mRNA_P-wetherbeei_contig7328.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7328.1.1
Unique NamemRNA_P-wetherbeei_contig7328.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7328contigP-wetherbeei_contig7328:223..3121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2099
Hectar predicted targeting categoryother localisation
Exons5
Cds size1170
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7328.1.1prot_P-wetherbeei_contig7328.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7328 347..2316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186972.6501129-UTR-P-wetherbeei_contig7328:222..3461683186972.6501129-UTR-P-wetherbeei_contig7328:222..346Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7328 223..346 -
1683186972.7232676-UTR-P-wetherbeei_contig7328:2316..31211683186972.7232676-UTR-P-wetherbeei_contig7328:2316..3121Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7328 2317..3121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186972.6632147-CDS-P-wetherbeei_contig7328:346..6581683186972.6632147-CDS-P-wetherbeei_contig7328:346..658Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7328 347..658 -
1683186972.674548-CDS-P-wetherbeei_contig7328:866..9981683186972.674548-CDS-P-wetherbeei_contig7328:866..998Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7328 867..998 -
1683186972.684999-CDS-P-wetherbeei_contig7328:1289..14631683186972.684999-CDS-P-wetherbeei_contig7328:1289..1463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7328 1290..1463 -
1683186972.6971252-CDS-P-wetherbeei_contig7328:1606..18731683186972.6971252-CDS-P-wetherbeei_contig7328:1606..1873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7328 1607..1873 -
1683186972.709146-CDS-P-wetherbeei_contig7328:2031..23161683186972.709146-CDS-P-wetherbeei_contig7328:2031..2316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7328 2032..2316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7328.1.1

>prot_P-wetherbeei_contig7328.1.1 ID=prot_P-wetherbeei_contig7328.1.1|Name=mRNA_P-wetherbeei_contig7328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=390bp
MSRNRSTAVLPPPPSAPGDAAVPVTPPSPRPLGLSSFTTAGAAATRMPRC
ARKLREEALSVLWPQARRLNAAAARAATNPAALTAAMTEALTPLEAALEE
PLRHGQVLLQMARALQEDAAVAAAAGTGAGTAAGSDTTATEEEAAVCLAA
AARLEPPRPDVLFAYAFALYRAGDAVGAEASYLNLLSMEPGHAAAWYNLG
YMASAAGDAEAAVDRFVRAAACAPDDAEIRVHLGNAHKDCGEAEAAAECY
RHAARLDPQSLEANYNLGVVLQAAGRWDEAIDSFRRAIDVNPLCAEAHVG
LAAVMLARDDAAAESSGGGGGGDGGYGGGVTVAAGEASAAETADAVAACL
NTVLRIDPANEAALSLLRELTGGGRSRLLSPSLVACEGD*
