mRNA_P-wetherbeei_contig7174.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7174.3.1
Unique NamemRNA_P-wetherbeei_contig7174.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7174.3.1 vs. uniprot
Match: D8LQ95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ95_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.760e-15
Identity = 55/175 (31.43%), Postives = 74/175 (42.29%), Query Frame = 1 
Query:   10 WQRGVALYYLGRHAAAAIEFLRSAAAFEARFDEPATDERVWAAAALLRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGADADRGGDGGDPTARDIT-------------GRRFFGHFYLALWHEAHGRDGDARDALAAAVATGFPAPPGGERGDDVWLHLPRLHARLRGW 495
            W  GV LYYLGR+  AA+       +FE +F+E ATDER+W AAA +R                                    +  RGG    PT  D+              G  FF   +L L+H+AHG + +A   + AA    +P P      DD+W H PR+HA+ R W
Sbjct:  135 WPLGVILYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVY----NMFRGG----PTPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNP------DDLWYHTPRIHAKARNW 295
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BLAST of mRNA_P-wetherbeei_contig7174.3.1 vs. uniprot
Match: A0A7S1U8I8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8I8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.660e-11
Identity = 59/174 (33.91%), Postives = 77/174 (44.25%), Query Frame = 1 
Query:    4 YLWQRGVALYYLGRHAAAAIEFLRSAAAFEARFDEPATDERVWAAA---ALLRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AGADAD---RGGDGGDPTARDITGRRFFGHFYLALWHEAHGRDGDARDALAAAVATGFPAPPGGERGDDVWLHLPRLHARLRGW 495
            YL QRG+ LY L R   A  +F    A FE +F E AT+ER+WA A   ALL  G                                      + D   RG +   P  +D+ GRRF+  F+LAL  +  G D  ARD L +AV +     P  +R  D+W H+PR  A +RGW
Sbjct:   99 YLPQRGILLYLLDRVGDAQQQFASDIALFEGKFGEVATEERLWATACAGALLGVGQAQDALVESLQRLEKEGLVEPESRRVFRGILDVYTRKTEPDEIVRGWEADGP--QDLLGRRFYTAFFLALLADVQGSDERARDYLRSAVTS-----PHVKRNSDIWWHVPRKLADVRGW 265
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BLAST of mRNA_P-wetherbeei_contig7174.3.1 vs. uniprot
Match: A0A7S0R8Z7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R8Z7_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.420e-6
Identity = 49/170 (28.82%), Postives = 67/170 (39.41%), Query Frame = 1 
Query:    4 YLWQRGVALYYLGRHAAAAIEFLRSAAAFEARFDEPATDERVWAAAALLRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGADADRGGDGGDPTARDITGR----RFFGHFYLALWHEAHGR--DGDARDALAAAVATGFPAPPGGERGDDVWLHLPRLHARLRGW 495
            YLWQRG+A YY+GR+   A++F    A      +   T+E +W      R                                 A  +  R G   D  +  I+       F+G  Y+ LWHEAHG   D  AR+A+ AA AT +    G     D    L R+H + RGW
Sbjct:  150 YLWQRGLAHYYVGRYEDGAVQFRSDVAV-----NPNDTEESIWCFICEAR----------YLGVEQARARYLQVGRDSRPVMRAAYECFRTGASPDQISSAISDNGGHSNFYGMLYVGLWHEAHGTLDDPAAREAITAACATPYAKMSG-----DYMADLARVHCQQRGW 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7174.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ95_ECTSI1.760e-1531.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1U8I8_9STRA1.660e-1133.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0R8Z7_9CHLO1.420e-628.82Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7174contigP-wetherbeei_contig7174:51..965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog161934.XP_010674087.1
Model size495
