mRNA_P-wetherbeei_contig7276.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7276.2.1
Unique NamemRNA_P-wetherbeei_contig7276.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7276.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7276contigP-wetherbeei_contig7276:1484..2466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size984
Hectar predicted targeting categoryother localisation
Exons1
Cds size960
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.570833-CDS-P-wetherbeei_contig7276:1483..24431683186969.570833-CDS-P-wetherbeei_contig7276:1483..2443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7276 1484..2443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.5821698-UTR-P-wetherbeei_contig7276:2443..24661683186969.5821698-UTR-P-wetherbeei_contig7276:2443..2466Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7276 2444..2466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7276.2.1prot_P-wetherbeei_contig7276.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7276 1484..2443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7276.2.1

>prot_P-wetherbeei_contig7276.2.1 ID=prot_P-wetherbeei_contig7276.2.1|Name=mRNA_P-wetherbeei_contig7276.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=320bp
MRKQLSHQGIGNSEDPEMYFAGIEDMRAELADAGDPVSDEALKRLIVSNL
SGKYEIVQQTLLLGMTPYTLAELKDKIRACHQASLLKKHAVDASVNYSGY
SGGGGGSGRNNSGRRQGRPNRWFTGGRGGGDSGDGGNSRGGQQDRGQRDG
GNYHQRFGRAQQPAQHSSQERSRQDNGGGKGPRCYECNEMGHIKRNCPKR
GAGGATRSSARANQATEQPLHMHRVLVAERGPCRPSWLPGAGCNRSSARK
KGLWQGRGENHVNFIVDSGAAHTMVNDIGLLTNLKVCSHDIRGVGDTQFF
AKLSGDFSGNIFTSDGRRLK
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mRNA from alignment at P-wetherbeei_contig7276:1484..2466-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7276.2.1 ID=mRNA_P-wetherbeei_contig7276.2.1|Name=mRNA_P-wetherbeei_contig7276.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=983bp|location=Sequence derived from alignment at P-wetherbeei_contig7276:1484..2466- (Phaeothamnion wetherbeei SAG_119_79)
CTTCCGAGCTACGGTTGACGAAAATGCGCAAGCAGCTGTCGCATCAGGGG
ATCGGGAACTCCGAAGACCCTGAAATGTATTTTGCTGGTATTGAAGACAT
GCGGGCGGAACTGGCGGATGCCGGTGATCCCGTATCGGACGAAGCGCTCA
AAAGGCTAATCGTTTCGAATCTTTCCGGCAAGTACGAGATTGTGCAGCAA
ACTCTTCTCTTGGGCATGACGCCATACACACTGGCGGAGCTCAAAGACAA
GATCCGTGCGTGCCATCAAGCATCGCTTCTCAAGAAGCACGCTGTCGATG
CTTCTGTGAACTACAGCGGCTACAGCGGCGGCGGCGGAGGAAGCGGTAGA
AATAACAGCGGCCGGCGCCAGGGCCGCCCGAACCGCTGGTTTACCGGCGG
GAGGGGCGGCGGTGACAGCGGTGACGGCGGTAATAGCCGTGGCGGTCAGC
AAGACCGTGGCCAGCGGGACGGCGGTAATTATCATCAACGATTCGGCCGC
GCGCAGCAGCCCGCTCAGCACTCTTCTCAAGAACGTTCAAGGCAAGACAA
CGGCGGCGGCAAAGGCCCCCGTTGCTATGAATGTAATGAGATGGGGCATA
TCAAGCGTAATTGCCCGAAGCGCGGCGCTGGAGGAGCAACAAGATCTTCA
GCACGCGCGAATCAAGCGACTGAACAGCCTCTGCATATGCATCGAGTGCT
GGTAGCAGAGAGAGGTCCGTGCAGGCCGTCCTGGTTGCCAGGGGCGGGCT
GTAACCGCTCGTCTGCGCGAAAGAAGGGCCTTTGGCAGGGCCGGGGTGAA
AATCACGTCAACTTCATTGTCGACAGCGGGGCGGCGCACACCATGGTGAA
CGACATCGGACTGCTCACTAATCTTAAAGTGTGCTCGCATGATATTCGCG
GCGTCGGCGACACACAGTTCTTTGCAAAGCTCTCAGGCGACTTCAGCGGT
AACATCTTTACCTCTGACGGGAGGCGCCTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7276:1484..2466-

>mRNA_P-wetherbeei_contig7276.2.1 ID=mRNA_P-wetherbeei_contig7276.2.1|Name=mRNA_P-wetherbeei_contig7276.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=960bp|location=Sequence derived from alignment at P-wetherbeei_contig7276:1484..2466- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGCAGCTGTCGCATCAGGGGATCGGGAACTCCGAAGACCCTGA
AATGTATTTTGCTGGTATTGAAGACATGCGGGCGGAACTGGCGGATGCCG
GTGATCCCGTATCGGACGAAGCGCTCAAAAGGCTAATCGTTTCGAATCTT
TCCGGCAAGTACGAGATTGTGCAGCAAACTCTTCTCTTGGGCATGACGCC
ATACACACTGGCGGAGCTCAAAGACAAGATCCGTGCGTGCCATCAAGCAT
CGCTTCTCAAGAAGCACGCTGTCGATGCTTCTGTGAACTACAGCGGCTAC
AGCGGCGGCGGCGGAGGAAGCGGTAGAAATAACAGCGGCCGGCGCCAGGG
CCGCCCGAACCGCTGGTTTACCGGCGGGAGGGGCGGCGGTGACAGCGGTG
ACGGCGGTAATAGCCGTGGCGGTCAGCAAGACCGTGGCCAGCGGGACGGC
GGTAATTATCATCAACGATTCGGCCGCGCGCAGCAGCCCGCTCAGCACTC
TTCTCAAGAACGTTCAAGGCAAGACAACGGCGGCGGCAAAGGCCCCCGTT
GCTATGAATGTAATGAGATGGGGCATATCAAGCGTAATTGCCCGAAGCGC
GGCGCTGGAGGAGCAACAAGATCTTCAGCACGCGCGAATCAAGCGACTGA
ACAGCCTCTGCATATGCATCGAGTGCTGGTAGCAGAGAGAGGTCCGTGCA
GGCCGTCCTGGTTGCCAGGGGCGGGCTGTAACCGCTCGTCTGCGCGAAAG
AAGGGCCTTTGGCAGGGCCGGGGTGAAAATCACGTCAACTTCATTGTCGA
CAGCGGGGCGGCGCACACCATGGTGAACGACATCGGACTGCTCACTAATC
TTAAAGTGTGCTCGCATGATATTCGCGGCGTCGGCGACACACAGTTCTTT
GCAAAGCTCTCAGGCGACTTCAGCGGTAACATCTTTACCTCTGACGGGAG
GCGCCTCAAG
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