mRNA_P-wetherbeei_contig7218.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: A0A835ZF85_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF85_9STRA) HSP 1 Score: 103 bits (256), Expect = 8.100e-19 Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFY 275
VV KK YQN H D L+GD WYSQ+AFRALNQA GR IRH+ D+ AI+LADPRF+ S V LS+W R V R E ++PL+ F+
Sbjct: 905 VVAKKAYQNARHARDKAHLSGDAWYSQEAFRALNQAMGRCIRHRADFGAIILADPRFQFSGVQGGLSKWVRAQVQRFDAAEGVVEPLKRFF 995
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: D7FLD2_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD2_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 2.950e-16 Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESY-VVDNLSRWARGHVMRCGTVEMSMQPLQLFYWRHRS---------------AGTAAVAGDESAG 329
V+LKK YQ++ D R++ G WYS QAFRA+NQA GR IRH+ D+ AIVL DPR+ S +LS+W R V +C +VE+S+ ++ F+ +H+ AG+++V GD AG
Sbjct: 798 VMLKKEYQDQRRTRDPRLVGGRAWYSLQAFRAVNQAVGRCIRHRSDFGAIVLCDPRYASSTETTASLSKWVRSSVRQCRSVEVSLPLVEAFFRQHQPQKDQHHAVQPEASACAGSSSVGGDGDAG 922
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: A0A7S3V2I3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V2I3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.880e-15 Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEM-SMQPLQLFYWRHR 287
+ LK++YQ+ S+ L GD WYSQQA+RALNQA GR IRH+DD+ AI+L D RF V NLS+W R H R + M ++Q LQ F++ H+
Sbjct: 139 IKLKRQYQDN----HSQGLKGDMWYSQQAWRALNQALGRVIRHRDDFGAIILLDKRFSRKGVTQNLSKWMR-HSRRVYSSPMDTLQSLQEFFYSHK 229
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: A0A6J1C1F9_MOMCH (Fanconi anemia group J protein homolog isoform X1 n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1C1F9_MOMCH) HSP 1 Score: 90.1 bits (222), Expect = 8.710e-15 Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFY 275
V LKK++ N+ + +L+G++WY QQAFRALNQA GR IRHK DY AI+L D RF+E +S+W R V +C E+SM+ L+ F+
Sbjct: 693 VSLKKKF-NDTYKLSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIILLDERFQEERNRTYISKWLRKSVKQCDNFELSMEGLKSFF 782
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: A0A7S0I7Q2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I7Q2_MICPS) HSP 1 Score: 84.0 bits (206), Expect = 8.950e-15 Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFYWRH 284
V LK+ Y NE +L+GD+WYSQQAFRALNQA GR +RH++D+ AI+LAD R+ + +L +W R + +C E S + L+ F+ H
Sbjct: 58 VELKRLYNNEG--VSRGLLSGDQWYSQQAFRALNQAVGRCLRHRNDHGAILLADERYLRDDMTRHLPKWLRPAMRKCAGFEDSRRGLRSFFAMH 149
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: A0A6J2XWB6_SITOR (Regulator of telomere elongation helicase 1 homolog n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2XWB6_SITOR) HSP 1 Score: 89.7 bits (221), Expect = 9.810e-15 Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFY 275
VVLK+RY ++ H D L G WYS +A RA+NQA GR IRHKDDY AI+L D RF + + +S+W RGH+ G ++ L F+
Sbjct: 643 VVLKRRYLDQCHAKDQDYLRGQDWYSLEASRAVNQAIGRVIRHKDDYGAILLLDQRFNNFRIKEQMSKWLRGHITVVGKYSEIIRDLSQFF 733
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: A0A0E0IND0_ORYNI (Helicase ATP-binding domain-containing protein n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0IND0_ORYNI) HSP 1 Score: 89.4 bits (220), Expect = 1.580e-14 Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFY 275
V LKKRY N+++ + +L+G++WY QAFRALNQA GR IRHK DY I+L D R++E + +S+W R + CGT + +M L F+
Sbjct: 759 VKLKKRY-NDSYKSSKDLLSGNEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQEERNIVYISKWLRNSIRNCGTFQETMDGLTRFF 848
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: B9G4Y1_ORYSJ (Helicase ATP-binding domain-containing protein n=10 Tax=Oryza TaxID=4527 RepID=B9G4Y1_ORYSJ) HSP 1 Score: 89.4 bits (220), Expect = 1.590e-14 Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFY 275
V LKKRY N+++ + +L+G++WY QAFRALNQA GR IRHK DY I+L D R++E + +S+W R + CGT + +M L F+
Sbjct: 652 VKLKKRY-NDSYKSSKDLLSGNEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQEERNIVYISKWLRNSIRNCGTFQETMDGLTRFF 741
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: A0A0E0EUM7_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0EUM7_9ORYZ) HSP 1 Score: 89.4 bits (220), Expect = 1.860e-14 Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFY 275
V LKKRY N+++ + +L+G++WY QAFRALNQA GR IRHK DY I+L D R++E + +S+W R + CGT + +M L F+
Sbjct: 2357 VKLKKRY-NDSYKSSKDLLSGNEWYCHQAFRALNQAAGRCIRHKFDYGGIILIDERYQEERNIVYISKWLRNSIRNCGTFQETMDGLTRFF 2446
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Match: UPI001929AB4C (LOW QUALITY PROTEIN: Fanconi anemia group J protein homolog n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929AB4C) HSP 1 Score: 89.0 bits (219), Expect = 2.010e-14 Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 3
Query: 3 VVLKKRYQNEAHHADSRMLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSRWARGHVMRCGTVEMSMQPLQLFY 275
VVLKKRY N+ + + +++G +WY QAFRALNQA GR IRH+ DY AI+L D RF+E + +S+W R + + + + S+Q LQ F+
Sbjct: 685 VVLKKRY-NDTYKSSKNLISGSEWYCHQAFRALNQAAGRCIRHRHDYGAIILLDERFKEERNLTYISKWLRKSIKQYDSFDKSLQGLQAFF 774 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7218.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7218.1.1 >prot_P-wetherbeei_contig7218.1.1 ID=prot_P-wetherbeei_contig7218.1.1|Name=mRNA_P-wetherbeei_contig7218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=657bp MLTGDKWYSQQAFRALNQAFGRAIRHKDDYAAIVLADPRFEESYVVDNLSback to top mRNA from alignment at P-wetherbeei_contig7218:697..3100- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7218.1.1 ID=mRNA_P-wetherbeei_contig7218.1.1|Name=mRNA_P-wetherbeei_contig7218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2404bp|location=Sequence derived from alignment at P-wetherbeei_contig7218:697..3100- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7218:697..3100- >mRNA_P-wetherbeei_contig7218.1.1 ID=mRNA_P-wetherbeei_contig7218.1.1|Name=mRNA_P-wetherbeei_contig7218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1971bp|location=Sequence derived from alignment at P-wetherbeei_contig7218:697..3100- (Phaeothamnion wetherbeei SAG_119_79)back to top |