mRNA_P-wetherbeei_contig7275.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7275.2.1
Unique NamemRNA_P-wetherbeei_contig7275.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7275.2.1 vs. uniprot
Match: A0A836CIS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.430e-25
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 PARRTGPPGVSSGVSLRQMRPVNTEEIRRICQHYEEKCGGQYASDSPAARYVFEMAREVRSQLGALDAADDQRAQRLASLAATM 252
            P+ R GPPGVSSGVSLR +     + +  ICQHYEEKC G+YASDS AARYVF+++REV+SQL AL+A    R  R+ASL++T+
Sbjct:   43 PSHRVGPPGVSSGVSLRHLPDTTFKAVAAICQHYEEKCSGKYASDSAAARYVFDLSREVQSQLAALEAQAQDREARVASLSSTL 126
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BLAST of mRNA_P-wetherbeei_contig7275.2.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.470e-20
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:   10 RTGPPGVSSGVSLRQMRPVNTEEIRRICQHYEEKCGGQYASDSPAARYVFEMAREVRSQLGALDAADDQRAQRLASLAAT--MEEWEASF 273
            R GP GVSSGVSLR + P   E++ +ICQHYEEKC G YASDS AARY+F+++REV+    AL+   D+ +Q L +L A   +EEW  SF
Sbjct:   61 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALE--QDRSSQTLGNLQAEQLLEEWNESF 148
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BLAST of mRNA_P-wetherbeei_contig7275.2.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 6.960e-20
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 PARRTGPPGVSSGVSLRQMRPVNTEEIRRICQHYEEKCGGQYASDSPAARYVFEMAREVRSQLGALDAADDQRAQRLASLAAT--MEEWEASF 273
            P  R GP GVSSGVSLR + P   E++ +ICQHYEEKC G YASDS AARY+F+++REV+    AL+   ++ +Q L +L A   ++EW  SF
Sbjct:    9 PQHRIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALE--QERSSQTLGNLQAEQLLKEWNESF 99
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BLAST of mRNA_P-wetherbeei_contig7275.2.1 vs. uniprot
Match: A0A7S2PFX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PFX9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.850e-12
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    1 PARRTGPPGVSSGVSLRQMRPVNTEEIRRICQHYEEKCGGQYASDSPAARYVFEMAREVRSQLGALDAADDQRAQRLASLAATMEEWEASF 273
            P  R GP GVSSGVS R++   + + I  IC HYE KC G+Y  ++ A+RY+F+M REV SQ+ AL  A  +  +    L   + EW   F
Sbjct:   44 PRHRVGPKGVSSGVSFRKLPDTSLQAIINICSHYEAKCSGKY--ETLASRYLFQMGREVLSQVYALAEAAKEDEKVFQELEGAVHEWNEHF 132
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BLAST of mRNA_P-wetherbeei_contig7275.2.1 vs. uniprot
Match: A0A2R5GHD7_9STRA (Protein kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHD7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.330e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:   37 GVSLRQMRPVNTEEIRRICQHYEEKCGGQYASDSPAARYVFEMAREVRSQLGALDAADDQRAQRLASLAATMEEWEASF 273
            G+SLR  R  + E +R  C  YEEKC G+Y   S AARY+FE+AREV+ Q   L+    Q+  R   L A M EW+ +F
Sbjct:  758 GMSLRARRRASPETLRETCWFYEEKCAGKYDCKSLAARYLFELAREVQEQADDLERLHAQQEDRTNYLEACMREWDETF 836
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7275.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CIS0_9STRA5.430e-2559.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FTA0_ECTSI2.470e-2054.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMF9_9PHAE6.960e-2051.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PFX9_9STRA1.850e-1242.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2R5GHD7_9STRA2.330e-1145.57Protein kinase n=1 Tax=Hondaea fermentalgiana TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7275contigP-wetherbeei_contig7275:597..1220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTA0
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.05e-21
EggNOG OGs2BZB3@1|root,2SGA8@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003820.1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.4900455-CDS-P-wetherbeei_contig7275:596..7201683186969.4900455-CDS-P-wetherbeei_contig7275:596..720Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7275 597..720 -
1683186969.5016415-CDS-P-wetherbeei_contig7275:1071..12201683186969.5016415-CDS-P-wetherbeei_contig7275:1071..1220Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7275 1072..1220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7275.2.1prot_P-wetherbeei_contig7275.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7275 597..1220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7275.2.1

>prot_P-wetherbeei_contig7275.2.1 ID=prot_P-wetherbeei_contig7275.2.1|Name=mRNA_P-wetherbeei_contig7275.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
PARRTGPPGVSSGVSLRQMRPVNTEEIRRICQHYEEKCGGQYASDSPAAR
YVFEMAREVRSQLGALDAADDQRAQRLASLAATMEEWEASF
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mRNA from alignment at P-wetherbeei_contig7275:597..1220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7275.2.1 ID=mRNA_P-wetherbeei_contig7275.2.1|Name=mRNA_P-wetherbeei_contig7275.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=624bp|location=Sequence derived from alignment at P-wetherbeei_contig7275:597..1220- (Phaeothamnion wetherbeei SAG_119_79)
CCCGCTCGCAGGACGGGCCCGCCCGGCGTGAGCTCTGGCGTGTCGCTGCG
GCAGATGCGGCCGGTGAACACTGAGGAGATCCGACGCATTTGTCAGCACT
ACGAGGAGAAGTGCGGCGGCCAGTACGCCAGCGACTCCCCGGCGGCCAGG
TGCTGTCGGTTGGGGTAGCCACAGCTTACGGCGGTTGCAGTTTGGGTCCG
TTTGTCGCGGCTTTCATCCGTCCCCTCTGCGAGATGCTGGAGGGGAACGC
GTGATGCGGCGCGCGCAGAATCAGACCAGGAATGCTTGTCCTTCCGTTCC
GTCGATGCTTCTCGCAGTCGTCTTCGCTTTCCACGTTCGTTAGCCTGCCC
CTGACTATTTGGCCGTGCTACCCAACCAGCAAAATCAACTGCCCGCCCCG
CTCGCGTTGGTTGTTTCTTTGGGCCCTAGCTAGGTCTGTCTTCTCATCCT
TCCCCCCTTTTCCTTCGTTTTCCCTTTTTCCTGCCTCGCTCTGCCGGCAG
GTACGTGTTTGAAATGGCGCGGGAGGTGCGGTCACAACTCGGCGCGCTCG
ATGCGGCGGACGACCAGCGCGCACAGCGGCTGGCGTCACTGGCGGCGACG
ATGGAGGAATGGGAGGCGAGCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7275:597..1220-

>mRNA_P-wetherbeei_contig7275.2.1 ID=mRNA_P-wetherbeei_contig7275.2.1|Name=mRNA_P-wetherbeei_contig7275.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig7275:597..1220- (Phaeothamnion wetherbeei SAG_119_79)
CCCGCTCGCAGGACGGGCCCGCCCGGCGTGAGCTCTGGCGTGTCGCTGCG
GCAGATGCGGCCGGTGAACACTGAGGAGATCCGACGCATTTGTCAGCACT
ACGAGGAGAAGTGCGGCGGCCAGTACGCCAGCGACTCCCCGGCGGCCAGG
TACGTGTTTGAAATGGCGCGGGAGGTGCGGTCACAACTCGGCGCGCTCGA
TGCGGCGGACGACCAGCGCGCACAGCGGCTGGCGTCACTGGCGGCGACGA
TGGAGGAATGGGAGGCGAGCTTC
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