mRNA_P-wetherbeei_contig728.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig728.1.1
Unique NamemRNA_P-wetherbeei_contig728.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig728.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig728contigP-wetherbeei_contig728:599..1270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size672
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.8213258-UTR-P-wetherbeei_contig728:598..7821683186969.8213258-UTR-P-wetherbeei_contig728:598..782Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig728 599..782 -
1683186969.8408322-UTR-P-wetherbeei_contig728:1208..12701683186969.8408322-UTR-P-wetherbeei_contig728:1208..1270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig728 1209..1270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.8296387-CDS-P-wetherbeei_contig728:782..12081683186969.8296387-CDS-P-wetherbeei_contig728:782..1208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig728 783..1208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig728.1.1prot_P-wetherbeei_contig728.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig728 783..1208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig728.1.1

>prot_P-wetherbeei_contig728.1.1 ID=prot_P-wetherbeei_contig728.1.1|Name=mRNA_P-wetherbeei_contig728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MTYASPELLQRIKSQERRLHELESANAHLEEERRYDKAQIETLRMAVFEG
ATRAAEIIEQASTTFFFFPKFSPFFFSTLSHCVCVIRFPLSLGPEAAAGA
FSALYQCRRVNASVHDTIPRKGRSCLSFSFVDFYGDVCQLL*
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mRNA from alignment at P-wetherbeei_contig728:599..1270-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig728.1.1 ID=mRNA_P-wetherbeei_contig728.1.1|Name=mRNA_P-wetherbeei_contig728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig728:599..1270- (Phaeothamnion wetherbeei SAG_119_79)
TCCCGAAGCCCCCGATAGAGCCGTGTAGTTGTTCCGTTCAATTGCTCGCG
AACGTTTTTACCATGACTTACGCGTCCCCCGAGCTGCTTCAGAGGATAAA
GTCGCAGGAGCGGCGATTGCACGAGCTGGAAAGTGCGAATGCACATCTCG
AGGAGGAGCGAAGATATGACAAGGCCCAAATCGAGACGCTGCGTATGGCC
GTCTTTGAAGGAGCGACTAGAGCGGCAGAAATTATAGAGCAGGCGAGTAC
GACTTTTTTCTTCTTTCCCAAATTCTCCCCCTTTTTCTTTTCAACCCTTT
CGCACTGTGTCTGTGTGATTCGTTTTCCTTTATCACTTGGACCTGAAGCA
GCCGCCGGCGCATTCTCGGCCTTGTACCAGTGTCGGCGAGTGAATGCCAG
CGTCCATGATACTATCCCTAGAAAAGGACGGTCTTGCCTCTCTTTTTCCT
TCGTTGATTTTTACGGTGATGTGTGTCAGCTTTTGTAAACTACTAGTTCG
GCGCTGTTCGAACTGATAAGAATTGATTCGAAAACCGAAAGTTTTGTTTA
CAAGGGAACGAAAGTCGCTCCGTCACACTTCCCATCTTTCCCCACCCTTT
TCATACTTCCCGCTCAATTTCTTCACACAAACCTACAAACGCCCTTCCAG
TGCAAGCGGGATGCCGTCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig728:599..1270-

>mRNA_P-wetherbeei_contig728.1.1 ID=mRNA_P-wetherbeei_contig728.1.1|Name=mRNA_P-wetherbeei_contig728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig728:599..1270- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTACGCGTCCCCCGAGCTGCTTCAGAGGATAAAGTCGCAGGAGCG
GCGATTGCACGAGCTGGAAAGTGCGAATGCACATCTCGAGGAGGAGCGAA
GATATGACAAGGCCCAAATCGAGACGCTGCGTATGGCCGTCTTTGAAGGA
GCGACTAGAGCGGCAGAAATTATAGAGCAGGCGAGTACGACTTTTTTCTT
CTTTCCCAAATTCTCCCCCTTTTTCTTTTCAACCCTTTCGCACTGTGTCT
GTGTGATTCGTTTTCCTTTATCACTTGGACCTGAAGCAGCCGCCGGCGCA
TTCTCGGCCTTGTACCAGTGTCGGCGAGTGAATGCCAGCGTCCATGATAC
TATCCCTAGAAAAGGACGGTCTTGCCTCTCTTTTTCCTTCGTTGATTTTT
ACGGTGATGTGTGTCAGCTTTTGTAA
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