mRNA_P-wetherbeei_contig7238.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7238.4.1
Unique NamemRNA_P-wetherbeei_contig7238.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: D7FLI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI5_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.190e-41
Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   10 MARVRRFSGQLLFGGDSPPLSTVTKFPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELI 408
            M +VR + G  L   ++        FP   DS  C RWAV+TSI  PT T+RQL A  DWC+VVV D+  P+  +Y +  ++YLTP+DQE+LPYRI   LPWNHFGRKNIGYLYA+HHGA VIYD DDDN LI
Sbjct:    1 MEKVRTYEGARLPAPEA-------MFPAPLDSEKCERWAVLTSIFEPTDTVRQLGAAEDWCVVVVGDQNGPA--EYNVEGVIYLTPQDQEQLPYRIVPLLPWNHFGRKNIGYLYAVHHGATVIYDVDDDNALI 124          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: A0A7S3S1Z0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S1Z0_EMIHU)

HSP 1 Score: 144 bits (362), Expect = 3.650e-39
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    1 LFKMARVRRFSGQLLFGGDSPPLSTVTKFPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELI 408
            LF+  +VR + G   F    P        P    S  C +WAVVTSI PPT T+RQLAALP WC+VV  D+K P  V+Y +  ++YLTP  QE LP+     L WNHFGRKN+G+LYAI HGA+ +YDTDDDNEL+
Sbjct:   56 LFRAVKVRSYQGPRRFADWRPRPDAKKGAP----SKECRQWAVVTSIFPPTQTVRQLAALPSWCVVVAGDKKGP--VEYNLSGVLYLTPAMQEALPFESKAELRWNHFGRKNLGFLYAIQHGARWVYDTDDDNELL 185          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: W7SZI8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SZI8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.670e-38
Identity = 67/113 (59.29%), Postives = 84/113 (74.34%), Query Frame = 1
Query:   85 FPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELIVGPDG 423
            +PR  + L C +WAVVT+I  PT  +RQL  + DWC+VVV D+KSPS  D    +++YL+PE+QE LPY+I   L WNHFGRKNIG+LYA+HHGA+VIYDTDDDN L V   G
Sbjct:   97 YPRRAEQLLCNKWAVVTTIFGPTTLVRQLVGMKDWCVVVVGDKKSPSTYDIQSDTLIYLSPEEQEALPYQIIPLLKWNHFGRKNIGFLYAMHHGAEVIYDTDDDNILKVDSRG 209          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: A0A7S3YTT7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YTT7_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 2.670e-37
Identity = 71/148 (47.97%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 LFKM-ARVRRFSGQLLFGGDSPPLSTVTK---FPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMP--------SIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELI 408
            LF M  ++R F G+ LF       S+ +    + R      C RW V T+I  PT TI++LAAL +WC+VVV D+K P   D G           +VYLTPEDQE+LPY + + L WNHFGRKNIG+++A HHGA++IYD DDDN LI
Sbjct:  124 LFTMDEKIRDFPGERLFADGVAATSSESSNGNYARMSGVSTCERWGVCTTIFEPTETIKELAALGNWCVVVVGDKKGPKSYDLGAMRNGTAYPGQVVYLTPEDQEKLPYALTNRLKWNHFGRKNIGFIFAAHHGAKMIYDVDDDNTLI 271          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: A0A0M0JI26_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JI26_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 4.050e-36
