mRNA_P-wetherbeei_contig7264.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7264.1.1
Unique NamemRNA_P-wetherbeei_contig7264.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7264.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7264contigP-wetherbeei_contig7264:218..1709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1492
Hectar predicted targeting categoryother localisation
Exons1
Cds size1317
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.0012286-UTR-P-wetherbeei_contig7264:217..2411683186969.0012286-UTR-P-wetherbeei_contig7264:217..241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7264 218..241 -
1683186969.0272477-UTR-P-wetherbeei_contig7264:1558..17091683186969.0272477-UTR-P-wetherbeei_contig7264:1558..1709Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7264 1559..1709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186969.0141828-CDS-P-wetherbeei_contig7264:241..15581683186969.0141828-CDS-P-wetherbeei_contig7264:241..1558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7264 242..1558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7264.1.1prot_P-wetherbeei_contig7264.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7264 242..1558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7264.1.1

>prot_P-wetherbeei_contig7264.1.1 ID=prot_P-wetherbeei_contig7264.1.1|Name=mRNA_P-wetherbeei_contig7264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=439bp
MVAAAPSRDRSRSRKESAVAPASKPRVSSSAKAASPRTGRSSPRFTGEAP
PKAKPAAAGGASGDANEPPAVANEAQAAAAVALAAVAAEPAVVAEPPASV
AATTGAAAAGALNAAHHVAEPPPTPVRSHTVAPILADDEAAPVSMAEPVV
VSGDAGGGGRSGGGDGSSSASGAVPWSTAGVGAAAPVREMPSPPAAAAAT
LEETDAAQASTVGGVSPPAADGERAAAAACAGAGPDGGATPGMAEGPVAP
PAAAAPPAADTVDAAPEASVPAGAAAAAAAAAATVLPAGAPEAEAPLTGL
KREAKDSLGDWNSDSGAAAAAAAGEGTGDGAEAAGQRPPTPKRARTSAPE
VVDAPPQDGRATAAAAGSVGTVDGSPTLSPAGVGQPTGAAPPAKGVSSEP
GGSSAPTGGAASAVAPDAVRSRSDGTAAPLREAVRGRS*
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mRNA from alignment at P-wetherbeei_contig7264:218..1709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7264.1.1 ID=mRNA_P-wetherbeei_contig7264.1.1|Name=mRNA_P-wetherbeei_contig7264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1492bp|location=Sequence derived from alignment at P-wetherbeei_contig7264:218..1709- (Phaeothamnion wetherbeei SAG_119_79)
TTCTGCAGCCGCTAGGACCGTTAAAGGAGGCAATGGCGACTGGGCCCGGA
AAGAAAGCGGCACGGCTGGAGCTGGCGGTGGCAGCAGCGGCGGTGGCGGA
GGAGAGAGGAAGGCCGCCAAGAGTCTGGAGTCACGCAATGCTGTCACTGA
CATGGTGGCGGCGGCGCCATCTCGGGACCGCTCCCGCTCCCGCAAGGAGA
GTGCCGTCGCTCCTGCCAGCAAGCCGCGCGTGTCGTCTTCAGCCAAGGCT
GCGTCGCCGCGGACTGGCCGTTCGTCCCCTCGCTTCACGGGTGAGGCGCC
ACCAAAGGCGAAACCTGCTGCTGCAGGTGGCGCTTCGGGCGACGCTAACG
AACCGCCCGCGGTTGCTAATGAGGCGCAGGCGGCGGCGGCGGTGGCGTTG
GCGGCGGTAGCGGCAGAGCCTGCGGTTGTGGCGGAGCCACCGGCCTCGGT
GGCAGCGACGACTGGCGCAGCGGCAGCAGGGGCGCTGAACGCCGCACACC
