mRNA_P-wetherbeei_contig73.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig73.7.1
Unique NamemRNA_P-wetherbeei_contig73.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig73.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig73contigP-wetherbeei_contig73:9859..13174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2490
Hectar predicted targeting categorysignal peptide
Exons4
Cds size2115
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig73.7.1prot_P-wetherbeei_contig73.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig73 10215..13155 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.8662043-UTR-P-wetherbeei_contig73:9858..102141683186970.8662043-UTR-P-wetherbeei_contig73:9858..10214Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig73 9859..10214 -
1683186970.9186862-UTR-P-wetherbeei_contig73:13155..131741683186970.9186862-UTR-P-wetherbeei_contig73:13155..13174Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig73 13156..13174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.8757312-CDS-P-wetherbeei_contig73:10214..103321683186970.8757312-CDS-P-wetherbeei_contig73:10214..10332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig73 10215..10332 -
1683186970.8844895-CDS-P-wetherbeei_contig73:10560..115221683186970.8844895-CDS-P-wetherbeei_contig73:10560..11522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig73 10561..11522 -
1683186970.8993034-CDS-P-wetherbeei_contig73:11822..125281683186970.8993034-CDS-P-wetherbeei_contig73:11822..12528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig73 11823..12528 -
1683186970.9081602-CDS-P-wetherbeei_contig73:12826..131551683186970.9081602-CDS-P-wetherbeei_contig73:12826..13155Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig73 12827..13155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig73.7.1

>prot_P-wetherbeei_contig73.7.1 ID=prot_P-wetherbeei_contig73.7.1|Name=mRNA_P-wetherbeei_contig73.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=705bp
MGRSLCAAALLLSCLLIVPAFHLAPRLPPRKELTCKATNERGAAAAALII
LSSFQLGAPLTALAGDAAVERSPFMEAFDRVKFLPIISPEEREKLSRIAP
ALPNQADAQRVARRSLQDLKMAPADVLLGHEMPSPPPPGRTFNPTDDAVA
VGKEMVSVASAAASVAADAAAVALHAVGLDDEAVATAAAVAAVVSKPLPP
LVVPVAPSARLPPPAVAGRWARLTERLVAAVDRDVAAALQQQQQQQQLQR
