mRNA_P-wetherbeei_contig7198.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7198.1.2
Unique NamemRNA_P-wetherbeei_contig7198.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7198.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7198contigP-wetherbeei_contig7198:20..1830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1133
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_001110.1
Cds size1008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.644186-CDS-P-wetherbeei_contig7198:19..1691683186964.644186-CDS-P-wetherbeei_contig7198:19..169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7198 20..169 -
1683186964.653385-CDS-P-wetherbeei_contig7198:546..7921683186964.653385-CDS-P-wetherbeei_contig7198:546..792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7198 547..792 -
1683186964.6618176-CDS-P-wetherbeei_contig7198:1094..17061683186964.6618176-CDS-P-wetherbeei_contig7198:1094..1706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7198 1095..1706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186964.6701553-UTR-P-wetherbeei_contig7198:1706..18301683186964.6701553-UTR-P-wetherbeei_contig7198:1706..1830Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7198 1707..1830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7198.1.2prot_P-wetherbeei_contig7198.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7198 20..1706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7198.1.2

>prot_P-wetherbeei_contig7198.1.2 ID=prot_P-wetherbeei_contig7198.1.2|Name=mRNA_P-wetherbeei_contig7198.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=336bp
MGASASGFADPCFSCLFVEIDDNASAYQHRQTGSNIPEPLDFAALDAEEE
ALGSGPYIDPGLAAVQLPLGTPPALAAKVEVAVSPGAPAAAAAAAAAAAD
PAPAEKRPAEPTPAEEEPERTPVASEEERHGKEGIESFFDIPTAGSEAVD
PAVIKTDIQLVDDGASLAHLLAKVEELGNVNLALQEEARRQNAVRDTKAA
VRVKAMRQFLAVMGEGGPGLRVKKYHRSGGKGEKGKWAPRVIRYAAAQAG
DEGSGGTITWDTRRLFARESSGVDICDIVKVESSGKFVWISVDGSTRLAF
ETRRSLDALLLSRCIEYLMEDVYGEEIDISADEAAP
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mRNA from alignment at P-wetherbeei_contig7198:20..1830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7198.1.2 ID=mRNA_P-wetherbeei_contig7198.1.2|Name=mRNA_P-wetherbeei_contig7198.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1811bp|location=Sequence derived from alignment at P-wetherbeei_contig7198:20..1830- (Phaeothamnion wetherbeei SAG_119_79)
ATCGACGCTGGACGCTGCGGCGCCAAACGGCCGTCGGAAATCGCTCAAAC
GCTCTTTTGCAGGAAGCCGTTGAATCCCCGTTTGGTCAAAGTGAAGAGAG
TTGAGCAAGCAACGCCTGGCAACCATGGGTGCATCCGCTTCAGGGTTCGC
TGACCCGTGCTTCTCCTGCCTCTTTGTGGAGATCGACGATAACGCTTCTG
CCTATCAGCATCGCCAAACTGGTTCGAACATTCCGGAGCCCCTAGATTTT
GCAGCACTAGATGCAGAGGAGGAGGCATTGGGATCAGGCCCATATATCGA
CCCAGGCCTCGCAGCGGTACAGCTTCCGCTTGGCACGCCGCCAGCCCTGG
CCGCTAAAGTCGAGGTCGCTGTTTCGCCTGGTGCTCCTGCTGCCGCCGCC
