mRNA_P-wetherbeei_contig729.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig729.3.1
Unique NamemRNA_P-wetherbeei_contig729.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: D8LGM2_ECTSI (20S proteasome alpha subunit G n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGM2_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.820e-37
Identity = 73/143 (51.05%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  307 TADDLYDS-PNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASY 732
            +A+  YDS   VFSP+GRL QL+Y E +VK+GNLCIG  C DG VL   KL  ++ A L+ + G+  R++ VD HIG++ AGLPADGRALA  A E  R+HRREYGEPI  ++LA+++   +H+  ++W  R YPNAL +A +
Sbjct:   27 SAESAYDSNKGVFSPKGRLVQLDYVEGLVKRGNLCIGAECKDGVVLMTNKLVTADAAKLLVDGGT-RRVFRVDSHIGILPAGLPADGRALAHKAMEYCRSHRREYGEPIPGRLLAERLGEFIHAACVRWGSRAYPNALFVACW 168          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: A0A835ZBF0_9STRA (Nucleophile aminohydrolase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF0_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.160e-33
Identity = 97/260 (37.31%), Postives = 135/260 (51.92%), Query Frame = 1
Query:  259 AALPLCLVLSRGAAHPTADDLYDSP-NVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPA----GITCGEAVSQIAAL 1023
            AAL  CL     AA   AD  YD   NVFSPQG+L Q EYA   V +G  C+G+SCSDG VLA++KL+ ++  +L  E  S  RIY V   +G++ AGL ADGR +   A EL R HR  YGEP++ +VLA Q+   LH  SL+   RP   + L+A     D +E  AG+G  S                             + L++V  SG    + ACC+G  +  V   + +W+       G+TC +A+S++A+L
Sbjct:    3 AALLSCLCSHATAA--IADGPYDKAGNVFSPQGKLLQSEYARLAVNRGATCVGMSCSDGTVLAIRKLSQAKTPSLKPER-STRRIYRVGDAVGVLPAGLSADGRFVGATAAELVRRHRASYGEPLSGRVLAVQLGVFLHMLSLERALRPLATSALVACCTEQDCEE--AGQGDRSSAQQAA--------------------AAAAELWLVDVSGDVQGYVACCVGQHAEAV---MERWRTNKYMFDGVTCRQALSEVASL 234          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: A0A067BVI4_SAPPC (PROTEASOME_ALPHA_1 domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BVI4_SAPPC)

HSP 1 Score: 132 bits (333), Expect = 1.970e-32
Identity = 82/244 (33.61%), Postives = 127/244 (52.05%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP GR+ Q+EYA++ V+     IG+ C+DG V+ V+K+ LS++       G+  R++ +DRHIGL  AGL ADGR L   A E A  +++ YG PI  QVLAD+M+ ++H  +L  + RP+  ++++A  DV                                       G C  N  V++ SGVS+R+R C +G G    +T++ K+K    +TC EA+  IA +   L + ++
Sbjct:    8 YDLSVGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLV----PGTHRRVHAIDRHIGLAMAGLVADGRQLVNRAREEASGYKKNYGSPIPPQVLADRMSQYVHYFTLYGSVRPFGTSIMLAGRDV-------------------------------------DTGKCYLN--VIEPSGVSYRFRGCAMGKGEQAAKTEIEKYKI-FDMTCREAIKYIAKILNVLHDEVK 207          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: K3W7I2_GLOUD (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7I2_GLOUD)

HSP 1 Score: 130 bits (328), Expect = 1.110e-31
Identity = 78/244 (31.97%), Postives = 124/244 (50.82%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP GR+ Q+EYA++ V+     IG+ C+DG ++ V+K  LS++       G+  R+Y +DRH+GL  AGL ADGR L   A E A ++++ YG  I   VLAD+M  ++H  +L  + RP+  ++++A YD  ++  S                                       LY V+ SGV++ +R C IG G    +T++ K+K    +TC EA+  +A +   L + +R