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000136
EggNOG OGs28IPX@1|root,2QR10@2759|Eukaryota,37K9U@33090|Viridiplantae,3G9QV@35493|Streptophyta
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-26_005640.1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186963.3840244-CDS-P-wetherbeei_contig7174:50..3361683186963.3840244-CDS-P-wetherbeei_contig7174:50..336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7174 51..336 +
1683186963.3999863-CDS-P-wetherbeei_contig7174:756..9651683186963.3999863-CDS-P-wetherbeei_contig7174:756..965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7174 757..965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7174.3.1prot_P-wetherbeei_contig7174.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7174 51..965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7174.3.1

>prot_P-wetherbeei_contig7174.3.1 ID=prot_P-wetherbeei_contig7174.3.1|Name=mRNA_P-wetherbeei_contig7174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MYLWQRGVALYYLGRHAAAAIEFLRSAAAFEARFDEPATDERVWAAAALL
RAGADDPPAAAAAALPVPCDAAAAAAVVAATLAAAGADADRGGDGGDPTA
RDITGRRFFGHFYLALWHEAHGRDGDARDALAAAVATGFPAPPGGERGDD
VWLHLPRLHARLRGW
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mRNA from alignment at P-wetherbeei_contig7174:51..965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7174.3.1 ID=mRNA_P-wetherbeei_contig7174.3.1|Name=mRNA_P-wetherbeei_contig7174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig7174:51..965+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCTGTGGCAGCGGGGCGTGGCGCTCTACTACCTCGGCCGCCACGC
CGCCGCCGCCATCGAGTTCCTCCGTTCCGCCGCCGCCTTCGAAGCGCGCT
TTGATGAGCCCGCCACCGACGAGCGCGTCTGGGCGGCCGCCGCGCTGCTC
CGCGCCGGCGCCGACGACCCGCCGGCAGCGGCAGCTGCCGCGCTGCCGGT
GCCTTGTGACGCGGCGGCGGCGGCTGCCGTCGTAGCCGCGACGCTGGCGG
CGGCTGGGGCCGATGCGGACAGGGGCGGTGACGGGGGTGGTGGTGTGCAG
AGCGGTACAGCGGGAACGGCGGGGCCGGGAAGGCCCCCGGAGCTGCGGGA
GACCAACCTGTTGAAGCTGGCGGCGTTGCAGGTGAGGCCAGGTGCCGCTA
TGGACGGATGCTGTTGTTCGCGGCATGTGCGTTGGCTGTTACTGAACTCA
TCGAGATCGCTTTTTTGGCAGGGCTTCTCGCCACACTTTCGTAAGGGTCG
CAATTTTATTAAGGCATCGAACCTTACAACGCTGTCGTTGCATCCGTTGG
ATCCGCCATGCTGCGGGCATCTCTTATTCCTCTTCCTCTGGCCATTTGCC
GCGCCGCCACTGCTACCCGTCGCCATTGCCGCCCGTGATGCGCCCACGCA
GCTGTTTTTGGGCTCGGCGGGGCCCGAGACCGTGCGCGCCGCCATGGGCG
GAGCAGGAGACCCAACGGCGCGGGACATCACGGGCCGCCGCTTCTTTGGC
CACTTCTACCTGGCGCTGTGGCACGAGGCCCACGGCCGCGACGGTGACGC
CCGGGACGCCCTGGCGGCCGCCGTGGCAACGGGCTTCCCGGCACCACCAG
GCGGCGAGAGGGGGGATGATGTGTGGTTGCACCTTCCCCGGCTGCACGCG
CGACTGCGGGGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7174:51..965+

>mRNA_P-wetherbeei_contig7174.3.1 ID=mRNA_P-wetherbeei_contig7174.3.1|Name=mRNA_P-wetherbeei_contig7174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig7174:51..965+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCTGTGGCAGCGGGGCGTGGCGCTCTACTACCTCGGCCGCCACGC
CGCCGCCGCCATCGAGTTCCTCCGTTCCGCCGCCGCCTTCGAAGCGCGCT
TTGATGAGCCCGCCACCGACGAGCGCGTCTGGGCGGCCGCCGCGCTGCTC
CGCGCCGGCGCCGACGACCCGCCGGCAGCGGCAGCTGCCGCGCTGCCGGT
GCCTTGTGACGCGGCGGCGGCGGCTGCCGTCGTAGCCGCGACGCTGGCGG
CGGCTGGGGCCGATGCGGACAGGGGCGGTGACGGGGGAGACCCAACGGCG
CGGGACATCACGGGCCGCCGCTTCTTTGGCCACTTCTACCTGGCGCTGTG
GCACGAGGCCCACGGCCGCGACGGTGACGCCCGGGACGCCCTGGCGGCCG
CCGTGGCAACGGGCTTCCCGGCACCACCAGGCGGCGAGAGGGGGGATGAT
GTGTGGTTGCACCTTCCCCGGCTGCACGCGCGACTGCGGGGCTGG
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