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    1 LFKMARVRRFSGQLLFGGDSPPLSTVTKFPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNEL 405
            LF+  RVR +S   LF    PPL +       P    C  WAV T+I  PT T++++AAL DWCLV+  D+KSP + +       YL+PE QE+LP+     L WNHFGRKN+G+LYAI  GA+ +YDTDDDNEL
Sbjct:   19 LFRAVRVRTYSDARLFAAWKPPLQSPA-----PARSRCKNWAVTTTIFAPTTTVKRIAALEDWCLVIAGDKKSPREYNVSGKHAYYLSPEAQEQLPFATRKLLRWNHFGRKNLGFLYAIQQGARWVYDTDDDNEL 148          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: W7TUS0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUS0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.160e-35
Identity = 69/142 (48.59%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 LFKMARVRRFSGQLLFGGDSPPLSTVTK-FPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELIVGPDG 423
            +F  A+ R + G   F  +        K +PR  + L C +WAVVT+I  PT  ++QL  + DWC+VVV D++SPS  D    ++++L PE+QE LPY I   L WNHFGRKNIG+LYA+ HGA+VIYDTDDDN L V   G
Sbjct:   68 VFVAAKRRTYHGSRPFSSNISTSGVSHKPYPRSAEQLTCNKWAVVTTIFGPTALVKQLVEMKDWCVVVVGDQQSPSTYDIQSDNLIFLGPEEQEALPYHIIPLLKWNHFGRKNIGFLYAMQHGAEVIYDTDDDNILKVDSRG 209          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: A0A6H5JQ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ39_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 5.260e-35
Identity = 69/141 (48.94%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 LFKMARVRRFSGQLLFGGDSPPLSTVTKFPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELIVGPDG 423
            +F M ++R F G  +        + +   P   D   C +WAV+TSI  PT T++QLA L  WC+VVV D+  P+  +Y +  + YLTP DQ+ LPYRI   LPWNHFGRKN+GY+YAI HGA+VIYD DDDN LI   +G
Sbjct:   48 VFAMEQIRTFEGPRV----DFDAAEILPGPPPADEEMCEKWAVLTSIFEPTETVKQLAELRGWCVVVVGDKNGPA--EYHVTGVKYLTPGDQDALPYRITEILPWNHFGRKNVGYMYAIQHGAKVIYDVDDDNALIHPEEG 182          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: D8LCM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM9_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.530e-34
Identity = 68/142 (47.89%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 LFKMARVRRFSGQLLFGGDSPP-LSTVTKFPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELIVGPDG 423
            +F M +VR ++G  +    +PP +   + FP       C RWAV+ S + PT  ++QLA L +WC+VVV D+  P+  +Y +  +V LTP DQE LPYRI   +PWNH GRKNIGYLYAIHHGA+VIYD DD + L+   +G
Sbjct:   53 MFSMEKVRTYAGPRMEIRTTPPSVEPSSLFPPPAAEDTCERWAVLASADEPTDAVKQLAELGEWCVVVVGDKDGPT--EYNVVGVVLLTPSDQEALPYRITDLIPWNHVGRKNIGYLYAIHHGAKVIYDVDDAHVLMRPEEG 192          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: A0A7S1INI2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1INI2_9EUGL)