Sbjct:    8 YDLSAGTFSPDGRIFQVEYAKKAVENSGTAIGIKCTDGIIMGVEKTLLSKMLVA----GTHRRVYAIDRHVGLSMAGLVADGRQLVNRAREEALSYKKNYGSAIPPHVLADRMGQYVHYYTLYGSIRPFGTSIMLAGYDADEKKPS---------------------------------------LYCVEPSGVTYSYRGCAIGKGQQAAKTEIEKYKL-FDMTCREAMKYVAKILHTLHDEVR 207          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: H3G9D2_PHYRM (PROTEASOME_ALPHA_1 domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3G9D2_PHYRM)

HSP 1 Score: 130 bits (328), Expect = 1.140e-31
Identity = 80/244 (32.79%), Postives = 128/244 (52.46%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP+GR+ Q+EYA++ V+     IG+ C+DG ++ V+K  LS++       G+  R+Y +DRH+GL  AGL ADGR L   A E A  +R+ YG  I  Q+LA++M   +H  +L  + RP+  A+++A YD   +D +                                    +S+LYVV+ SGV++ +R C +G G    +T++ K+K    +TC EA+  +A +   L + +R
Sbjct:    8 YDYSAGTFSPEGRIFQVEYAKKAVENSGTTIGIKCTDGIIMGVEKTLLSKMLV----PGTHRRVYAIDRHVGLSMAGLVADGRQLVNRAREEALNYRKNYGCSIPPQLLAERMGQFVHYYTLYGSIRPFGTAIMLAGYD---QDTN------------------------------------KSSLYVVEPSGVTYSYRGCALGKGQQSAKTEIEKYKL-FDMTCREAMKYVAKILNTLHDEVR 207          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: A0A1W0AAI8_9STRA (Proteasome subunit alpha type-3 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1W0AAI8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.040e-31
Identity = 81/244 (33.20%), Postives = 126/244 (51.64%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP GR+ Q+EYA++ V+     IG+ C+DG V+ V+K+ LS++       G+  RI+ VDRH+GL  AGL ADGR L   A E A  +++ YG  I  Q+LAD+M+ ++H  +L  + RP+  ++++A  DV                                       G C  N  V++ SGVS+R+R C +G G    +T++ K+K    +TC EA+  IA +   L + ++
Sbjct:    8 YDLSAGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLV----PGTHRRIHAVDRHVGLAMAGLVADGRQLVNRAREEASGYKKNYGSAIPPQILADRMSQYVHYFTLYGSVRPFGTSIMLAGRDV-------------------------------------DTGKCYLN--VIEPSGVSYRFRGCAMGKGEQAAKTEIEKYKI-FDMTCREAIKYIAKILNVLHDEVK 207          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: A0A6A3SMG4_9STRA (PROTEASOME_ALPHA_1 domain-containing protein (Fragment) n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3SMG4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.010e-31
Identity = 80/244 (32.79%), Postives = 128/244 (52.46%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP+GR+ Q+EYA++ V+     IG+ C+DG ++ V+K  LS++  L    G+  RIY +DRH+GL  AGL ADGR L   A E A  +R+ YG  I   +LA++M   +H  +L  + RP+  A+++A YD   +D +                                    +S+LY+V+ SGV++ +R C +G G    +T++ K+K    +TC EA+  +A +   L + +R
Sbjct:   34 YDYSAGTFSPEGRIFQVEYAKKAVENSGTTIGIKCTDGIIMGVEKTLLSKMLVL----GTHRRIYAIDRHVGLSMAGLVADGRQLVNRAREEALNYRKNYGCSIPPHLLAERMGQFVHYFTLYGSIRPFGTAIMLAGYD---QDAN------------------------------------KSSLYMVEPSGVTYSYRGCALGKGQQSAKTEIEKYKL-FDMTCREAMKYVAKILNTLHDEVR 233          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: A0A024GPT3_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GPT3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.880e-29