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mRNA from alignment at P-wetherbeei_contig7328:223..3121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7328.1.1 ID=mRNA_P-wetherbeei_contig7328.1.1|Name=mRNA_P-wetherbeei_contig7328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2899bp|location=Sequence derived from alignment at P-wetherbeei_contig7328:223..3121- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGTACGTGGCAGTTGCGACCGACGACGAGATCTCACGGGCAGCGC
GAGCGCGCATCCAAAAACCCCGCGGTGGCAGCGACGGCAGCAGAGCTGGC
AGCAATGGCGGCAGAGCTGGCAGAAGTGGCCATAAGGGTAGCAACTACCA
TGGTGGTGGCGGCAGCGGCGGCGGCGGCAGCGGCAGCGGCGAAAGTGGCA
GCAACGGTTCCCTCCGCCAGATTGGGAGCGCTAATGCCAACAGCCTTCTC
GGAGCGTTCGGCAGCTGCGAAAGTGCAGCGAACGTGCTTGGGGCTGCCGG
AGGAAGACGAGATTCGGCAAGCAACGGTATCGCCGATACAAGTGGCGGCG
CGGCCGAAACGCAGGAAGTCAACGACGGGCAGGACGCTGGTGAGGGCAAC
ATCGCCGAGCAGGCCACCGCTGGCGCTGCGGCCGCCGTAACCACCGCCGC
CGCCGCCATCGCTGCTGCCACTCCCGTTATTGCTGCAACCACAGCTGCAA
CCAAGCCGGAAGCAACGTCACCACCGCCGCCGCCGTTGTCTCCGAACCAC
CACCGCGGCCTGAGCTGGCTGACCGGCAGCGAGTACGCCCTCGTTGACGA
CAGCTCGGAGTCCCTGGCAGGACCGGTGCTGCAGAGCCTTGTGGCGTGGG
AGGGCCCGTACCTGCAGCGGTTCCTTTCCGGTTTCGTTTTGGAGCTGCCG
GAGGGGGATGCCGGAGCCAGGAGCGGCGGCGGCGAGGGCGACGTTTTCGG
ATCGTCCGAAGCACCGGAGTGCCGCCAATCAGACTCGCCGCCACGACTTT
GCTCCATGTCCCGAAACAGGAGTACGGCCGTCTTGCCGCCGCCACCCTCA
GCGCCGGGCGACGCCGCGGTGCCAGTCACACCGCCGTCGCCGCGGCCTCT
GGGACTCTCGTCGTTTACGACAGCAGGGGCTGCTGCAACGCGGATGCCGC
GCTGCGCCCGCAAGCTGCGGGAAGAGGCACTTTCGGTCTTGTGGCCGCAG
GCGCGACGCCTCAACGCGGCAGCTGCGCGCGCGGCGACAAATCCGGCAGC
ATTAACGGCGGCGATGACAGAGGCGCTGACACCACTGGAAGTGTGTTTGG
GTGGTTCTGTATGCATGTCGAAGTGCGCTTGCGCTTGTGCCATCATGTTT
TGATTGCTTTCTCCGCAACTTGCTTGTGTGGGACCAATTGGCAACCTGGC
AAGAATGCCGACAACAGCGACTGTTCCTTATCGCCATTCCTGACGCAGGC
CGCGCTGGAGGAGCCCCTCCGCCACGGGCAGGTCCTGCTTCAGATGGCGC
GGGCGCTGCAGGAAGATGCCGCCGTCGCCGCGGCTGCAGGCACCGGCGCT
GGCACCGCCGCCGGCAGCGACACCACCGCCACCGAGGAGGAGGCGGCGGT
CTGCCTCGCTGCCGCGGCGCGGTTGGAGCCACCGCGCCCCGACGTGCTCT
TCGCGTACGCCTTCGCGCTGTACCGTGCGGGGGACGCCGTGGGGGCCGAG
GCGAGCTATCTGAATGTGGGTGGGTGGCGGTCTTGGCTTCCAATCGGCGC
TGCGGAGGTAGTCGTGGACTCCAAGTTCGCCTTAACCTCTTTCAGACACT
CTTTGTGCACGCGCTCGGACCTGATTCCTCCAATTATGCTGTCCTCCTTC
GTTTACAGCTTCTGTCGATGGAGCCGGGTCATGCGGCAGCATGGTACAAC
CTGGGGTACATGGCCTCCGCCGCCGGCGACGCCGAGGCGGCGGTCGACCG
CTTCGTGCGGGCCGCGGCATGCGCACCGGACGATGCCGAGATCCGCGTAC
ACCTCGGAAACGCGCACAAGGACTGCGGGGAGGTACGTAGTCTACCGTTT
CAGAAAAAAAAGGTCGTTGTCGCATTGCGTGTGTCGGTTCGGTCAGCAGT
GATCAGGCTCTGCACTGGGGAAAGGAGCGAAGCCTGCTTGAAGGGGATGC
TGTGGGTTTACGGGCGCACTTTTCCGAGCTATCTTAAGTTAACTGCACGG
