mRNA_P-wetherbeei_contig72.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig72.3.1
Unique NamemRNA_P-wetherbeei_contig72.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig72.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig72contigP-wetherbeei_contig72:5676..6197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.6932647-UTR-P-wetherbeei_contig72:5675..57001683186964.6932647-UTR-P-wetherbeei_contig72:5675..5700Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig72 5676..5700 +
1683186964.716888-UTR-P-wetherbeei_contig72:6183..61971683186964.716888-UTR-P-wetherbeei_contig72:6183..6197Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig72 6184..6197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.7049427-CDS-P-wetherbeei_contig72:5700..61831683186964.7049427-CDS-P-wetherbeei_contig72:5700..6183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig72 5701..6183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig72.3.1prot_P-wetherbeei_contig72.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig72 5701..6183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig72.3.1

>prot_P-wetherbeei_contig72.3.1 ID=prot_P-wetherbeei_contig72.3.1|Name=mRNA_P-wetherbeei_contig72.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MSDGRKVSSCCYNGSSSSKSSSSSISKSSSGAVAISDHAAHFLRARGLAV
PRDAASVRRVVAALVDDLEQIRAGEPTGLTRGQRLLQMEADAKEERLVEL
EKEVNELRERREIMEHEHSRVQPGGATADAALAEGLQMFSEFQHAIEQEK
PEYVSEEMPT*
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mRNA from alignment at P-wetherbeei_contig72:5676..6197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig72.3.1 ID=mRNA_P-wetherbeei_contig72.3.1|Name=mRNA_P-wetherbeei_contig72.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig72:5676..6197+ (Phaeothamnion wetherbeei SAG_119_79)
GGATGAGAGAGAGACGCCGCAAACCATGAGCGACGGACGAAAGGTCAGCA
GCTGCTGCTACAACGGCAGCAGCAGCAGCAAGAGCAGCAGCAGCAGCATC
AGCAAGAGCAGCAGCGGTGCCGTCGCGATCAGCGACCACGCCGCACACTT
CTTGAGAGCCAGAGGCCTCGCCGTGCCTCGAGATGCCGCCTCGGTACGAC
GCGTGGTAGCGGCGCTCGTGGATGACTTGGAGCAGATTCGGGCGGGCGAA
CCGACGGGACTGACACGGGGCCAGCGGCTGCTGCAAATGGAAGCAGACGC
GAAAGAGGAACGCCTTGTCGAGCTGGAAAAGGAGGTAAACGAGCTTCGGG
AGCGACGCGAAATCATGGAGCACGAGCACAGTAGGGTGCAGCCGGGCGGC
GCCACAGCCGATGCCGCTCTCGCGGAGGGACTGCAAATGTTTTCCGAGTT
CCAGCACGCGATTGAGCAAGAGAAACCAGAATATGTGAGTGAAGAAATGC
CAACATGATATTTTATCACGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig72:5676..6197+

>mRNA_P-wetherbeei_contig72.3.1 ID=mRNA_P-wetherbeei_contig72.3.1|Name=mRNA_P-wetherbeei_contig72.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig72:5676..6197+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACGGACGAAAGGTCAGCAGCTGCTGCTACAACGGCAGCAGCAG
CAGCAAGAGCAGCAGCAGCAGCATCAGCAAGAGCAGCAGCGGTGCCGTCG
CGATCAGCGACCACGCCGCACACTTCTTGAGAGCCAGAGGCCTCGCCGTG
CCTCGAGATGCCGCCTCGGTACGACGCGTGGTAGCGGCGCTCGTGGATGA
CTTGGAGCAGATTCGGGCGGGCGAACCGACGGGACTGACACGGGGCCAGC
GGCTGCTGCAAATGGAAGCAGACGCGAAAGAGGAACGCCTTGTCGAGCTG
GAAAAGGAGGTAAACGAGCTTCGGGAGCGACGCGAAATCATGGAGCACGA
GCACAGTAGGGTGCAGCCGGGCGGCGCCACAGCCGATGCCGCTCTCGCGG
AGGGACTGCAAATGTTTTCCGAGTTCCAGCACGCGATTGAGCAAGAGAAA
CCAGAATATGTGAGTGAAGAAATGCCAACATGA
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