Identity = 78/244 (31.97%), Postives = 122/244 (50.00%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP GR+ Q+EYA++ V+     IG+ CSDG ++ V+K  +S++       G+  RI+ VD HIG+  AGL ADGR L   A E A  +++ YG PI   VLAD+M  ++H  +L  + RP+   ++IA YD   +DE+                                    +  LY ++ SGV+  +R C +G G    +T++ K+K    + C EA+  +A +   L + +R
Sbjct:    7 YDLSAGTFSPDGRIFQVEYAKKAVENSGTTIGIKCSDGVIIGVEKKLVSKMLVT----GTHRRIFAVDHHIGVSMAGLVADGRQLVNRAREEALNYKKNYGSPIPPHVLADRMGQYIHYYTLYGSVRPFGATIMIAGYD---QDEN------------------------------------QHKLYQIEPSGVTFSFRGCAMGKGEQAAKTEIEKYKL-FDLPCREAMKYVAKILNVLHDELR 206          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: A0A6A3N6M9_9STRA (Purple acid phosphatase n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N6M9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.390e-28
Identity = 79/244 (32.38%), Postives = 127/244 (52.05%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP+GR+ Q+EYA++ V+     IG+ C+DG ++ V+K  LS++       G+  RIY +DRH+GL  AGL ADGR L   A E A  +R+ YG  I   +LA++M   +H  +L  + RP+  A+++A YD   +D +                                    +S+LY+V+ SGV++ +R C +G G    +T++ K+K    +TC EA+  +A +   L + +R
Sbjct:  722 YDYSAGTFSPEGRIFQVEYAKKAVENSGTTIGIKCTDGIIMGVEKTLLSKMLV----PGTHRRIYAIDRHVGLSMAGLVADGRQLVNRAREEALNYRKNYGCSIPPHLLAERMGQFVHYYTLYGSIRPFGTAIMLAGYD---QDAN------------------------------------KSSLYMVEPSGVTYSYRGCALGKGQQSAKTEIEKYKL-FDMTCREAMKYVAKILNTLHDEVR 921          
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Match: A0A3R7NM45_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NM45_9STRA)

HSP 1 Score: 126 bits (317), Expect = 8.810e-28
Identity = 78/244 (31.97%), Postives = 126/244 (51.64%), Query Frame = 1
Query:  322 YD-SPNVFSPQGRLRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHRIYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQMAAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGXXXXXXXXXXXXXXXXXXXXXXXGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQLVKWKAPAGITCGEAVSQIAALARQLPEGMR 1050
            YD S   FSP+GR+ Q+EYA + V+     IG+ C+DG ++ V+K  LS++       G+  RIY +DRHIGL  AGL ADGR L   A E A  +++ YG  I   +L+++M   +H  +L  + RP+  A+++A YD   +DE                                     +++LY+V+ SGV++ +R C +G G    +T++ K+K    +TC EA+  +A +   L + +R
Sbjct:  475 YDYSAGTFSPEGRIFQVEYARKAVENSGTTIGIKCTDGIIMGVEKTLLSKMLV----PGTHRRIYAIDRHIGLSMAGLVADGRQLVNRAREEALNYKKNYGCSIPPHLLSERMGQFVHYYTLYGSIRPFGTAIMLAGYD---QDEK------------------------------------KTSLYMVEPSGVTYSYRGCALGKGQQSAKTEIEKYKI-FDMTCREAMKYVAKILNTLHDEVR 674          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig729.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGM2_ECTSI3.820e-3751.0520S proteasome alpha subunit G n=2 Tax=Ectocarpus ... [more]
A0A835ZBF0_9STRA1.160e-3337.31Nucleophile aminohydrolase (Fragment) n=1 Tax=Trib... [more]
