mRNA_P-wetherbeei_contig7248.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7248.2.1
Unique NamemRNA_P-wetherbeei_contig7248.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7248.2.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.220e-10
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  769 YLDQGLEVESDTFSLLAFWRDNGSNKIDIASGAVLAKPEFPRLAKLAALYMEMDATSCEVERNFLAFANVPEDMRASMRPLTVEICTLLHLNR 1047
            YL +  +++ D F++L +W   G++ +   +G V +  E P LA +A LY+ ++ATSC+ ERNF A A++   +R +M P  VE    + LNR
Sbjct:  516 YLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNR 608
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BLAST of mRNA_P-wetherbeei_contig7248.2.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.660e-10
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  769 YLDQGLEVESDTFSLLAFWRDNGSNKIDIASGAVLAKPEFPRLAKLAALYMEMDATSCEVERNFLAFANVPEDMRASMRPLTVEICTLLHLNR 1047
            YL +  +++ D F++L +W   G++ +   +G V +  E P LA +A LY+ ++ATSC+ ERNF A A++   +R +M P  VE    + LNR
Sbjct:  711 YLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNR 803
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BLAST of mRNA_P-wetherbeei_contig7248.2.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.580e-9
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  769 YLDQGLEVESDTFSLLAFWRDNGSNKIDIASGAVLAKPEFPRLAKLAALYMEMDATSCEVERNFLAFANVPEDMRASMRPLTVEICTLLHLNR 1047
            YL +  +VE D F++L FW   G++ +   +G V +  E P LA +A L++ ++A+SC+ ERNF A +++   +R +M    VE   L+ LNR
Sbjct:  134 YLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNR 226
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BLAST of mRNA_P-wetherbeei_contig7248.2.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.490e-8
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  769 YLDQGLEVESDTFSLLAFWRDNGSNKIDIASGAVLAKPEFPRLAKLAALYMEMDATSCEVERNFLAFANVPEDMRASMRPLTVEICTLLHLNR 1047
            YL +  +VE D F++L FW   G++ +   +G V +  E P LA +A L++ ++A+SC+ ERNF A +++   +R +M    VE   L+ LNR
Sbjct:  699 YLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNR 791
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BLAST of mRNA_P-wetherbeei_contig7248.2.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.340e-6
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  790 VESDTFSLLAFWRDNGSNKIDIASGAVLAKPEFPRLAKLAALYMEMDATSCEVERNFLAFANVPEDMRASMRPLTVEICTLLHLN 1044
            V +  + +L FWRD GS ++D   G V++  +FP L+ LA +Y+ +D+TSC+ ER F     V  ++R +M P  VE+   L  N
Sbjct:  170 VPAKDYDVLGFWRDAGSPRLD-PHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSN 253
[Close]
BLAST of mRNA_P-wetherbeei_contig7248.2.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.790e-6
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  790 VESDTFSLLAFWRDNGSNKIDIASGAVLAKPEFPRLAKLAALYMEMDATSCEVERNFLAFANVPEDMRASMRPLTVEICTLLHLN 1044
            V +  + +L FWRD GS ++D   G V++  +FP L+ LA +Y+ +D+TSC+ ER F     V  ++R +M P  VE+   L  N
Sbjct:  172 VPAKDYDVLGFWRDAGSPRLD-PHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSN 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7248.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE3.220e-1036.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE3.660e-1036.56Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE3.580e-936.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.490e-836.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L256_9PHAE1.340e-637.65Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6H5L902_9PHAE1.790e-637.65Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7248contigP-wetherbeei_contig7248:1417..2566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4565.Traes_2AL_F5BCAC94C.2
PFAMsDUF4413,Dimer_Tnp_hAT
Model size1150
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000711
