGCCGTTGCCGCC
GCCGACCCCGCTGAAGATGAGGCCGGCAACGATGCCATTGTAGCAGATTC
GTTCGAGGACGAAGACGACATGGACCACCAGTATGATGCAGGACCGACGG
CATCGGACCGCTTCGCAGAAGCGCCGGGGGACGGCAATGGAAGCGAGGTG
GATGGGGCGGGGTATGCCAGCCGCGAGAGCAGCGGCGGCGACGGCGCAGG
CGCCGGCACAGATGCTTCTGCTTCCGTTCCCACAGTCGGAGGAAGCCGGC
ATCGCCGATGCCGCAGTTCAAGTGCGCGGAGGGGCTTTTCGCCCATCGTC
ACACCGCCATCCCCGGGCCATTACGGCAGTTACGAAGGAATCGACGACAG
CGGCGGCGGTGGCACCGGCACCGGATATCTGCCCCCTGGTGCCAGAATAC
AGGATCGATCTGCGTCTATTGCGGCCGGCGGCGGCGCCGCCGCCGTCCGC
GCCACGATTGACAAGACTGTGACCGCTGCTGTCGCCGCGGCCCGCACGGG
GGCACCTCCCTCGCCTTCTGAATCCAACGGCCGGGCGCCGTTGGACGGCA
GCGGCAACGGCGGCGACAGCGGCGGCGGCGGCGGCGGTGCATCAGGTCGC
CGGGGCAGCGGTGCTAATGGCGGCGGAGGAGGAGGCGGCGGCAGGCGGCT
GGTCAAGGCGCCGCGGGGGAGCCGTGCTGGCAAGGGCAAGAAGGCGGCAC
GGAGCGCGGCGCAAGCCTCCGGGGCAGCGCTAAGAAGCGGCAACGGCGGC
AACGTGCCCACGGCGCTTTCGCGCCGCAAGCGCACCACCAGCTTGCCTGA
GGTGAGACGGGACCCATCTTAAACACGCTACTCTTTTCGTTCTCGGTTGT
GGACATACATCTTGGAAGATTGGCGTCCTCCTTTCGTTGGCGCGAAATTT
TCGCGAAGGATTGCCATCTCTTGCTTGTGCCCTGTGACTGTGCCCCTCAC
GCTTCGTGCCTCTCGGCCTTCGGGGCATGCCCGCATTTTTTCCTGCTCAA
CTCACCGAGGAGAAGCCACCGGGATACGGCGACAAGGTGACCGTCTTCCT
GTCGTCGACCAAAATGGCGTTGGTCGAGGCGGGGATGGCCGAGGTAGACA
TGACAGTCATGGGAGTTACAGCGCCCGACGCGGCGGCCGCTGGCTTTGCC
GCCGGAGCGGTGGCCACTGGCGCTGCCGCCGGAGTGGTGGCAGGTCACGT
CGGAGGATCTTTGCCCACGTGGGATCCAACGGCGGCCCCGGGGACCGGGG
GCGACACCTCCGCCGAGCTGTGGCGGCCGCGGGAAGCCACAGTTCGCGGG
GCGGTGCGCGACGGTGCGGCAGCGGCACGCGGCGGCAGCTCCCGCTGGCT
TCACGCCAGCACGGCGCTCGCTCGGCGAAAGGTGAAGAGCTTTCATTGGG
GTATGCGAGGGACCGTGCAGGTACCATTTGTACAGGGCAAAAATCCTATA
TATTCTCTGATCTGTATCTTTGGCGTTTATGTTTTTATTTCTCAAAATTG
GGCCTCATTTTCTGTTCCCTTCGTGCCCTCCCCGCGTAGGCGGCGCAGCG
GCAAGGCGTTGCACTGCCGCCGAGCTTCACAAGTGGCGCAGCTGGAAATG
TCGTCTCGGCTGCATCTGCAGCAGCGACGACGGTGGCAGGAATAAACGAA
AGCGGCGGACGCGCTCCGCTTCTCTGGTCATACAGTGCAGGAGACGAGGC
TGCCGTGCCGCCGCCGCTGTCGTCGCTGCCGCCCGCAAATGATGGAAATA
GCGGCAGTGACGCCAACAGCTTTGGCGGCGTCGGCGGCAGCCGCGGAGCC
GGCGTCGGCGTCGGGGGCAGCAGCAGAAGTGGCGATGCCCTCGCGCTGCC
GCAGCTGTGGCCTTTCGCCGCTGCCGAGGAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7338:188..3118-

>mRNA_P-wetherbeei_contig7338.3.2 ID=mRNA_P-wetherbeei_contig7338.3.2|Name=mRNA_P-wetherbeei_contig7338.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2559bp|location=Sequence derived from alignment at P-wetherbeei_contig7338:188..3118- (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCGGCTTTCCTTGGCTCTGCTCGCGCGGCCGCATTGGCCGCGACTT
CGTGAGCTACGCCGACTGCTCCTTCGCCGTCAAGCGTGGCCGCGAGGCGA
CCGCCCGCGTCGTCGTCGCCCGCGAACTTGGTGTCCGTGACGCGTACACC