CTTTCCGACCTTGCCGACGCTGCCACATCCGCCGCTACTGCCCCTTACCG
CCCGCCGCCGCCCCGCCGCTCACCGCTGCCATTGGCCCATGCTCGGCCGA
CACCCGCCGGAAATGTTTTGCAGGCCGAGGCGGCAGCGGAGTGCTACCGC
CACGCGGCCCGGTTGGACCCGCAGAGCCTCGAGGCCAACTATAACCTCGG
GGTGGTGCTGCAGGCGGCCGGCCGCTGGGACGAGGCAATCGACAGCTTTC
GCAGGGTAAGCTCGTTTATCTTTTCTTGCTTCTTTTTCCTGTTCATATTC
TCGTTTTAGCTGATCTTTTCAGCTGACCTTGGTTGCGATCGTTGGAAGGT
CCCAGGCGACCCCTTTTTCCATAGTCAGTCAGTTGTCCGGTCTTTGTCCT
TGTTTTTGACATGCTCACAGGTCCGCAATGAACGCCGCATCCTTGTGTAT
ATTCCTTTTGCAGGCAATCGACGTCAATCCTTTGTGCGCGGAAGCGCACG
TCGGCCTCGCCGCCGTCATGCTTGCCCGCGACGACGCTGCCGCCGAGAGT
AGCGGCGGCGGCGGCGGCGGCGACGGCGGCTATGGTGGCGGCGTGACGGT
AGCCGCAGGGGAGGCGTCCGCTGCCGAGACGGCGGACGCGGTCGCGGCGT
GCCTCAACACGGTGCTTCGCATCGACCCTGCCAACGAGGCGGCGCTGAGT
CTGCTGCGAGAGCTGACTGGCGGCGGCCGCTCGAGGCTGCTAAGTCCCTC
CTTAGTGGCATGCGAGGGCGATTGAAGGATACTCATGCGGTTATTAGCAC
GTAGAAGTCAAAGCACGGCCAGCTTATAGCATAGACTGAAGCACTTGTCT
TTCCGTTCCCATTTCCAGGACTTGATATGGATGCTACAAACGACAGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7328:223..3121-

>mRNA_P-wetherbeei_contig7328.1.1 ID=mRNA_P-wetherbeei_contig7328.1.1|Name=mRNA_P-wetherbeei_contig7328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1170bp|location=Sequence derived from alignment at P-wetherbeei_contig7328:223..3121- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCGAAACAGGAGTACGGCCGTCTTGCCGCCGCCACCCTCAGCGCC
GGGCGACGCCGCGGTGCCAGTCACACCGCCGTCGCCGCGGCCTCTGGGAC
TCTCGTCGTTTACGACAGCAGGGGCTGCTGCAACGCGGATGCCGCGCTGC
GCCCGCAAGCTGCGGGAAGAGGCACTTTCGGTCTTGTGGCCGCAGGCGCG
ACGCCTCAACGCGGCAGCTGCGCGCGCGGCGACAAATCCGGCAGCATTAA
CGGCGGCGATGACAGAGGCGCTGACACCACTGGAAGCCGCGCTGGAGGAG
CCCCTCCGCCACGGGCAGGTCCTGCTTCAGATGGCGCGGGCGCTGCAGGA
AGATGCCGCCGTCGCCGCGGCTGCAGGCACCGGCGCTGGCACCGCCGCCG
GCAGCGACACCACCGCCACCGAGGAGGAGGCGGCGGTCTGCCTCGCTGCC
GCGGCGCGGTTGGAGCCACCGCGCCCCGACGTGCTCTTCGCGTACGCCTT
CGCGCTGTACCGTGCGGGGGACGCCGTGGGGGCCGAGGCGAGCTATCTGA
ATCTTCTGTCGATGGAGCCGGGTCATGCGGCAGCATGGTACAACCTGGGG
TACATGGCCTCCGCCGCCGGCGACGCCGAGGCGGCGGTCGACCGCTTCGT
GCGGGCCGCGGCATGCGCACCGGACGATGCCGAGATCCGCGTACACCTCG
GAAACGCGCACAAGGACTGCGGGGAGGCCGAGGCGGCAGCGGAGTGCTAC
CGCCACGCGGCCCGGTTGGACCCGCAGAGCCTCGAGGCCAACTATAACCT
CGGGGTGGTGCTGCAGGCGGCCGGCCGCTGGGACGAGGCAATCGACAGCT
TTCGCAGGGCAATCGACGTCAATCCTTTGTGCGCGGAAGCGCACGTCGGC
CTCGCCGCCGTCATGCTTGCCCGCGACGACGCTGCCGCCGAGAGTAGCGG
CGGCGGCGGCGGCGGCGACGGCGGCTATGGTGGCGGCGTGACGGTAGCCG
CAGGGGAGGCGTCCGCTGCCGAGACGGCGGACGCGGTCGCGGCGTGCCTC
AACACGGTGCTTCGCATCGACCCTGCCAACGAGGCGGCGCTGAGTCTGCT
GCGAGAGCTGACTGGCGGCGGCCGCTCGAGGCTGCTAAGTCCCTCCTTAG
TGGCATGCGAGGGCGATTGA
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