mRNA_P-wetherbeei_contig716.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig716.5.1
Unique NamemRNA_P-wetherbeei_contig716.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig716.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig716contigP-wetherbeei_contig716:6498..8949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1151
Hectar predicted targeting categoryother localisation
Exons7
Cds size1149
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig716.5.1prot_P-wetherbeei_contig716.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig716 6500..8949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186962.5786366-CDS-P-wetherbeei_contig716:6499..67181683186962.5786366-CDS-P-wetherbeei_contig716:6499..6718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig716 6500..6718 -
1683186962.5924387-CDS-P-wetherbeei_contig716:6865..69891683186962.5924387-CDS-P-wetherbeei_contig716:6865..6989Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig716 6866..6989 -
1683186962.6093135-CDS-P-wetherbeei_contig716:7265..75261683186962.6093135-CDS-P-wetherbeei_contig716:7265..7526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig716 7266..7526 -
1683186962.618489-CDS-P-wetherbeei_contig716:7830..79481683186962.618489-CDS-P-wetherbeei_contig716:7830..7948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig716 7831..7948 -
1683186962.6269972-CDS-P-wetherbeei_contig716:8172..83001683186962.6269972-CDS-P-wetherbeei_contig716:8172..8300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig716 8173..8300 -
1683186962.635785-CDS-P-wetherbeei_contig716:8423..84561683186962.635785-CDS-P-wetherbeei_contig716:8423..8456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig716 8424..8456 -
1683186962.6456187-CDS-P-wetherbeei_contig716:8683..89491683186962.6456187-CDS-P-wetherbeei_contig716:8683..8949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig716 8684..8949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig716.5.1

>prot_P-wetherbeei_contig716.5.1 ID=prot_P-wetherbeei_contig716.5.1|Name=mRNA_P-wetherbeei_contig716.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=383bp
KGSKKKSSHLALTPSFPVQFGTSRPLPLERLSLPKRRPPCTMSRSLLALC
GTLALTAMRLVEAQPVACLPGGTYYFGGPARSDAVEYLWSYKDYFNGYPR
WYLQLQLVNTQLWNTNPYITRVLFERLNGASWVPMYSFLEDYGYGVDPTY
DGQTAQGVVTDPSTSITVRLHFVGDGNGCADGYTQAVQMGHYKFISGASD