HSP 1 Score: 130 bits (328), Expect = 1.360e-33
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 LFKMARVRRFSGQLLFGGDSPPLSTVTKFPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELIV 411
            LF+M R R+F    L         +  +   +     CA+WAV T+I  P+ T++Q+A L  WC+VVV D+K+P  + + + + V L  EDQ +LPYRIA  LPWNHFGRKN+G++YA+ HGA+VIYD DDDNELI+
Sbjct:   44 LFRMQRTRQFPMHEL-------RKSAAQTTGWKQGKQCAQWAVSTTIWEPSKTLKQIAKLKTWCIVVVLDKKTP--LPFEVENAVILGVEDQLKLPYRIARRLPWNHFGRKNVGFMYAVAHGAEVIYDCDDDNELII 171          
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Match: A0A1S3JBQ2_LINUN (probable glycosyltransferase STELLO2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JBQ2_LINUN)

HSP 1 Score: 131 bits (329), Expect = 1.420e-33
Identity = 65/134 (48.51%), Postives = 87/134 (64.93%), Query Frame = 1
Query:    4 FKMARVRRFSGQLLFGGDSPPLSTVTKFPRFPDSLHCARWAVVTSINPPTLTIRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHLPWNHFGRKNIGYLYAIHHGAQVIYDTDDDNEL 405
            F+M RVR F      G   P  ST T + + P +  C +W V+T+I  P+  ++QL+ +  WC+VVVAD+K P K  Y +P++ YL+  +QE   + I   L WNHFGRKNIGY+YAIHHGA+ IYDTDDDN L
Sbjct:   68 FQMKRVRDFEKDKRVGYRPP--STCTDYHKKPPATPCKKWVVITTIFEPSELVKQLSEITSWCVVVVADKKGPEK--YVVPNVKYLSVLEQESCQFHICKLLIWNHFGRKNIGYMYAIHHGAEYIYDTDDDNVL 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7238.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLI5_ECTSI1.190e-4156.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3S1Z0_EMIHU3.650e-3952.21Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
W7SZI8_9STRA5.670e-3859.29Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3YTT7_9EUKA2.670e-3747.97Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A0M0JI26_9EUKA4.050e-3648.89Uncharacterized protein (Fragment) n=1 Tax=Chrysoc... [more]
W7TUS0_9STRA2.160e-3548.59Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A6H5JQ39_9PHAE5.260e-3548.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCM9_ECTSI3.530e-3447.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1INI2_9EUGL1.360e-3347.45Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A1S3JBQ2_LINUN1.420e-3348.51probable glycosyltransferase STELLO2 n=1 Tax=Lingu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7238contigP-wetherbeei_contig7238:2648..3070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLI5
PFAMsSTELLO
Model size423
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Exons1
Evalue1.74e-42
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Descriptionplant-type cell wall cellulose biosynthetic process
Cds size414
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.5507557-UTR-P-wetherbeei_contig7238:2647..26561683186967.5507557-UTR-P-wetherbeei_contig7238:2647..2656Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7238 2648..2656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186967.561561-CDS-P-wetherbeei_contig7238:2656..30701683186967.561561-CDS-P-wetherbeei_contig7238:2656..3070Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7238 2657..3070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7238.4.1prot_P-wetherbeei_contig7238.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7238 2657..3070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7238.4.1

>prot_P-wetherbeei_contig7238.4.1 ID=prot_P-wetherbeei_contig7238.4.1|Name=mRNA_P-wetherbeei_contig7238.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MARVRRFSGQLLFGGDSPPLSTVTKFPRFPDSLHCARWAVVTSINPPTLT
IRQLAALPDWCLVVVADRKSPSKVDYGMPSIVYLTPEDQERLPYRIAHHL
PWNHFGRKNIGYLYAIHHGAQVIYDTDDDNELIVGPDG
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mRNA from alignment at P-wetherbeei_contig7238:2648..3070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7238.4.1 ID=mRNA_P-wetherbeei_contig7238.4.1|Name=mRNA_P-wetherbeei_contig7238.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig7238:2648..3070+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTTAAGATGGCTCGCGTACGACGCTTCAGCGGCCAGCTCCTTTTTGG CGGTGACTCGCCACCACTGTCCACTGTTACCAAGTTCCCTCGCTTTCCTG ATTCTTTGCACTGTGCGCGGTGGGCCGTCGTGACGAGCATCAACCCACCG ACGCTAACGATCCGGCAGCTTGCCGCGCTGCCGGACTGGTGCCTTGTCGT GGTGGCCGACCGAAAGAGCCCGAGCAAGGTTGACTACGGCATGCCATCAA TAGTCTACCTGACTCCGGAGGACCAGGAGCGGCTGCCGTACCGCATCGCG CACCACCTCCCGTGGAACCACTTCGGCAGGAAAAATATCGGCTATCTTTA TGCCATCCACCACGGCGCACAGGTGATTTATGACACCGACGACGACAATG AGCTCATCGTTGGCCCCGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7238:2648..3070+

>mRNA_P-wetherbeei_contig7238.4.1 ID=mRNA_P-wetherbeei_contig7238.4.1|Name=mRNA_P-wetherbeei_contig7238.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig7238:2648..3070+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCGCGTACGACGCTTCAGCGGCCAGCTCCTTTTTGGCGGTGACTC
GCCACCACTGTCCACTGTTACCAAGTTCCCTCGCTTTCCTGATTCTTTGC
ACTGTGCGCGGTGGGCCGTCGTGACGAGCATCAACCCACCGACGCTAACG
ATCCGGCAGCTTGCCGCGCTGCCGGACTGGTGCCTTGTCGTGGTGGCCGA
CCGAAAGAGCCCGAGCAAGGTTGACTACGGCATGCCATCAATAGTCTACC
TGACTCCGGAGGACCAGGAGCGGCTGCCGTACCGCATCGCGCACCACCTC
CCGTGGAACCACTTCGGCAGGAAAAATATCGGCTATCTTTATGCCATCCA
CCACGGCGCACAGGTGATTTATGACACCGACGACGACAATGAGCTCATCG
TTGGCCCCGACGGC
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