mRNA_P-wetherbeei_contig7250.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7250.2.1
Unique NamemRNA_P-wetherbeei_contig7250.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7250.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7250contigP-wetherbeei_contig7250:956..2889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1405
Hectar predicted targeting categorymitochondrion
Exons3
Cds size1341
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186968.1492524-UTR-P-wetherbeei_contig7250:955..10101683186968.1492524-UTR-P-wetherbeei_contig7250:955..1010Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7250 956..1010 +
1683186968.1905484-UTR-P-wetherbeei_contig7250:2880..28891683186968.1905484-UTR-P-wetherbeei_contig7250:2880..2889Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7250 2881..2889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186968.1596475-CDS-P-wetherbeei_contig7250:1010..16371683186968.1596475-CDS-P-wetherbeei_contig7250:1010..1637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7250 1011..1637 +
1683186968.1717844-CDS-P-wetherbeei_contig7250:1901..25321683186968.1717844-CDS-P-wetherbeei_contig7250:1901..2532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7250 1902..2532 +
1683186968.1807156-CDS-P-wetherbeei_contig7250:2797..28801683186968.1807156-CDS-P-wetherbeei_contig7250:2797..2880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7250 2798..2880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7250.2.1prot_P-wetherbeei_contig7250.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7250 1011..2880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7250.2.1

>prot_P-wetherbeei_contig7250.2.1 ID=prot_P-wetherbeei_contig7250.2.1|Name=mRNA_P-wetherbeei_contig7250.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=447bp
MPRGPAAFRNSLPLRSAAAMVAGAAAAELTAATGRRTHSRTGSLPITLTQ
LYLSGGSGGGSSDGALSEGASPVAHGASSMTRPAAWGLSRLHIISPSGEP
SFPGGSDGSADGNRPLSTSSAPGYASGPMLGCSPAADRGGGGGSSVGTGG
TGTGGGCSGGDGVWYMGEDANAVLLRRLTPSHSFDIGKSRTPRSRGAALE
RFQHSLVKEMADSHGSLSPDTIQLLVDNRAAPLPAAISDATEITIEVESS
PLSAMGSAHSVESADSNMGGGGGGGFGRGRGFSLGFRHSTPGGGAGGGGG
GGGGSTSYTARNASRAYGGGSYGGAAYGGVLYDDDGSGSKGGGGGGGRSS
GNGGGGGGKRSSAGRGEDEQGTTTIHLTGSDPNLLSRFASGGSLSASRSS
SRSSINSNGSESSLLGHAGTWLASTTSCWCPQCSHATIRATSASAP*
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mRNA from alignment at P-wetherbeei_contig7250:956..2889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7250.2.1 ID=mRNA_P-wetherbeei_contig7250.2.1|Name=mRNA_P-wetherbeei_contig7250.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1934bp|location=Sequence derived from alignment at P-wetherbeei_contig7250:956..2889+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCCTTCTTCGTTCTTCCCGTCACGCCGACGGCGGTCGAAAACATCG
AATCGATGCCCCGCGGCCCGGCGGCATTCCGCAACAGCCTGCCGCTGCGC
TCCGCGGCGGCGATGGTGGCCGGGGCGGCAGCAGCCGAGCTGACGGCGGC
GACAGGGAGGCGCACACACTCGCGCACCGGCAGCCTGCCCATCACGCTGA
CGCAGCTTTACCTGTCAGGTGGCAGCGGCGGTGGCAGCAGCGACGGCGCC
CTTTCGGAGGGCGCCTCACCGGTCGCGCACGGCGCATCGTCTATGACACG
GCCCGCCGCCTGGGGGCTCTCGCGTCTCCATATCATCAGCCCCTCGGGAG
AGCCTTCTTTTCCCGGCGGAAGCGACGGCAGTGCTGACGGGAACCGGCCG
CTCTCGACCAGTTCGGCGCCGGGCTACGCCTCGGGACCGATGCTCGGCTG
TAGCCCCGCCGCCGACAGGGGCGGCGGCGGCGGCAGCAGCGTCGGAACCG