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,37KEM@33090|Viridiplantae,3GEIY@35493|Streptophyta,3KTE8@4447|Liliopsida
DescriptionRNA polymerase II regulatory region DNA binding
Cds size480
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.941706-UTR-P-wetherbeei_contig7248:1416..15041683186967.941706-UTR-P-wetherbeei_contig7248:1416..1504Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7248 1417..1504 -
1683186967.9596722-UTR-P-wetherbeei_contig7248:1984..25661683186967.9596722-UTR-P-wetherbeei_contig7248:1984..2566Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7248 1985..2566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.951268-CDS-P-wetherbeei_contig7248:1504..19841683186967.951268-CDS-P-wetherbeei_contig7248:1504..1984Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7248 1505..1984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7248.2.1prot_P-wetherbeei_contig7248.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7248 1505..1984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7248.2.1

>prot_P-wetherbeei_contig7248.2.1 ID=prot_P-wetherbeei_contig7248.2.1|Name=mRNA_P-wetherbeei_contig7248.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MRELKTLARAPCAPSDKKGAAGWPSEAPAAVAGWGSGGAEHGRPPRAGYR
RRLRHRLRCERAYLDQGLEVESDTFSLLAFWRDNGSNKIDIASGAVLAKP
EFPRLAKLAALYMEMDATSCEVERNFLAFANVPEDMRASMRPLTVEICTL
LHLNRTCFH*
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mRNA from alignment at P-wetherbeei_contig7248:1417..2566-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7248.2.1 ID=mRNA_P-wetherbeei_contig7248.2.1|Name=mRNA_P-wetherbeei_contig7248.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1150bp|location=Sequence derived from alignment at P-wetherbeei_contig7248:1417..2566- (Phaeothamnion wetherbeei SAG_119_79)
GAATGATTGGCGCGTACCGGTAACGGTATCCATCCAAAAAGTGCGCTGGA
TACACCAGTACATGGTGTTCCTGTGGGAAAATCCCCAGGTGAGCCGAGAA
CCCGGAGACACACGCTTTGTTCCTCGTAAAACAGAGTTCACAATTCACCC
CAAACATGGTGATATGCAATACTGCGGGTCGCAAGCAACCAAACCTTCCC
ACGCAGTACCATTTCAATCGAGAAGGGTGCGGAAAACTAGTCCACGCACT
GTGCTGTGACGAGCTTCTTGGGCCTAGAAGGAAGGTATCAGTGCTCCGAG
GATGACCAGCCACGTCCCACCGCACTGTAGCTGCGGCTGCACGGCGTAGG
GATGCCGTCTTCGTCGTCTTCGTCGCCTTCCCTTTCTGCTCCGTTGTCTT
CTTTGGCGCCGCTTTCCAATGCGGAGCTGGAGATCCAGCCACCGGAGGGG
CCGTCCAAACGATGCTGATCCACAAGATGGAACGGAAGGTGCTTCCGCCG
CCGGTGGCTGGGAGAGGCAACCAGAGCTCTTCCCCAATCTTCCAGTCCAT
CGTGCTATTCGAGCCGGCGCTGACTCACAAGGATGAGGGAACTCAAAACA
TTGGCAAGAGCGCCATGTGCACCATCAGACAAGAAGGGAGCCGCTGGTTG
GCCGTCGGAAGCACCGGCAGCAGTAGCGGGTTGGGGCAGCGGCGGCGCGG
AGCACGGCCGGCCGCCTCGAGCGGGGTATCGACGGCGTCTACGACACCGT
CTGAGGTGCGAACGAGCCTATCTAGACCAGGGGTTGGAGGTAGAGTCGGA
CACGTTTTCGCTTTTGGCATTTTGGAGGGATAACGGCAGCAACAAGATTG
ACATAGCGAGCGGCGCTGTCCTCGCCAAGCCGGAGTTTCCGCGGCTCGCC
AAGCTGGCGGCGCTGTACATGGAAATGGATGCAACCAGCTGCGAGGTGGA
ACGGAACTTTTTGGCGTTTGCAAATGTGCCGGAAGACATGCGAGCATCCA
TGCGGCCGCTGACGGTGGAGATATGCACGCTGTTGCACCTAAACCGCACT
TGCTTCCATTAAAGGGATCAATCAGCTTTTGAAGCTGGCGGATGAACGCA
AGGCGAAGGCGGCGAAGATGGCGGTACTCGTGGCGACGGCTCGGGCTTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7248:1417..2566-

>mRNA_P-wetherbeei_contig7248.2.1 ID=mRNA_P-wetherbeei_contig7248.2.1|Name=mRNA_P-wetherbeei_contig7248.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig7248:1417..2566- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGAACTCAAAACATTGGCAAGAGCGCCATGTGCACCATCAGACAA
GAAGGGAGCCGCTGGTTGGCCGTCGGAAGCACCGGCAGCAGTAGCGGGTT
GGGGCAGCGGCGGCGCGGAGCACGGCCGGCCGCCTCGAGCGGGGTATCGA
CGGCGTCTACGACACCGTCTGAGGTGCGAACGAGCCTATCTAGACCAGGG
GTTGGAGGTAGAGTCGGACACGTTTTCGCTTTTGGCATTTTGGAGGGATA
ACGGCAGCAACAAGATTGACATAGCGAGCGGCGCTGTCCTCGCCAAGCCG
GAGTTTCCGCGGCTCGCCAAGCTGGCGGCGCTGTACATGGAAATGGATGC
AACCAGCTGCGAGGTGGAACGGAACTTTTTGGCGTTTGCAAATGTGCCGG
AAGACATGCGAGCATCCATGCGGCCGCTGACGGTGGAGATATGCACGCTG
TTGCACCTAAACCGCACTTGCTTCCATTAA
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