YNRIASGGIPGTTPAWLHPYSTPVSQCTAPGTWSGLRDAPPGAWLQSIKA
TKMCDCHWRIDVQYNPSYSLMVNNPFIDYISIKVAEGSSQRIRLLVHQPG
KSLYSVITPKFNCNLNYIKINGIVYFDEFDGAVGYITRTNSCFAVPAVVS
NVCLVSGVAYGGGALPTSCAGLGSESGSYAYSG
back to top

mRNA from alignment at P-wetherbeei_contig716:6498..8949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig716.5.1 ID=mRNA_P-wetherbeei_contig716.5.1|Name=mRNA_P-wetherbeei_contig716.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2452bp|location=Sequence derived from alignment at P-wetherbeei_contig716:6498..8949- (Phaeothamnion wetherbeei SAG_119_79)
AAAGGATCCAAAAAAAAATCCAGTCACCTCGCTCTCACCCCGTCATTCCC
AGTCCAATTCGGTACGAGTCGACCTCTTCCACTTGAACGCCTTTCCCTGC
CAAAGCGAAGACCCCCTTGCACAATGAGTCGAAGCTTGCTCGCGCTCTGC
GGCACTCTGGCGCTGACCGCGATGCGGCTAGTGGAGGCCCAGCCTGTTGC
ATGCTTGCCAGGAGGCACGTACTACTTTGGTGGCCCAGCGCGCTCGGATG
CTGTTGAATATCTCTGGTAAAAACATGGTCTAGTCTCTCGCGGCTCGAAG
GCCGACCGATTACATTCATCCTTTCTGCTCTGCTCTCTCGCGCCCGTCCA
ACCAGCGTAGGCCGTCAATTAAAGGCCTTTGTCAACATCTGTCGCAAAAG
CGCTTTCTCCGTTCCTCGTCCCTTCTTCCTCCTTTGACGAAATATGTCTC
CTCCTTCGCCCTCTCGTTTGCCTTCCCATCTGCCTCTGGGTAGGTCTTAC
AAAGACTATTTTAATGGTTATCCCCGGTAAGCGTCTCTCTGGACCCTTCT
GTATATGGAAAAGGCATTCCCTTCTTTGCCCGCCGAAGTTCGTTGACCTT
CGGTCCCGTCGCATCGCTCCTCCGCCCGTCCCCCCGGAGCATGCTGCAGA
TGGTACCTTCAGCTGCAACTCGTCAACACGCAACTGTGGAACACCAATCC
CTACATCACGCGCGTCCTTTTCGAGCGGCTGAACGGCGCATCGTGGGTGC
CCATGTACTCGTTTCTCGAAGATTACGGCAAGTCTTTTTTCCCCACGGCT
CGCTGCTTTGGCTGGTTGTTTTGTTCGGTTGTCTGGAAATCTCGCCGGGC
TGCAGTGCTTGACAGCTGCTTCTGCCCGCTACCGCCTTCCTCTCGATTTC
GGTACAAGTGCTTCTTTACCTTGACGTTTCCCGCTCTCTGCCCCTTTGCC
TTTACCCTTTCCCCTTTCTTTTCTTCTTCGTTAATCACGAACTTTTGAAA
GGTTATGGCGTGGACCCGACATACGACGGTCAGACAGCGCAGGGCGTCGT
GACCGACCCGTCCACCTCCATCACCGTCCGACTCCACTTCGTCGGCGACG
GCAACGGCTGCGCGGACGGGTAAGCTGCTCTTTTTATTTCCCCATGAGGC
AGCAAGAATATGGAGCAGACAGCAAAGGAGTACTTCCAATATCAGCTCTC
TTTTGTTTATCCCACTAGACAGCATCGCACCTAAGTACTTACAGGCGCTC
AACAAGCAACAACAAAGCCCGGGAGCTGGCCACGTTGATCTTCCCTTCGC
CACGCTCTTTTTGTACTGACTGCCTGGTTTCCTCTCTCCCCCCTTTTTCC
TGCCGCCCTTCCTCCGTTCCCTTTCATTGTCCCCTCTCCGCCCCACGCAC
ACCACAAACCGCGCAATTCGCAGCTACACGCAGGCGGTGCAAATGGGCCA
CTACAAATTCATCAGCGGCGCCAGCGACTACAACCGCATTGCCAGCGGTG
GCATCCCCGGCACCACCCCGGCCTGGCTGCACCCGTACTCCACGCCGGTC
AGCCAGTGCACGGCGCCCGGCACGTGGTCGGGGCTTCGGGACGCACCGCC
GGGGGCGTGGCTGCAGTCCATTAAGGCCACCAAGATGTGCGACTGCCACT
GGCGCATCGACGTGCAGTACAACCCCAGCTACAGGTCAGTGAAGAGGCGG
