mRNA_P-wetherbeei_contig724.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig724.2.1
Unique NamemRNA_P-wetherbeei_contig724.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig724.2.1 vs. uniprot
Match: D7G7A8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.540e-25
Identity = 77/234 (32.91%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:  346 AAITTIEDAGERGEA-VRLRALLPADQGGHRRLPASFYDSIHFGISARNPYGVELSARENKRRTAELRTALAALPVPPTALLPTRWDNADSAAAXXXXXXXXXXXXXXXXXXXXXXXXXAAANAEADGSFQDEGITVRYAIADLLKASSAQPPRPHTRKDPAWTAAEAEVMKVARRFEQFKIYVWHPLEWGPGTAHDRHIHTSVLQEVRPCRTGTNGFRSTAVVYQA----PLP 1032
            A   TI D G      V L+    A + GH RLP  F+  +HFG+SA + +G +L   EN++R   LR  L      PT + PT ++                                             EG TV + +A  L     +  R   R DPAW  AE  V+  AR F+Q  +  WHP  WGPG   D ++HTSVLQEV P RTG     S  VVY+     PLP
Sbjct:    4 ATTITIGDGGRGSHRQVILQGATVAPKEGHLRLPDQFFQGVHFGVSAWDVWGEKLMDAENRKRNGALRQVLEGQDPQPTFIYPTMFEGGV------------------------------------------EGFTVAF-LAGSLSRQEMRSVR--ERSDPAWAEAETSVLTAARHFQQLTVTKWHPKVWGPGHERDENLHTSVLQEVLPTRTGLRALTSAVVVYRVETAVPLP 192
[Close]
BLAST of mRNA_P-wetherbeei_contig724.2.1 vs. uniprot
Match: A0A7S2CPZ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPZ2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.210e-9
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:  739 EGITVRYAIADLL-KASSAQPPRPHTRKDPAWTAAEAEVMKVARRFEQFKIYVWHPLEWGPGTAHDRHIHTSVLQEVRPCRTGTNGFRSTAVVYQ--APLP 1032
            +G  VR+   DL  +      P P +R +    AAE  V  VARRF Q  +  W+P +WG G  HD H+HT+VLQE+ P R+G    RS  VV++   P+P
Sbjct:  339 QGWVVRFCPEDLAAQGELGSGPTPKSRFE---HAAEG-VAVVARRFGQNIVLHWYPHQWGKGALHDEHLHTNVLQEIVPTRSGMQAVRSHGVVWRIGGPVP 435
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig724.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A8_ECTSI2.540e-2532.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPZ2_9STRA5.210e-940.59Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig724contigP-wetherbeei_contig724:981..2270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1109
Hectar predicted targeting categorysignal peptide
Exons2
Cds size861
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.6180778-UTR-P-wetherbeei_contig724:980..11541683186967.6180778-UTR-P-wetherbeei_contig724:980..1154Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig724 981..1154 +
1683186967.6427286-UTR-P-wetherbeei_contig724:2196..22701683186967.6427286-UTR-P-wetherbeei_contig724:2196..2270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig724 2197..2270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.6266599-CDS-P-wetherbeei_contig724:1154..12681683186967.6266599-CDS-P-wetherbeei_contig724:1154..1268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig724 1155..1268 +
1683186967.6346676-CDS-P-wetherbeei_contig724:1449..21961683186967.6346676-CDS-P-wetherbeei_contig724:1449..2196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig724 1450..2196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig724.2.1prot_P-wetherbeei_contig724.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig724 1155..2196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig724.2.1

>prot_P-wetherbeei_contig724.2.1 ID=prot_P-wetherbeei_contig724.2.1|Name=mRNA_P-wetherbeei_contig724.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=287bp
MTGTILAGLLSLAAVVYNTGQGPWLGFGATRRDFSKIPPPRPIPSPEEQA
RLRDQWLAAITTIEDAGERGEAVRLRALLPADQGGHRRLPASFYDSIHFG
ISARNPYGVELSARENKRRTAELRTALAALPVPPTALLPTRWDNADSAAA
AAAAGRRGGGAGNKKGGKDGGSGSGAAANAEADGSFQDEGITVRYAIADL
LKASSAQPPRPHTRKDPAWTAAEAEVMKVARRFEQFKIYVWHPLEWGPGT
AHDRHIHTSVLQEVRPCRTGTNGFRSTAVVYQAPLP*
back to top