GTCGAGGCGTCGTTCTGTGGTGTCGATCTGGGCGGGCCCGGCCAATATGG
CGGTTTTGGTGGCTACCACCTTAACCCGACGCACCTGCGGCGGGCCGGCG
CGGGCATTCTCGAGGCGCTGCTGGACTACTTCGTGCCGCGACGTGCGCGG
AGCATGGCGGCCGCCGCTGCGGCAGCTGCAGCGACGGCTGCTGCGGTTGC
AACGGTGGCGGAAACTGTCGCTGCAGCGGCCGCCTCTGCAGGGGCCGACG
AAGGCGCCACGGCAGGTACGGCGGTTATCGCGGTTGCAGGGCGAGCGGGG
CGCGGCGGGCCTTCGAGGAGCTATGTCGGTGGGTCCGCCATTGTGGCTCG
GAGGGTCTCCGGCGGACAGGTGGCGGTTCCCAACAGGACCGTCGCGACGA
CGGCGACTGCCGCGAGGGCAGCGGCCATAACAGCAGCAGCGGCGGCGGCA
GCAGCGGAAGCGGCGGCAGCTGCAGCGGCGCCAATGGCAGCAGGCGATGC
GACGACGCTCCTCGCTGCTCGCATTGCCGCGTCCGAGAGCACCGGATCTC
ACACCGCTCCTGCCACCGCAGCCGCTGACATAGCCAGCACTTTAGACGAC
TTTTCGAAAGCCGCTGACCAAATAAGCGATGACCTTGACTTGCTGGCGGC
CGCTGACGAAGCCGCAGTAGCAGCATCAGAAACAGCAGCGGTGACAGCTG
CGGCTGCGGTGGCGGCGGCGGATGCCAACGACAGCGATGGAGCTGCCGAT
GGCGCCGACGAGAATGTCGACGACAATGGCGACGTCGAGTCGGAGAGCGA
GGAGGCCAGCGAGGCGGAGCACGATGAGGCGGACGAAGCCGCAGCTGCCG
CTGCCGCCGTCGCCGCTGCCGCCGCCGCTGCGGCTGCCGCCGTTGCCGCC
GCCGACCCCGCTGAAGATGAGGCCGGCAACGATGCCATTGTAGCAGATTC
GTTCGAGGACGAAGACGACATGGACCACCAGTATGATGCAGGACCGACGG
CATCGGACCGCTTCGCAGAAGCGCCGGGGGACGGCAATGGAAGCGAGGTG
GATGGGGCGGGGTATGCCAGCCGCGAGAGCAGCGGCGGCGACGGCGCAGG
CGCCGGCACAGATGCTTCTGCTTCCGTTCCCACAGTCGGAGGAAGCCGGC
ATCGCCGATGCCGCAGTTCAAGTGCGCGGAGGGGCTTTTCGCCCATCGTC
ACACCGCCATCCCCGGGCCATTACGGCAGTTACGAAGGAATCGACGACAG
CGGCGGCGGTGGCACCGGCACCGGATATCTGCCCCCTGGTGCCAGAATAC
AGGATCGATCTGCGTCTATTGCGGCCGGCGGCGGCGCCGCCGCCGTCCGC
GCCACGATTGACAAGACTGTGACCGCTGCTGTCGCCGCGGCCCGCACGGG
GGCACCTCCCTCGCCTTCTGAATCCAACGGCCGGGCGCCGTTGGACGGCA
GCGGCAACGGCGGCGACAGCGGCGGCGGCGGCGGCGGTGCATCAGGTCGC
CGGGGCAGCGGTGCTAATGGCGGCGGAGGAGGAGGCGGCGGCAGGCGGCT
GGTCAAGGCGCCGCGGGGGAGCCGTGCTGGCAAGGGCAAGAAGGCGGCAC
GGAGCGCGGCGCAAGCCTCCGGGGCAGCGCTAAGAAGCGGCAACGGCGGC
AACGTGCCCACGGCGCTTTCGCGCCGCAAGCGCACCACCAGCTTGCCTGA
GCCACCGGGATACGGCGACAAGGTGACCGTCTTCCTGTCGTCGACCAAAA
TGGCGTTGGTCGAGGCGGGGATGGCCGAGGTAGACATGACAGTCATGGGA
GTTACAGCGCCCGACGCGGCGGCCGCTGGCTTTGCCGCCGGAGCGGTGGC
CACTGGCGCTGCCGCCGGAGTGGTGGCAGGTCACGTCGGAGGATCTTTGC
CCACGTGGGATCCAACGGCGGCCCCGGGGACCGGGGGCGACACCTCCGCC
GAGCTGTGGCGGCCGCGGGAAGCCACAGTTCGCGGGGCGGTGCGCGACGG
TGCGGCAGCGGCACGCGGCGGCAGCTCCCGCTGGCTTCACGCCAGCACGG
CGCTCGCTCGGCGAAAGGCGGCGCAGCGGCAAGGCGTTGCACTGCCGCCG
AGCTTCACAAGTGGCGCAGCTGGAAATGTCGTCTCGGCTGCATCTGCAGC
AGCGACGACGGTGGCAGGAATAAACGAAAGCGGCGGACGCGCTCCGCTTC
TCTGGTCATACAGTGCAGGAGACGAGGCTGCCGTGCCGCCGCCGCTGTCG
TCGCTGCCGCCCGCAAATGATGGAAATAGCGGCAGTGACGCCAACAGCTT
TGGCGGCGTCGGCGGCAGCCGCGGAGCCGGCGTCGGCGTCGGGGGCAGCA
GCAGAAGTGGCGATGCCCTCGCGCTGCCGCAGCTGTGGCCTTTCGCCGCT
GCCGAGGAT
back to top