GCGGAACCGGCACTGGCGGTGGCTGCAGCGGCGGTGACGGCGTGTGGTAC
ATGGGCGAAGATGCCAACGCAGTGCTGCTGCGGCGGCTGACGCCGTCGCA
TTCCTTCGACATCGGCAAGTCGCGGACGCCGCGCAGCCGGGGGGCCGCCC
TGGAGCGCTTCCAGCACTCGCTCGTCAAGGAGGTGAGAGACAGTGGCAGC
CAACTTTGTCAACACTGGCATCTGTTTCGAATCAACTCGTTTTTGTTTTG
CTCATAATTGGCATCGCTACGGTGAAGCGAAGCGCAACGACAGGGAGCCT
TCCGCGCATCTAGGTCCTGCCTGGCTTCTGACTATTCACGCCCTTTGTGC
TTTCGTCTGTTCATTCCTCCGTCCGTCCACCGACCCGCCGAATCTATTCG
CGCCGCTCTCGCTACTCCGCCCCGCACTGAAATTGAGGGAGTGTAGATGG
CTGACTCGCACGGCTCTTTGAGTCCGGACACGATCCAATTGCTGGTAGAC
AACCGGGCAGCGCCGCTGCCGGCCGCCATCAGCGACGCCACCGAGATCAC
CATCGAGGTCGAGTCGTCGCCGCTGTCGGCTATGGGCAGTGCGCACTCCG
TTGAGTCCGCCGACAGCAACATGGGCGGAGGTGGCGGCGGCGGCTTCGGG
CGGGGCCGCGGCTTCTCGCTGGGGTTCCGCCACAGCACGCCCGGGGGCGG
CGCGGGCGGCGGTGGCGGCGGCGGCGGCGGCAGCACGTCGTATACGGCAC
GGAACGCCTCGCGGGCCTACGGAGGAGGCAGCTATGGCGGTGCTGCGTAC
GGCGGGGTTTTGTACGACGATGATGGCAGCGGGAGCAAGGGCGGCGGCGG
CGGGGGCGGCCGCAGCAGCGGCAACGGCGGCGGCGGCGGCGGCAAGCGCA
GCAGTGCCGGACGCGGCGAGGACGAGCAGGGGACCACCACTATCCACCTG
ACAGGCTCCGACCCCAACCTCCTCAGCAGATTCGCCTCCGGCGGCTCCCT
GAGCGCGAGCCGGTCCAGCTCGAGGTCCTCTATCAACAGCAACGGCTCGG
AAAGCTCGCTGCTGGGTCATGCGGGCAGCAGCGCCGCCGGCAGCGCCACC
GGCAGTGCCGCCGTCAGCGGCGCCGGCGCTGGAGCCGCGGGCAGCGGCAG
CGGCAGCGCGGGCCCCGCGAGCGGTCGCAGCAGCAGCATCAGCGGCGTCA
GCAATCTGACTGGTGCCGGCGGCGTCGGCAGCGGCGGCGGCGGCGGCGGT
GGCGCGCGCGGGTCGTGGCACCTGGGATCCCGCTCGGGAAGCTTTGGGCG
AGAGGAAGTGGGGGAGGAAGAGGCGGACCACCGGCGGCGCAGCATGGCTC
GCAAGCACGACTTCTTGTTGGTGCCCACAATGCTCACACGCGACCATCAG
GGCAACATCAGCAAGCGCGCCGTAATGTTTCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7250:956..2889+

>mRNA_P-wetherbeei_contig7250.2.1 ID=mRNA_P-wetherbeei_contig7250.2.1|Name=mRNA_P-wetherbeei_contig7250.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1341bp|location=Sequence derived from alignment at P-wetherbeei_contig7250:956..2889+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCGCGGCCCGGCGGCATTCCGCAACAGCCTGCCGCTGCGCTCCGC
GGCGGCGATGGTGGCCGGGGCGGCAGCAGCCGAGCTGACGGCGGCGACAG
GGAGGCGCACACACTCGCGCACCGGCAGCCTGCCCATCACGCTGACGCAG
CTTTACCTGTCAGGTGGCAGCGGCGGTGGCAGCAGCGACGGCGCCCTTTC
GGAGGGCGCCTCACCGGTCGCGCACGGCGCATCGTCTATGACACGGCCCG
CCGCCTGGGGGCTCTCGCGTCTCCATATCATCAGCCCCTCGGGAGAGCCT
TCTTTTCCCGGCGGAAGCGACGGCAGTGCTGACGGGAACCGGCCGCTCTC
GACCAGTTCGGCGCCGGGCTACGCCTCGGGACCGATGCTCGGCTGTAGCC
CCGCCGCCGACAGGGGCGGCGGCGGCGGCAGCAGCGTCGGAACCGGCGGA
ACCGGCACTGGCGGTGGCTGCAGCGGCGGTGACGGCGTGTGGTACATGGG
CGAAGATGCCAACGCAGTGCTGCTGCGGCGGCTGACGCCGTCGCATTCCT
TCGACATCGGCAAGTCGCGGACGCCGCGCAGCCGGGGGGCCGCCCTGGAG
CGCTTCCAGCACTCGCTCGTCAAGGAGATGGCTGACTCGCACGGCTCTTT
GAGTCCGGACACGATCCAATTGCTGGTAGACAACCGGGCAGCGCCGCTGC
CGGCCGCCATCAGCGACGCCACCGAGATCACCATCGAGGTCGAGTCGTCG
CCGCTGTCGGCTATGGGCAGTGCGCACTCCGTTGAGTCCGCCGACAGCAA
CATGGGCGGAGGTGGCGGCGGCGGCTTCGGGCGGGGCCGCGGCTTCTCGC
TGGGGTTCCGCCACAGCACGCCCGGGGGCGGCGCGGGCGGCGGTGGCGGC
GGCGGCGGCGGCAGCACGTCGTATACGGCACGGAACGCCTCGCGGGCCTA
CGGAGGAGGCAGCTATGGCGGTGCTGCGTACGGCGGGGTTTTGTACGACG
ATGATGGCAGCGGGAGCAAGGGCGGCGGCGGCGGGGGCGGCCGCAGCAGC
GGCAACGGCGGCGGCGGCGGCGGCAAGCGCAGCAGTGCCGGACGCGGCGA
GGACGAGCAGGGGACCACCACTATCCACCTGACAGGCTCCGACCCCAACC
TCCTCAGCAGATTCGCCTCCGGCGGCTCCCTGAGCGCGAGCCGGTCCAGC
TCGAGGTCCTCTATCAACAGCAACGGCTCGGAAAGCTCGCTGCTGGGTCA
TGCGGGCACATGGCTCGCAAGCACGACTTCTTGTTGGTGCCCACAATGCT
CACACGCGACCATCAGGGCAACATCAGCAAGCGCGCCGTAA
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