DDGSDFKGFNGGGGSADFSAAAAAAAAEGSATLAAAAAGVVNAVGDAFRG
ESAVDLLGLREAPVWKDVEGIAAAASEAEAKLPTAEALQSQIAESFKRIE
GMTRNIETAVTETASARIAVARSFSLPKPPALDGLRLPTELPVRKLWPLP
AVPSLPSLPSLLTLPVMPALPSMPAMPAHPAIPAVPAVDLSGMLGSAPEA
QQNILAAAALAVAAVGVAGAAAARSGGTATSSTAPLYPEAASSVAAGSTA
TAERRAASGANGARINGAAPNEPIRLAEPAIMTTDDAVVATELLWNLVRE
SGAELAATGTTAVTAAAVATAAATVYDEVYLPVSDGPVAEFSTAEEAEDE
TEEEEEEEGAAVEQLQMSVEGSSSDADEGAGASSDGDESGKGEGDDLQRD
LSKLRREVEGLLGALRGRDLLAESRQLQQQISSLRALKPQDKTSVLQDAQ
EDIR*
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mRNA from alignment at P-wetherbeei_contig73:9859..13174-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig73.7.1 ID=mRNA_P-wetherbeei_contig73.7.1|Name=mRNA_P-wetherbeei_contig73.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3316bp|location=Sequence derived from alignment at P-wetherbeei_contig73:9859..13174- (Phaeothamnion wetherbeei SAG_119_79)
ACGCATTCTTTTCCCGCCGATGGGGCGATCTCTCTGCGCAGCAGCATTGC
TGCTGTCATGCCTGCTTATTGTGCCAGCCTTCCACCTTGCGCCACGGCTT
CCGCCACGAAAAGAGTTGACATGCAAAGCGACAAATGAGAGAGGTGCGGC
GGCTGCCGCTCTCATCATCCTCAGCAGTTTTCAGCTCGGCGCCCCTCTCA
CTGCATTGGCCGGTGATGCCGCGGTGGAGCGATCGCCTTTTATGGAGGCC
TTCGACCGGGTGAAGTTTTTGCCAATTATTTCGCCCGAAGAAAGGGAAAA
GCTATCCCGCATAGCACCAGCGTTGCCCAATCAGGCCGATGCACAAAGGC
AAGTCCCGCGGAGAAGAGTTGGGGATGCTGATTCTTCTCTGATATTACCG
CCGCAGCATTGGTTCCGGAACGCGAGAGAGATTGCCAGTTGGCATTTTTC
CCGCAACCGAGCGCAAGACAGAAAGGAGAACGCGAAAGGTCACAGCACTG
ATTTCCTAGAAGGAAAAGGAGGAAATTGACAATTGTCTTTTTCTTTTGCG
CAGGTGTGCTTACTGAGGATATCCGTTATTAACCATTAACCAAATGCCAT
CCATCTCTTATCTCAAACCATATGCAACTCGACAAAACAATGTCAGGGTT
GCGCGGCGGAGCTTGCAGGACCTGAAGATGGCGCCAGCCGACGTCCTCCT
CGGTCACGAGATGCCATCACCGCCTCCGCCGGGACGAACCTTCAACCCCA
CAGACGACGCCGTCGCCGTCGGCAAGGAGATGGTGTCCGTCGCCTCCGCC
GCCGCCTCGGTCGCCGCCGACGCCGCCGCCGTCGCCCTCCACGCCGTCGG
ACTCGACGATGAGGCGGTGGCGACCGCAGCGGCGGTTGCCGCGGTGGTGT
CCAAGCCACTGCCACCGCTTGTCGTGCCGGTGGCGCCTTCGGCACGGCTG
CCGCCGCCGGCGGTCGCGGGCCGCTGGGCGAGACTGACGGAGCGGCTTGT
GGCCGCCGTGGACCGGGATGTCGCGGCAGCGCTGCAGCAGCAGCAGCAGC
AGCAACAGCTGCAGAGGGACGACGGCAGTGACTTCAAAGGCTTCAACGGC
GGCGGCGGCAGCGCCGACTTTAGCGCCGCGGCTGCCGCGGCTGCCGCCGA
GGGATCGGCGACGCTGGCGGCGGCGGCGGCGGGCGTGGTGAACGCGGTTG
GCGACGCCTTCAGGGGGGAGAGCGCGGTGGACCTACTGGGGCTGCGCGAA
GCTCCCGTCTGGAAGGACGTCGAGGGCATCGCCGCTGCCGCTTCGGAGGC
GGAGGCGAAGCTGCCGACGGCAGAGGCTCTTCAGAGTCAAATCGCCGAAT
CGGTGCATGCGTAGCTTTTGCCATTCTTTGTTTCTGGGGGTTCCTGTTCT