TTCTTATTTGCATTCGCTTTCCTTTTGCTTCCTTGTTTTACCCTGAGGCT
GGTTCTGTATCCGTCGCGGAATTGGGAGTTGGTTATTCTATTCTACCGCG
CTTCACGCATCAATACCTCTATCCGTTTACCTTTTCCGTTTGGCCGTCGT
CGGGCCGCATTTAATACCCCCTATTTTGACACATCGCTGGAACCCTTTTC
TTTCAAACTTGGTACCCCATGCCTGCTTCGGGGTGCCCTTGCTCTCTCTA
CCGCGCGCAGCCTGATGGTGAACAACCCGTTCATCGACTACATCTCCATC
AAGGTGGCGGAGGGCAGCAGCCAGCGCATCCGCCTGCTCGTGCACCAGCC
GGGAAAGTCGCTCTACAGCGTCATCACCCCCAAGGTTCGTCAGCGAGAGG
AACGAGAAGGATGAAACATAGACCGCTTTCAAAGATTGCTTTTATCCTGA
AAGGACTGACGGGTTCTGCCGCTGGCTCTCTTCTGCCGCCGCCTGCCGCT
TGTTGCCATTCTAACCTCGCAAAACATGCAGTTCAACTGCAACCTCAACT
ATATCAAGATCAATGGTATCGTCTACTTTGACGAGTTCGACGGCGCCGTC
GGCTACATCACGCGCACCAATTCATGCTTCGCCGTGCCGGCTGTCGTCAG
CAACGTCTGCCTCGTCAGCGGCGTCGCGTACGGCGGCGGCGCGCTGCCCA
CCAGCTGCGCCGGCCTCGGCTCCGAGTCCGGCTCCTATGCCTACTCGGGC
GG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig716:6498..8949-

>mRNA_P-wetherbeei_contig716.5.1 ID=mRNA_P-wetherbeei_contig716.5.1|Name=mRNA_P-wetherbeei_contig716.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1149bp|location=Sequence derived from alignment at P-wetherbeei_contig716:6498..8949- (Phaeothamnion wetherbeei SAG_119_79)
AAAGGATCCAAAAAAAAATCCAGTCACCTCGCTCTCACCCCGTCATTCCC
AGTCCAATTCGGTACGAGTCGACCTCTTCCACTTGAACGCCTTTCCCTGC
CAAAGCGAAGACCCCCTTGCACAATGAGTCGAAGCTTGCTCGCGCTCTGC
GGCACTCTGGCGCTGACCGCGATGCGGCTAGTGGAGGCCCAGCCTGTTGC
ATGCTTGCCAGGAGGCACGTACTACTTTGGTGGCCCAGCGCGCTCGGATG
CTGTTGAATATCTCTGGTCTTACAAAGACTATTTTAATGGTTATCCCCGA
TGGTACCTTCAGCTGCAACTCGTCAACACGCAACTGTGGAACACCAATCC
CTACATCACGCGCGTCCTTTTCGAGCGGCTGAACGGCGCATCGTGGGTGC
CCATGTACTCGTTTCTCGAAGATTACGGTTATGGCGTGGACCCGACATAC
GACGGTCAGACAGCGCAGGGCGTCGTGACCGACCCGTCCACCTCCATCAC
CGTCCGACTCCACTTCGTCGGCGACGGCAACGGCTGCGCGGACGGCTACA
CGCAGGCGGTGCAAATGGGCCACTACAAATTCATCAGCGGCGCCAGCGAC
TACAACCGCATTGCCAGCGGTGGCATCCCCGGCACCACCCCGGCCTGGCT
GCACCCGTACTCCACGCCGGTCAGCCAGTGCACGGCGCCCGGCACGTGGT
CGGGGCTTCGGGACGCACCGCCGGGGGCGTGGCTGCAGTCCATTAAGGCC
ACCAAGATGTGCGACTGCCACTGGCGCATCGACGTGCAGTACAACCCCAG
CTACAGCCTGATGGTGAACAACCCGTTCATCGACTACATCTCCATCAAGG
TGGCGGAGGGCAGCAGCCAGCGCATCCGCCTGCTCGTGCACCAGCCGGGA
AAGTCGCTCTACAGCGTCATCACCCCCAAGTTCAACTGCAACCTCAACTA
TATCAAGATCAATGGTATCGTCTACTTTGACGAGTTCGACGGCGCCGTCG
GCTACATCACGCGCACCAATTCATGCTTCGCCGTGCCGGCTGTCGTCAGC
AACGTCTGCCTCGTCAGCGGCGTCGCGTACGGCGGCGGCGCGCTGCCCAC
CAGCTGCGCCGGCCTCGGCTCCGAGTCCGGCTCCTATGCCTACTCGGGC
back to top