mRNA_P-wetherbeei_contig7200.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7200.1.1
Unique NamemRNA_P-wetherbeei_contig7200.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7200.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7200contigP-wetherbeei_contig7200:384..1804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1053
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009810.1
Cds size621
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.0988214-UTR-P-wetherbeei_contig7200:383..7811683186965.0988214-UTR-P-wetherbeei_contig7200:383..781Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7200 384..781 -
1683186965.1105118-UTR-P-wetherbeei_contig7200:1048..10631683186965.1105118-UTR-P-wetherbeei_contig7200:1048..1063Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7200 1049..1063 -
1683186965.1490998-UTR-P-wetherbeei_contig7200:1785..18041683186965.1490998-UTR-P-wetherbeei_contig7200:1785..1804Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7200 1786..1804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186965.1250799-CDS-P-wetherbeei_contig7200:1063..15691683186965.1250799-CDS-P-wetherbeei_contig7200:1063..1569Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7200 1064..1569 -
1683186965.13921-CDS-P-wetherbeei_contig7200:1670..17851683186965.13921-CDS-P-wetherbeei_contig7200:1670..1785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7200 1671..1785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7200.1.1prot_P-wetherbeei_contig7200.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7200 1064..1785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7200.1.1

>prot_P-wetherbeei_contig7200.1.1 ID=prot_P-wetherbeei_contig7200.1.1|Name=mRNA_P-wetherbeei_contig7200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
MAEPRAPIRLVTCFLKAVSELRMYEATAVEEALVLVGDILEHEPKNPMML
DYRETLMRSLREAAARAAEEKENDEDDGSSESSSSEEGNASGSDGSSSES
EGEEEATGGTDEATTDDESSVPRAARESLRDSECKRGSHIGARDIDGSKH
SHGSGGGSGCSSGGGSRRNSGGDRRSIGGHVCSARGFGGSACARGAAAEA
QAKQPS*
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mRNA from alignment at P-wetherbeei_contig7200:384..1804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7200.1.1 ID=mRNA_P-wetherbeei_contig7200.1.1|Name=mRNA_P-wetherbeei_contig7200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1421bp|location=Sequence derived from alignment at P-wetherbeei_contig7200:384..1804- (Phaeothamnion wetherbeei SAG_119_79)
GCATGCCGCTTCGAAGAACATGGCGGAACCGCGAGCACCCATCCGGCTGG
TGACATGCTTCCTGAAAGCCGTCTCGGAGCTTCGCATGTACGAGGCGACG
GCAGTGGAAGAGGCGCTTGTGCTCGTAGGCGATAGTAAGAGACCTTGCAC
TTCTTTCTTTCGTCTGGCCGTTTGCCCATTTCTCAACTCGTCACTTTTAT
CCTCTTCTCTGCGATACCTTTCCTCGCCTCCACAGTTCTGGAGCACGAGC
CCAAAAATCCAATGATGCTCGATTACCGAGAGACTTTGATGCGCTCCCTC
CGCGAAGCGGCGGCGCGCGCTGCAGAAGAGAAAGAGAACGACGAGGATGA
TGGAAGCAGCGAATCCTCGTCAAGCGAGGAAGGCAATGCTAGCGGTTCCG
ATGGCTCTTCTTCGGAGAGCGAAGGCGAGGAAGAGGCGACGGGCGGAACC
GACGAAGCGACTACGGACGACGAGTCCAGCGTCCCTCGCGCAGCTCGCGA
ATCGCTTCGCGACTCGGAGTGCAAGCGTGGCAGCCACATTGGAGCACGGG
ACATCGATGGCAGCAAGCATAGTCACGGCAGCGGCGGCGGCAGCGGCTGC
AGCAGCGGCGGGGGTAGCAGGAGGAACAGCGGCGGGGACAGGAGGAGCAT
CGGCGGTCATGTCTGCAGCGCTCGAGGGTTCGGAGGCAGCGCCTGCGCTC
GTGGTGCGGCAGCGGAAGCACAGGCAAAGCAGCCATCATGACGCTCGACG
CCAAAGGTGAGAGTGAGTAAGCAGTCTGGTTTTCAATTACTGAATAATTG
CTCGGTCAGAACAGAAATAAATGCGACGTTGCATCGGCTGCGTCTGATTG
AACTGAAGAATCAAATTGGGGACCCCTTGGGACCTTTTCCTTCCTGTGTT
GGCCATGCTCAAGCCGTCTTGCGCGAGTTTATCGCGGCCCTTTCGTTCTC
TGCATGCATCTTTAAGTACCGCTTCCCTTCCCTTCTTTCCACTCCCGGGT
TCTCTCCTCTTTCCCCTTGCCAGGCCGCTGTGGCGCCGTCGCACGAAGCG
GCGGCGTTGTACGCGCGGCAGCGGGAACTGCGGATTCACACGGAGCGGCG
TGCTCGAGAGGGGGCGATAGTGATGGGGGCCGAGAGGGCTGGGCAGGCCC
TCTCGCCGTGAGATTTTGGCAGAGCAACGGTAGGACGAAAAATAGTAGTC
AATTCCGGAAAATAAGGTCGAGCGCTGCTGACTTTTTGGCCAACCGTGCG
CGCGCCGCCGGCCATCCGCCCAGCCGCTGCGGGCCGCGATGAGCGGACGG
CATATCGTTCCCGCTCTTTGCCTCCCCCTTACACTTTTCTTCAGAACCTT
CGAGGATTTTTTTTGAGGAAAGTCTGGACTAGGGCGATATCCAGGAAGGA
GGTACTGTTGGAGTATCGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7200:384..1804-

>mRNA_P-wetherbeei_contig7200.1.1 ID=mRNA_P-wetherbeei_contig7200.1.1|Name=mRNA_P-wetherbeei_contig7200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig7200:384..1804- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAACCGCGAGCACCCATCCGGCTGGTGACATGCTTCCTGAAAGC
CGTCTCGGAGCTTCGCATGTACGAGGCGACGGCAGTGGAAGAGGCGCTTG
TGCTCGTAGGCGATATTCTGGAGCACGAGCCCAAAAATCCAATGATGCTC
GATTACCGAGAGACTTTGATGCGCTCCCTCCGCGAAGCGGCGGCGCGCGC
TGCAGAAGAGAAAGAGAACGACGAGGATGATGGAAGCAGCGAATCCTCGT
CAAGCGAGGAAGGCAATGCTAGCGGTTCCGATGGCTCTTCTTCGGAGAGC
GAAGGCGAGGAAGAGGCGACGGGCGGAACCGACGAAGCGACTACGGACGA
CGAGTCCAGCGTCCCTCGCGCAGCTCGCGAATCGCTTCGCGACTCGGAGT
GCAAGCGTGGCAGCCACATTGGAGCACGGGACATCGATGGCAGCAAGCAT
AGTCACGGCAGCGGCGGCGGCAGCGGCTGCAGCAGCGGCGGGGGTAGCAG
GAGGAACAGCGGCGGGGACAGGAGGAGCATCGGCGGTCATGTCTGCAGCG
CTCGAGGGTTCGGAGGCAGCGCCTGCGCTCGTGGTGCGGCAGCGGAAGCA
CAGGCAAAGCAGCCATCATGA
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