A0A067BVI4_SAPPC1.970e-3233.61PROTEASOME_ALPHA_1 domain-containing protein n=4 T... [more]
K3W7I2_GLOUD1.110e-3131.97PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
H3G9D2_PHYRM1.140e-3132.79PROTEASOME_ALPHA_1 domain-containing protein n=22 ... [more]
A0A1W0AAI8_9STRA2.040e-3133.20Proteasome subunit alpha type-3 n=2 Tax=Saprolegni... [more]
A0A6A3SMG4_9STRA4.010e-3132.79PROTEASOME_ALPHA_1 domain-containing protein (Frag... [more]
A0A024GPT3_9STRA3.880e-2931.97PROTEASOME_ALPHA_1 domain-containing protein n=2 T... [more]
A0A6A3N6M9_9STRA3.390e-2832.38Purple acid phosphatase n=3 Tax=Phytophthora rubi ... [more]
A0A3R7NM45_9STRA8.810e-2831.97PROTEASOME_ALPHA_1 domain-containing protein n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig729contigP-wetherbeei_contig729:6083..7356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGM2
Preferred namePAG1
PFAMsProteasome,Proteasome_A_N
Model size1274
Max annot lvl2759|Eukaryota
KEGG koko:K02727
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0031090,GO:0031597,GO:0032991,GO:0034515,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051603,GO:0071704,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons1
Evalue1.14e-38
EggNOG OGsCOG0638@1|root,KOG0184@2759|Eukaryota
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-10_002750.1
EC3.4.25.1
DescriptionThe proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Cds size1050
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.5632117-UTR-P-wetherbeei_contig729:6082..62891683186970.5632117-UTR-P-wetherbeei_contig729:6082..6289Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig729 6083..6289 +
1683186970.585185-UTR-P-wetherbeei_contig729:7339..73561683186970.585185-UTR-P-wetherbeei_contig729:7339..7356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig729 7340..7356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186970.5755093-CDS-P-wetherbeei_contig729:6289..73391683186970.5755093-CDS-P-wetherbeei_contig729:6289..7339Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig729 6290..7339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig729.3.1prot_P-wetherbeei_contig729.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig729 6290..7339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig729.3.1

>prot_P-wetherbeei_contig729.3.1 ID=prot_P-wetherbeei_contig729.3.1|Name=mRNA_P-wetherbeei_contig729.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=350bp
MKRSSRTRRRPWNWTGFAALPLCLVLSRGAAHPTADDLYDSPNVFSPQGR
LRQLEYAEEVVKKGNLCIGVSCSDGAVLAVQKLTLSEIATLIGEEGSGHR
IYPVDRHIGLIAAGLPADGRALARCANELARAHRREYGEPIAAQVLADQM
AAHLHSTSLQWNKRPYPNALLIASYDVLDEDESCAGKGVGSGGSGSSGDG
RDGIGGGDNGSSNCRSGGCRSNLYVVQTSGVSHRWRACCIGLGSAEVRTQ
LVKWKAPAGITCGEAVSQIAALARQLPEGMRGQKNVVAELEVATVMRSGF
RLLSTAAIRAAAAQNHADASGYNGGGTACAAKELGAEAQDASADKADIT*