AGTTACGGAGCCGCTTTGTCCTTTCGGCCTCATTGTGCTGGTCATCCTTA
TGGACCTTATGGAGCAGGTTCCTCCTGAAAAGCTTTTAACGTCGCAGGGA
TGAGCTCTGTTCTTGATCTTTTGCTACTGCATTCTCGAGTGTTGGTCTGC
TAAGGAGTGGGTAAGCAGATGTTGTCTTTCATGCTTTCTCTTTACACCCT
GAAGCACCGTTCCGCTGCCCGCTGCACGCCGCTTGCTGTAAATGAACCGC
AGTTTAAGAGAATAGAGGGGATGACTCGCAACATTGAAACGGCCGTCACC
GAAACGGCGTCGGCGCGGATCGCCGTGGCGCGCTCCTTCTCGCTGCCCAA
ACCGCCGGCGCTAGACGGCCTGCGGCTCCCGACCGAGCTGCCCGTCAGAA
AGCTGTGGCCGCTTCCAGCTGTCCCGTCTCTGCCGTCCCTGCCGTCGCTG
CTGACTCTCCCGGTAATGCCGGCGCTCCCGTCAATGCCGGCAATGCCGGC
GCATCCGGCGATTCCGGCGGTTCCTGCTGTTGATTTGTCAGGGATGCTCG
GGTCCGCTCCGGAAGCGCAGCAGAATATTCTGGCCGCGGCTGCTCTGGCC
GTAGCAGCCGTCGGGGTGGCCGGAGCCGCGGCGGCACGGAGTGGTGGTAC
TGCCACTTCTTCTACCGCTCCTCTATACCCTGAAGCGGCGTCCTCGGTTG
CTGCGGGGTCGACGGCGACGGCGGAACGGCGTGCTGCTTCCGGTGCCAAC
GGCGCGAGAATTAATGGCGCGGCACCGAACGAGCCCATAAGGCTTGCAGA
ACCGGCCATAATGACGACGGATGATGCTGTGGTGGCCACAGAGCTGCTGT
GGAACCTCGTGCGGGAGAGCGGCGCTGAATTAGCCGCTACCGGCACCACC
GCCGTCACCGCCGCTGCCGTGGCCACTGCCGCCGCCACTGTTTACGATGA
AGTCTACCTCCCGGTTTCCGACGGCCCGGTGGCGGAGTTTTCGACGGCGG
AGGAGGCAGAGGACGAAACGGAGGAGGAGGAGGAGGAAGAGGGTGCCGCG
GTGGAGCAGTTGCAAATGAGTGTAGAGGGCAGCAGCAGCGATGCCGATGA
AGGCGCCGGCGCCAGCAGCGACGGCGACGAGTCAGGGAAGGGCGAAGGCG
ACGACTTGCAGCGGGATCTGAGTAAGCTTCGGAGAGAAGTCGAGGGGCTG
CTGGGAGCTTTGAGGTTAGTGGATTTTCGAGGTGTGGAGTCCAGGAAGGC
AGAGCGCTACATTCTAAACTATTGTCCCTTGTGTTCTTAGAGCTCCAGCT
TGTGAGCGACATGAGCGTGCTTCGCATGCTGGTCGACCCGTTTCTGGCAA
TTTTTTGCCTACAATGTTTTCCTCCTTGGGCCTTCCTGCCTTTCCATTTT
CTCACAACTACCGGGCAGTTTCTCCTCCCTCGCTGCCGACAGGGGCCGGG
ACCTCCTCGCGGAGTCTCGGCAGCTCCAGCAGCAGATTTCGTCGCTGCGG
GCGTTGAAGCCACAGGACAAGACTTCCGTGCTCCAGGACGCCCAGGAGGA
TATACGATGACCGCCCGACAGCGGTTGGCGCGGCCCGTGAAAAATGAAAT
AGGGGGAGGGAAACATTTCTCGAGTTTTATGAGGCAGGAGATCTGCGGCT
GATGATAATCTTTCATTTGTAAGGGGTGCCAGGGTGGGAGCGAAGCCGCG
GATAGCGGAAGGACGGGAGGACATTTGTACATGGAGGCATACCGTGGCTT
GAGCCTTGCAATGCGGCAGGACTTTGACTTGAAAGCAGGGGGGATGAAAA
ATAGTATTGAGGGTGTCAGGGCATCCTCATTTGAAGATTTGGCGACTTTT
CTATTGATGCAGCCGTATGTAAGCGAAACGTTCACCTCCTTCTTTCTCAC
AATCTTTTCTTTTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig73:9859..13174-

>mRNA_P-wetherbeei_contig73.7.1 ID=mRNA_P-wetherbeei_contig73.7.1|Name=mRNA_P-wetherbeei_contig73.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2115bp|location=Sequence derived from alignment at P-wetherbeei_contig73:9859..13174- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCGATCTCTCTGCGCAGCAGCATTGCTGCTGTCATGCCTGCTTAT
