mRNA_P-wetherbeei_contig728.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig728.2.1
Unique NamemRNA_P-wetherbeei_contig728.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig728.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig728contigP-wetherbeei_contig728:1362..2203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5722.XP_001315936.1
PFAMsAnk,Ank_2,Ank_4
Model size729
Max annot lvl2759|Eukaryota
KEGG koko:K06867,ko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.37e-08
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size480
COG categoryI
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.8756971-UTR-P-wetherbeei_contig728:1361..16101683186969.8756971-UTR-P-wetherbeei_contig728:1361..1610Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig728 1362..1610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.8854704-CDS-P-wetherbeei_contig728:1610..19791683186969.8854704-CDS-P-wetherbeei_contig728:1610..1979Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig728 1611..1979 +
1683186969.8939366-CDS-P-wetherbeei_contig728:2092..22031683186969.8939366-CDS-P-wetherbeei_contig728:2092..2203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig728 2093..2203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig728.2.1prot_P-wetherbeei_contig728.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig728 1611..2203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig728.2.1

>prot_P-wetherbeei_contig728.2.1 ID=prot_P-wetherbeei_contig728.2.1|Name=mRNA_P-wetherbeei_contig728.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MFSWLARSALGEAVAPVEPTRKFWSALFAGDDAAATLILENDCGTAEAKG
EELRKLAAAQESRLQRWGEGRDSVDCWSPDARSGLCPVHVVAARGLLRTI
DALAARGVNVNQRGPADNTPLHMAAHHGQAAAAARLLVLGADVALRNAQH
KRPVDVASAA
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mRNA from alignment at P-wetherbeei_contig728:1362..2203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig728.2.1 ID=mRNA_P-wetherbeei_contig728.2.1|Name=mRNA_P-wetherbeei_contig728.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=842bp|location=Sequence derived from alignment at P-wetherbeei_contig728:1362..2203+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCTTCCCACGGCGACTACTCTTGTCCAAAGCAGTGTGTCATGTGCGAG
GCGTGCTATCTTTTTGCCTCGTTATAGCGCGCAGGTGTGAAACTACGCTC
GATAGATAATCACGAGAAGGGCTTCCGCCTGCTTGAGGCTTACAGCCTCT
TTCACTTTCCTCAAGCAACAGCTGAGGAGTTCCGCGAACCGTCTTACTAG
GGGAAGATTGGCTCTGCGTGTCCAGGCTCGACATTCCCCCAGCGCACCCA
TGTTCTCCTGGCTCGCTCGAAGCGCTCTTGGCGAGGCAGTGGCGCCTGTC
GAGCCCACGCGGAAGTTTTGGAGCGCGTTGTTTGCGGGCGACGATGCTGC
GGCGACCCTAATCCTGGAAAATGACTGCGGCACGGCCGAAGCCAAGGGAG
AAGAGCTGAGAAAGCTGGCGGCGGCACAGGAGTCGCGTCTCCAGCGGTGG
GGGGAAGGGCGCGATTCGGTGGACTGCTGGTCGCCCGACGCGCGTTCCGG
GCTCTGCCCCGTTCACGTCGTGGCAGCGCGTGGCCTCCTCCGCACTATCG
ACGCCCTGGCAGCGCGCGGCGTAAACGTGAACCAGCGAGGCCCGGCGGAC
AACACACCGTTGCACATGGTAAGCGCGACAGCGTGCGTTTCTGCAACCAA
AGCTGCCCTGAAATCCCCTCTTCAATCCTCGTATCGCGTCGCTTTTTATC
CCTTTTCCCCAACTCCCGTCCCTTTTTGCAGGCCGCCCACCACGGCCAGG
CGGCCGCGGCGGCCCGCCTCCTGGTTCTCGGCGCCGACGTCGCGCTCCGT
AATGCGCAGCACAAGCGGCCGGTCGACGTCGCTTCTGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig728:1362..2203+

>mRNA_P-wetherbeei_contig728.2.1 ID=mRNA_P-wetherbeei_contig728.2.1|Name=mRNA_P-wetherbeei_contig728.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig728:1362..2203+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCTCCTGGCTCGCTCGAAGCGCTCTTGGCGAGGCAGTGGCGCCTGT
CGAGCCCACGCGGAAGTTTTGGAGCGCGTTGTTTGCGGGCGACGATGCTG
CGGCGACCCTAATCCTGGAAAATGACTGCGGCACGGCCGAAGCCAAGGGA
GAAGAGCTGAGAAAGCTGGCGGCGGCACAGGAGTCGCGTCTCCAGCGGTG
GGGGGAAGGGCGCGATTCGGTGGACTGCTGGTCGCCCGACGCGCGTTCCG
GGCTCTGCCCCGTTCACGTCGTGGCAGCGCGTGGCCTCCTCCGCACTATC
GACGCCCTGGCAGCGCGCGGCGTAAACGTGAACCAGCGAGGCCCGGCGGA
CAACACACCGTTGCACATGGCCGCCCACCACGGCCAGGCGGCCGCGGCGG
CCCGCCTCCTGGTTCTCGGCGCCGACGTCGCGCTCCGTAATGCGCAGCAC
AAGCGGCCGGTCGACGTCGCTTCTGCCGCC
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