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mRNA from alignment at P-wetherbeei_contig729:6083..7356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig729.3.1 ID=mRNA_P-wetherbeei_contig729.3.1|Name=mRNA_P-wetherbeei_contig729.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1274bp|location=Sequence derived from alignment at P-wetherbeei_contig729:6083..7356+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGTGGAGTTGTAATACCTCATACTTCGACAGTGATTGACCAGAGGAA ATCGTAGATTCAAGGCTGAGAGGGTGTGAAGGGCTCAGGTGAGCAAAATA TCTAGCTCCAAGGCCTCACCAACCCACGCCCAATAATCGTATGCCAGTCT GAGCACTCTGAGGACACTTTGCACCATTTTCACTTCCTTCGGATCACTGC AAAAAAGATGAAAAGAAGCAGCAGGACACGTCGCCGACCCTGGAACTGGA CGGGGTTCGCGGCGCTCCCTCTATGCCTTGTCCTGTCGCGCGGGGCTGCG CATCCTACTGCTGATGATCTTTACGACAGCCCCAATGTCTTCAGTCCTCA GGGGCGGCTCCGGCAGCTGGAGTACGCTGAGGAGGTCGTCAAAAAGGGTA ACCTCTGCATCGGCGTCAGCTGCAGCGACGGGGCGGTGCTCGCAGTCCAA AAGCTAACTCTTTCCGAGATTGCGACGCTGATCGGTGAAGAAGGGTCTGG ACACCGCATATACCCCGTCGACCGGCATATCGGTTTGATCGCTGCCGGCC TACCCGCGGATGGCAGAGCGCTTGCACGGTGCGCCAATGAACTCGCCAGG GCGCACAGGCGCGAGTACGGAGAGCCGATCGCCGCCCAGGTCTTGGCGGA CCAGATGGCGGCGCACCTGCACTCAACGTCGCTTCAATGGAACAAGCGGC CGTATCCAAATGCATTGCTGATTGCGAGCTACGATGTTCTTGATGAAGAC GAATCTTGCGCTGGCAAGGGAGTTGGAAGTGGCGGCAGCGGCAGCAGCGG CGATGGCAGGGACGGCATTGGCGGTGGCGACAACGGCAGCAGCAATTGCA GAAGCGGCGGCTGCCGCAGCAATCTCTACGTCGTGCAAACAAGTGGCGTG TCGCACCGGTGGCGGGCCTGCTGCATTGGCCTGGGCAGCGCCGAGGTCCG GACGCAGCTGGTGAAATGGAAAGCCCCGGCGGGCATCACTTGCGGCGAAG CCGTATCACAAATCGCTGCGCTGGCCCGCCAGCTGCCTGAGGGCATGCGT GGCCAGAAGAACGTGGTGGCGGAGCTCGAAGTGGCGACCGTGATGCGTAG CGGCTTCCGGCTGCTCAGCACAGCCGCGATCCGCGCCGCTGCCGCACAAA ACCACGCGGACGCCAGTGGGTACAACGGTGGCGGCACTGCCTGCGCAGCA AAGGAGCTCGGCGCGGAGGCCCAAGACGCCAGCGCAGACAAAGCAGACAT AACGTAACCCGACGCTTATACCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig729:6083..7356+

>mRNA_P-wetherbeei_contig729.3.1 ID=mRNA_P-wetherbeei_contig729.3.1|Name=mRNA_P-wetherbeei_contig729.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1050bp|location=Sequence derived from alignment at P-wetherbeei_contig729:6083..7356+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAGAAGCAGCAGGACACGTCGCCGACCCTGGAACTGGACGGGGTT
CGCGGCGCTCCCTCTATGCCTTGTCCTGTCGCGCGGGGCTGCGCATCCTA
CTGCTGATGATCTTTACGACAGCCCCAATGTCTTCAGTCCTCAGGGGCGG
CTCCGGCAGCTGGAGTACGCTGAGGAGGTCGTCAAAAAGGGTAACCTCTG
CATCGGCGTCAGCTGCAGCGACGGGGCGGTGCTCGCAGTCCAAAAGCTAA
CTCTTTCCGAGATTGCGACGCTGATCGGTGAAGAAGGGTCTGGACACCGC
ATATACCCCGTCGACCGGCATATCGGTTTGATCGCTGCCGGCCTACCCGC
GGATGGCAGAGCGCTTGCACGGTGCGCCAATGAACTCGCCAGGGCGCACA
GGCGCGAGTACGGAGAGCCGATCGCCGCCCAGGTCTTGGCGGACCAGATG
GCGGCGCACCTGCACTCAACGTCGCTTCAATGGAACAAGCGGCCGTATCC
AAATGCATTGCTGATTGCGAGCTACGATGTTCTTGATGAAGACGAATCTT
GCGCTGGCAAGGGAGTTGGAAGTGGCGGCAGCGGCAGCAGCGGCGATGGC
AGGGACGGCATTGGCGGTGGCGACAACGGCAGCAGCAATTGCAGAAGCGG
CGGCTGCCGCAGCAATCTCTACGTCGTGCAAACAAGTGGCGTGTCGCACC
GGTGGCGGGCCTGCTGCATTGGCCTGGGCAGCGCCGAGGTCCGGACGCAG
CTGGTGAAATGGAAAGCCCCGGCGGGCATCACTTGCGGCGAAGCCGTATC
ACAAATCGCTGCGCTGGCCCGCCAGCTGCCTGAGGGCATGCGTGGCCAGA
AGAACGTGGTGGCGGAGCTCGAAGTGGCGACCGTGATGCGTAGCGGCTTC
CGGCTGCTCAGCACAGCCGCGATCCGCGCCGCTGCCGCACAAAACCACGC
GGACGCCAGTGGGTACAACGGTGGCGGCACTGCCTGCGCAGCAAAGGAGC
TCGGCGCGGAGGCCCAAGACGCCAGCGCAGACAAAGCAGACATAACGTAA
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