GCTGCTGCCGCTGCCGCAGCCGATCCAGCTCCTGCCGAAAAACGCCCCGC
GGAGCCAACGCCCGCTGAAGAGGAGCCCGAGCGGACGCCCGTCGCCTCCG
AGGAGGAGCGGCATGGCAAGGAGGGCATCGAGAGTTTCTTCGATATCCCA
ACGGCCGGCAGCGAGGCGGTCGACCCGGCCGTTATCAAGACGGACATCCA
GCTGGTCGACGACGGCGCGTCGCTCGCCCACCTGCTGGCGAAGGTGGAGG
AATTGGGCAACGTCAATCTGGCGCTGCAGGAGGAGGCACGGCGGCAGAAC
GCCGTCAGGGACACCAAGGCCGCCGTCCGCGTCAAAGTAACGCGCATTTG
GGGGGGCTTTGATGTTGTGTTTTTGGTCTCACTCAGCGATTAAGCAATTT
ACCAAAGCCGCTGTTTACATCGACGTACTATTAGATTCAAGGGAAAAGTT
GTCTGGTTTGGTTTGCTGGTGCCAATCTTTTCTTTGGGCGGGGTTCTAAG
TCACCAGGACCCTACTGAAGCGATGTTTCTGCTGTCTAGTCTTGTAACGA
CTCTCTATTTGATTAATAACTACACCCAATTTTGCCCACCCCCCCCAATA
TCCATGCCGCACCCTAATCGCGCTGAAACCCTGCACAGGCCATGCGGCAG
TTTCTGGCCGTGATGGGCGAGGGCGGGCCCGGGCTGCGCGTCAAGAAGTA
CCACCGCAGCGGCGGAAAGGGAGAGAAGGGGAAGTGGGCCCCGCGAGTCA
TCCGATACGCGGCGGCGCAGGCTGGAGACGAGGGCTCCGGCGGCACCATC
ACCTGGGACACCCGCCGCCTCTTCGCGCGGGAGTCGTCGGGCGTCGACAT
CTGCGATATTGTCAAGGTCGAGTCCAGCGGAAAGGTGGGTGCGGAAAAAG
GAAGATGAAATGTAAGAATGATTCAGCGAGCCAAACGGAAATATTCGGCG
GGGAAACGAAAGGCTGTGGCCGAGCAGATTTTAGGTGGAGGCGGCATTTG
GCCGTCAGTTGAGCATGCCGGTGTCGGTAGTGCACTCCAATCGTGTTCAG
GGCATTTTTGTGTATCATTCGAAGGAAGGCCAGCTGTGACTACAGTTGCA
CGCGGCGCAACTGTAGTCGTCTTGCGATCGATAGTGTACCTACAAGCCCA
GCCGTTTTGGGTGTGGCATAAAAATCGCTCGAGTGTACGTGCCGATTCTC
ATTACATCTCATCCTTCATCCCATTTCCTCTGCTTCTCCCTTTCCCCGCC
TCTCTCGGCAGTTCGTTTGGATCTCGGTGGACGGCAGCACCCGCCTGGCC
TTCGAGACGCGCCGCAGCCTCGACGCACTTCTCCTCTCCCGCTGCATCGA
GTACCTCATGGAGGACGTCTACGGCGAAGAGATAGACATCTCCGCCGACG
AAGCGGCGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7198:20..1830-

>mRNA_P-wetherbeei_contig7198.1.2 ID=mRNA_P-wetherbeei_contig7198.1.2|Name=mRNA_P-wetherbeei_contig7198.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig7198:20..1830- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGCATCCGCTTCAGGGTTCGCTGACCCGTGCTTCTCCTGCCTCTT
TGTGGAGATCGACGATAACGCTTCTGCCTATCAGCATCGCCAAACTGGTT
CGAACATTCCGGAGCCCCTAGATTTTGCAGCACTAGATGCAGAGGAGGAG
GCATTGGGATCAGGCCCATATATCGACCCAGGCCTCGCAGCGGTACAGCT
TCCGCTTGGCACGCCGCCAGCCCTGGCCGCTAAAGTCGAGGTCGCTGTTT
CGCCTGGTGCTCCTGCTGCCGCCGCCGCTGCTGCCGCTGCCGCAGCCGAT
CCAGCTCCTGCCGAAAAACGCCCCGCGGAGCCAACGCCCGCTGAAGAGGA
GCCCGAGCGGACGCCCGTCGCCTCCGAGGAGGAGCGGCATGGCAAGGAGG
GCATCGAGAGTTTCTTCGATATCCCAACGGCCGGCAGCGAGGCGGTCGAC
CCGGCCGTTATCAAGACGGACATCCAGCTGGTCGACGACGGCGCGTCGCT
CGCCCACCTGCTGGCGAAGGTGGAGGAATTGGGCAACGTCAATCTGGCGC
TGCAGGAGGAGGCACGGCGGCAGAACGCCGTCAGGGACACCAAGGCCGCC
GTCCGCGTCAAAGCCATGCGGCAGTTTCTGGCCGTGATGGGCGAGGGCGG
GCCCGGGCTGCGCGTCAAGAAGTACCACCGCAGCGGCGGAAAGGGAGAGA
AGGGGAAGTGGGCCCCGCGAGTCATCCGATACGCGGCGGCGCAGGCTGGA
GACGAGGGCTCCGGCGGCACCATCACCTGGGACACCCGCCGCCTCTTCGC
GCGGGAGTCGTCGGGCGTCGACATCTGCGATATTGTCAAGGTCGAGTCCA
GCGGAAAGTTCGTTTGGATCTCGGTGGACGGCAGCACCCGCCTGGCCTTC
GAGACGCGCCGCAGCCTCGACGCACTTCTCCTCTCCCGCTGCATCGAGTA
CCTCATGGAGGACGTCTACGGCGAAGAGATAGACATCTCCGCCGACGAAG
CGGCGCCA
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