ACGTCGCTGAGCCCCCGCCAACGCCGGTGCGCTCGCACACGGTGGCGCCG
ATCCTTGCTGACGACGAAGCCGCGCCTGTTTCGATGGCGGAACCTGTGGT
CGTGTCGGGGGATGCCGGTGGCGGCGGCCGTAGCGGTGGCGGCGATGGAA
GCAGCAGCGCATCGGGTGCAGTGCCGTGGTCAACTGCCGGAGTGGGGGCG
GCCGCCCCAGTCAGGGAGATGCCATCGCCGCCGGCAGCGGCGGCCGCAAC
CCTGGAAGAGACGGATGCAGCACAAGCATCGACCGTCGGCGGGGTCTCAC
CGCCGGCTGCAGACGGTGAGCGTGCCGCAGCTGCTGCCTGCGCTGGCGCC
GGCCCTGACGGCGGCGCGACGCCCGGCATGGCTGAGGGCCCGGTGGCACC
ACCGGCTGCGGCAGCACCCCCGGCAGCAGATACGGTGGATGCGGCGCCTG
AGGCGTCGGTTCCAGCGGGGGCAGCAGCGGCAGCGGCTGCGGCGGCAGCC
ACAGTCCTGCCGGCAGGCGCGCCGGAGGCCGAAGCGCCGCTCACGGGATT
GAAGCGAGAGGCGAAGGATTCGCTTGGCGACTGGAACAGCGATAGCGGCG
CCGCTGCTGCAGCGGCCGCCGGTGAGGGCACCGGGGATGGCGCCGAGGCG
GCCGGCCAGAGGCCGCCAACGCCGAAACGCGCGCGAACCAGCGCTCCAGA
GGTGGTCGATGCGCCGCCGCAGGACGGCAGAGCTACCGCTGCCGCCGCCG
GATCCGTCGGAACCGTCGATGGATCGCCCACCCTTTCGCCGGCCGGAGTC
GGCCAACCGACGGGTGCGGCTCCTCCTGCGAAAGGCGTTTCTTCGGAGCC
TGGTGGCAGTAGCGCGCCAACAGGAGGCGCCGCTTCCGCAGTCGCCCCCG
ACGCCGTTAGGAGCCGAAGCGATGGTACCGCCGCTCCCCTGCGCGAGGCG
GTACGGGGGCGTTCGTAGGATGGCGGCGATGTGGACAGTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7264:218..1709-

>mRNA_P-wetherbeei_contig7264.1.1 ID=mRNA_P-wetherbeei_contig7264.1.1|Name=mRNA_P-wetherbeei_contig7264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1317bp|location=Sequence derived from alignment at P-wetherbeei_contig7264:218..1709- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGGCGGCGCCATCTCGGGACCGCTCCCGCTCCCGCAAGGAGAG
TGCCGTCGCTCCTGCCAGCAAGCCGCGCGTGTCGTCTTCAGCCAAGGCTG
CGTCGCCGCGGACTGGCCGTTCGTCCCCTCGCTTCACGGGTGAGGCGCCA
CCAAAGGCGAAACCTGCTGCTGCAGGTGGCGCTTCGGGCGACGCTAACGA
ACCGCCCGCGGTTGCTAATGAGGCGCAGGCGGCGGCGGCGGTGGCGTTGG
CGGCGGTAGCGGCAGAGCCTGCGGTTGTGGCGGAGCCACCGGCCTCGGTG
GCAGCGACGACTGGCGCAGCGGCAGCAGGGGCGCTGAACGCCGCACACCA
CGTCGCTGAGCCCCCGCCAACGCCGGTGCGCTCGCACACGGTGGCGCCGA
TCCTTGCTGACGACGAAGCCGCGCCTGTTTCGATGGCGGAACCTGTGGTC
GTGTCGGGGGATGCCGGTGGCGGCGGCCGTAGCGGTGGCGGCGATGGAAG
CAGCAGCGCATCGGGTGCAGTGCCGTGGTCAACTGCCGGAGTGGGGGCGG
CCGCCCCAGTCAGGGAGATGCCATCGCCGCCGGCAGCGGCGGCCGCAACC
CTGGAAGAGACGGATGCAGCACAAGCATCGACCGTCGGCGGGGTCTCACC
GCCGGCTGCAGACGGTGAGCGTGCCGCAGCTGCTGCCTGCGCTGGCGCCG
GCCCTGACGGCGGCGCGACGCCCGGCATGGCTGAGGGCCCGGTGGCACCA
CCGGCTGCGGCAGCACCCCCGGCAGCAGATACGGTGGATGCGGCGCCTGA
GGCGTCGGTTCCAGCGGGGGCAGCAGCGGCAGCGGCTGCGGCGGCAGCCA
CAGTCCTGCCGGCAGGCGCGCCGGAGGCCGAAGCGCCGCTCACGGGATTG
AAGCGAGAGGCGAAGGATTCGCTTGGCGACTGGAACAGCGATAGCGGCGC
CGCTGCTGCAGCGGCCGCCGGTGAGGGCACCGGGGATGGCGCCGAGGCGG
CCGGCCAGAGGCCGCCAACGCCGAAACGCGCGCGAACCAGCGCTCCAGAG
GTGGTCGATGCGCCGCCGCAGGACGGCAGAGCTACCGCTGCCGCCGCCGG
ATCCGTCGGAACCGTCGATGGATCGCCCACCCTTTCGCCGGCCGGAGTCG
GCCAACCGACGGGTGCGGCTCCTCCTGCGAAAGGCGTTTCTTCGGAGCCT
GGTGGCAGTAGCGCGCCAACAGGAGGCGCCGCTTCCGCAGTCGCCCCCGA
CGCCGTTAGGAGCCGAAGCGATGGTACCGCCGCTCCCCTGCGCGAGGCGG
TACGGGGGCGTTCGTAG
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