TGTGCCAGCCTTCCACCTTGCGCCACGGCTTCCGCCACGAAAAGAGTTGA
CATGCAAAGCGACAAATGAGAGAGGTGCGGCGGCTGCCGCTCTCATCATC
CTCAGCAGTTTTCAGCTCGGCGCCCCTCTCACTGCATTGGCCGGTGATGC
CGCGGTGGAGCGATCGCCTTTTATGGAGGCCTTCGACCGGGTGAAGTTTT
TGCCAATTATTTCGCCCGAAGAAAGGGAAAAGCTATCCCGCATAGCACCA
GCGTTGCCCAATCAGGCCGATGCACAAAGGGTTGCGCGGCGGAGCTTGCA
GGACCTGAAGATGGCGCCAGCCGACGTCCTCCTCGGTCACGAGATGCCAT
CACCGCCTCCGCCGGGACGAACCTTCAACCCCACAGACGACGCCGTCGCC
GTCGGCAAGGAGATGGTGTCCGTCGCCTCCGCCGCCGCCTCGGTCGCCGC
CGACGCCGCCGCCGTCGCCCTCCACGCCGTCGGACTCGACGATGAGGCGG
TGGCGACCGCAGCGGCGGTTGCCGCGGTGGTGTCCAAGCCACTGCCACCG
CTTGTCGTGCCGGTGGCGCCTTCGGCACGGCTGCCGCCGCCGGCGGTCGC
GGGCCGCTGGGCGAGACTGACGGAGCGGCTTGTGGCCGCCGTGGACCGGG
ATGTCGCGGCAGCGCTGCAGCAGCAGCAGCAGCAGCAACAGCTGCAGAGG
GACGACGGCAGTGACTTCAAAGGCTTCAACGGCGGCGGCGGCAGCGCCGA
CTTTAGCGCCGCGGCTGCCGCGGCTGCCGCCGAGGGATCGGCGACGCTGG
CGGCGGCGGCGGCGGGCGTGGTGAACGCGGTTGGCGACGCCTTCAGGGGG
GAGAGCGCGGTGGACCTACTGGGGCTGCGCGAAGCTCCCGTCTGGAAGGA
CGTCGAGGGCATCGCCGCTGCCGCTTCGGAGGCGGAGGCGAAGCTGCCGA
CGGCAGAGGCTCTTCAGAGTCAAATCGCCGAATCGTTTAAGAGAATAGAG
GGGATGACTCGCAACATTGAAACGGCCGTCACCGAAACGGCGTCGGCGCG
GATCGCCGTGGCGCGCTCCTTCTCGCTGCCCAAACCGCCGGCGCTAGACG
GCCTGCGGCTCCCGACCGAGCTGCCCGTCAGAAAGCTGTGGCCGCTTCCA
GCTGTCCCGTCTCTGCCGTCCCTGCCGTCGCTGCTGACTCTCCCGGTAAT
GCCGGCGCTCCCGTCAATGCCGGCAATGCCGGCGCATCCGGCGATTCCGG
CGGTTCCTGCTGTTGATTTGTCAGGGATGCTCGGGTCCGCTCCGGAAGCG
CAGCAGAATATTCTGGCCGCGGCTGCTCTGGCCGTAGCAGCCGTCGGGGT
GGCCGGAGCCGCGGCGGCACGGAGTGGTGGTACTGCCACTTCTTCTACCG
CTCCTCTATACCCTGAAGCGGCGTCCTCGGTTGCTGCGGGGTCGACGGCG
ACGGCGGAACGGCGTGCTGCTTCCGGTGCCAACGGCGCGAGAATTAATGG
CGCGGCACCGAACGAGCCCATAAGGCTTGCAGAACCGGCCATAATGACGA
CGGATGATGCTGTGGTGGCCACAGAGCTGCTGTGGAACCTCGTGCGGGAG
AGCGGCGCTGAATTAGCCGCTACCGGCACCACCGCCGTCACCGCCGCTGC
CGTGGCCACTGCCGCCGCCACTGTTTACGATGAAGTCTACCTCCCGGTTT
CCGACGGCCCGGTGGCGGAGTTTTCGACGGCGGAGGAGGCAGAGGACGAA
ACGGAGGAGGAGGAGGAGGAAGAGGGTGCCGCGGTGGAGCAGTTGCAAAT
GAGTGTAGAGGGCAGCAGCAGCGATGCCGATGAAGGCGCCGGCGCCAGCA
GCGACGGCGACGAGTCAGGGAAGGGCGAAGGCGACGACTTGCAGCGGGAT
CTGAGTAAGCTTCGGAGAGAAGTCGAGGGGCTGCTGGGAGCTTTGAGGGG
CCGGGACCTCCTCGCGGAGTCTCGGCAGCTCCAGCAGCAGATTTCGTCGC
TGCGGGCGTTGAAGCCACAGGACAAGACTTCCGTGCTCCAGGACGCCCAG
GAGGATATACGATGA
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