mRNA_P-wetherbeei_contig7332.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7332.3.1
Unique NamemRNA_P-wetherbeei_contig7332.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: A0A836C8X1_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.190e-28
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRFPNV+GK+SYSNLYTSINVLAGHYASYGPKFPVPEKRRKRL  EYS I++AIKRQR
Sbjct:  127 RRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLMEEYSQIDKAIKRQR 184
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: A0A836CEQ5_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.980e-28
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRFPNV+GK+SYSNLYTSINVLAGHYASYGPKFPVPEKRRKRL  EY+ IE+AIKRQR
Sbjct:  139 RRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLLEEYNQIEKAIKRQR 196
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: D8LJ72_ECTSI (Photosystem II 11 kDa protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ72_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.780e-26
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RR  N+ GK+SYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRL  EY+DIERAIKRQR
Sbjct:  149 RRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: A0A6V1P1T2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P1T2_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 2.940e-24
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRFPNV+GK+SYS LYTS+NVLAGHYASYG KFPVPEKRRKRL  EY++IE+ +K+QR
Sbjct:  132 RRFPNVSGKMSYSTLYTSVNVLAGHYASYGTKFPVPEKRRKRLAQEYAEIEKNLKKQR 189
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: F0YDF6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDF6_AURAN)

HSP 1 Score: 94.0 bits (232), Expect = 1.370e-23
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRF NV+GK S+S LYT+INVLAGHY SYGPKFPVPEKRRKRL+ EY++IE+ IK++R
Sbjct:   45 RRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: A0A7S3ZPN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPN6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.640e-23
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRF NV+GK S+S LYT+INVLAGHY SYGPKFPVPEKRRKRLF EY+++E+ IK++R
Sbjct:   77 RRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLFQEYAEVEKNIKKRR 134
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: A0A7S1XRA0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRA0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.330e-23
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRFPNVAGK S+S LYT+INVLAGHY +YG KFPVPEKR+KRLF EY++IE+ IKRQR
Sbjct:  147 RRFPNVAGKPSFSTLYTAINVLAGHYTNYGLKFPVPEKRKKRLFQEYAEIEKNIKRQR 204
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: A0A7S2RS08_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS08_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.150e-22
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRFPNVAGK S+S LYTSINVLAGHY SYG K+P+PEKRRKRL+ EY++I++++KR R
Sbjct:   98 RRFPNVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIDKSLKRNR 155
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: A0A1E7ETC2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETC2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.260e-22
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRFP +AGK S+S LYTSINVLAGHY SYG K+P+PEKRRKRL+ EYS+IE+++KR R
Sbjct:  126 RRFPKIAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYSEIEKSLKRSR 183
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BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Match: K0R371_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R371_THAOC)

HSP 1 Score: 92.0 bits (227), Expect = 5.120e-22
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   16 RRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFIEYSDIERAIKRQR 189
            RRFP VAGK S+S LYTSINVLAGHY SYG K+P+PEKRRKRL+ EY++IE+++KR R
Sbjct:  116 RRFPQVAGKPSFSTLYTSINVLAGHYTSYGYKYPLPEKRRKRLYQEYAEIEKSLKRNR 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7332.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8X1_9STRA2.190e-2887.93Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A836CEQ5_9STRA2.980e-2887.93Photosystem II Pbs27-domain-containing protein n=1... [more]
D8LJ72_ECTSI9.780e-2684.48Photosystem II 11 kDa protein n=2 Tax=Ectocarpus T... [more]
A0A6V1P1T2_HETAK2.940e-2477.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YDF6_AURAN1.370e-2374.14Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3ZPN6_9STRA1.640e-2374.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XRA0_9STRA3.330e-2377.59Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RS08_9STRA1.150e-2272.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1E7ETC2_9STRA3.260e-2272.41Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
K0R371_THAOC5.120e-2272.41Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7332contigP-wetherbeei_contig7332:2928..3119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJ72
PFAMsPSII_Pbs27
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K08902
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0009628,GO:0009642,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055035,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0071704,GO:0104004,GO:1901564
Exons1
Evalue1.6e-26
EggNOG OGs2CXSW@1|root,2RZI3@2759|Eukaryota
Ec32 ortholog descriptionphotosystem II 11 kDa protein
Ec32 orthologEc-02_005010.1
DescriptionPhotosystem II Pbs27
Cds size192
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186973.1815612-CDS-P-wetherbeei_contig7332:2927..31191683186973.1815612-CDS-P-wetherbeei_contig7332:2927..3119Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7332 2928..3119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7332.3.1prot_P-wetherbeei_contig7332.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7332 2928..3119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7332.3.1

>prot_P-wetherbeei_contig7332.3.1 ID=prot_P-wetherbeei_contig7332.3.1|Name=mRNA_P-wetherbeei_contig7332.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MWRESRRFPNVAGKISYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLFI
EYSDIERAIKRQR*
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mRNA from alignment at P-wetherbeei_contig7332:2928..3119-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7332.3.1 ID=mRNA_P-wetherbeei_contig7332.3.1|Name=mRNA_P-wetherbeei_contig7332.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig7332:2928..3119- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGCGGGAGAGCAGGCGGTTCCCGAACGTGGCGGGCAAGATTTCCTA
CTCCAACCTCTACACGTCCATCAACGTCCTGGCAGGGCACTACGCGTCGT
ACGGCCCCAAGTTTCCCGTCCCGGAGAAGCGCCGGAAGCGCCTCTTTATT
GAATACTCGGACATCGAGCGAGCCATCAAGCGGCAGAGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7332:2928..3119-

>mRNA_P-wetherbeei_contig7332.3.1 ID=mRNA_P-wetherbeei_contig7332.3.1|Name=mRNA_P-wetherbeei_contig7332.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig7332:2928..3119- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGCGGGAGAGCAGGCGGTTCCCGAACGTGGCGGGCAAGATTTCCTA
CTCCAACCTCTACACGTCCATCAACGTCCTGGCAGGGCACTACGCGTCGT
ACGGCCCCAAGTTTCCCGTCCCGGAGAAGCGCCGGAAGCGCCTCTTTATT
GAATACTCGGACATCGAGCGAGCCATCAAGCGGCAGAGGTAG
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