mRNA from alignment at P-wetherbeei_contig724:981..2270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig724.2.1 ID=mRNA_P-wetherbeei_contig724.2.1|Name=mRNA_P-wetherbeei_contig724.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig724:981..2270+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGAGCGCAGGAAGTCCAGCGGAGTATCATCCTCGGCGGCGGCAATGC
GGATAACGAAGCCAGCGAAGGCGCCGACCGGCAGCGCCTATTGAGCGGCG
CTCCAGCCAAAGATGCCAAACCAACGCTGTTGGAGGATCTTCGTGATGCG
ATCGCCGCAGGATGGGTATTTATCATGACCGGCACGATACTCGCAGGGCT
TCTATCGTTAGCGGCCGTCGTTTACAACACGGGCCAAGGCCCGTGGCTCG
GTTTCGGCGCGACACGACGCGACTTCTCCAAGATACCAGTGAGCCAACCG
AGCCATCTGATCGCTTTGATGCTGCAACTTCGCTACTGCGTCGGCCTCAT
CGCCACCATGAATACAAGTTCTGCATGGCCTTTCTTTGACGACTTTCTAC
TTGCCTCTGTTTGTCTCTCCTTCTTTTTCTCGCTCCTCATCCCGCCTCTC
CTTCTGCGTTCGAGCACAGCCGCCCCGGCCGATCCCGTCGCCGGAGGAGC
AAGCGCGTCTCCGCGACCAGTGGCTCGCCGCCATTACCACCATCGAAGAC
GCCGGTGAGCGTGGCGAGGCGGTACGCCTGCGCGCGCTGCTCCCGGCCGA
CCAAGGCGGCCACCGCCGCCTCCCGGCGTCCTTCTACGATTCGATCCACT
TCGGAATCAGCGCCAGAAATCCGTATGGCGTGGAATTGAGCGCCCGTGAG
AACAAGCGCCGCACCGCCGAGCTGCGAACGGCTCTTGCGGCGCTGCCGGT
GCCGCCGACGGCGCTGTTGCCGACCAGATGGGACAATGCAGACTCAGCTG
CAGCGGCAGCAGCGGCTGGCAGAAGAGGCGGCGGTGCCGGCAATAAAAAA
GGCGGCAAGGACGGCGGAAGCGGGTCCGGCGCGGCTGCGAACGCGGAGGC
AGATGGGTCCTTCCAAGACGAGGGCATCACCGTCCGGTACGCGATCGCCG
ACCTCCTTAAGGCCTCCAGCGCGCAGCCGCCGCGGCCGCACACCCGCAAA
GACCCGGCGTGGACCGCGGCGGAGGCCGAGGTTATGAAGGTGGCACGGCG
CTTCGAGCAGTTCAAGATTTATGTGTGGCACCCGCTGGAGTGGGGTCCGG
GGACGGCGCATGACCGCCATATACACACGAGCGTCCTGCAGGAAGTGCGG
CCGTGTCGGACGGGCACCAATGGATTCCGGTCGACCGCCGTCGTCTACCA
GGCGCCGCTGCCTTGAATGCAGAGAATGTCTATTTTTTTTACTCTTAGAC
TAGAGTTTTAATGTGCATTAAAAGGTGAGGTAAAACCTTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig724:981..2270+

>mRNA_P-wetherbeei_contig724.2.1 ID=mRNA_P-wetherbeei_contig724.2.1|Name=mRNA_P-wetherbeei_contig724.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig724:981..2270+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCACGATACTCGCAGGGCTTCTATCGTTAGCGGCCGTCGTTTA
CAACACGGGCCAAGGCCCGTGGCTCGGTTTCGGCGCGACACGACGCGACT
TCTCCAAGATACCACCGCCCCGGCCGATCCCGTCGCCGGAGGAGCAAGCG
CGTCTCCGCGACCAGTGGCTCGCCGCCATTACCACCATCGAAGACGCCGG
TGAGCGTGGCGAGGCGGTACGCCTGCGCGCGCTGCTCCCGGCCGACCAAG
GCGGCCACCGCCGCCTCCCGGCGTCCTTCTACGATTCGATCCACTTCGGA
ATCAGCGCCAGAAATCCGTATGGCGTGGAATTGAGCGCCCGTGAGAACAA
GCGCCGCACCGCCGAGCTGCGAACGGCTCTTGCGGCGCTGCCGGTGCCGC
CGACGGCGCTGTTGCCGACCAGATGGGACAATGCAGACTCAGCTGCAGCG
GCAGCAGCGGCTGGCAGAAGAGGCGGCGGTGCCGGCAATAAAAAAGGCGG
CAAGGACGGCGGAAGCGGGTCCGGCGCGGCTGCGAACGCGGAGGCAGATG
GGTCCTTCCAAGACGAGGGCATCACCGTCCGGTACGCGATCGCCGACCTC
CTTAAGGCCTCCAGCGCGCAGCCGCCGCGGCCGCACACCCGCAAAGACCC
GGCGTGGACCGCGGCGGAGGCCGAGGTTATGAAGGTGGCACGGCGCTTCG
AGCAGTTCAAGATTTATGTGTGGCACCCGCTGGAGTGGGGTCCGGGGACG
GCGCATGACCGCCATATACACACGAGCGTCCTGCAGGAAGTGCGGCCGTG
TCGGACGGGCACCAATGGATTCCGGTCGACCGCCGTCGTCTACCAGGCGC
CGCTGCCTTGA
back to top