mRNA_P-wetherbeei_contig7157.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7157.2.1
Unique NamemRNA_P-wetherbeei_contig7157.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: A0A446IM63_TRITD (Histone H4 n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446IM63_TRITD)

HSP 1 Score: 201 bits (510), Expect = 6.170e-62
Identity = 105/121 (86.78%), Postives = 111/121 (91.74%), Query Frame = 3 
Query:   54 LQSHPLTNTSHEKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            L  HPL   +  K +  AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVT+MDVV+ALKRQGRTLYGFGG
Sbjct:   38 LDLHPLA--ARTKERASAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 156
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: UPI001D1A5964 (histone H3.2-like n=4 Tax=Eukaryota TaxID=2759 RepID=UPI001D1A5964)

HSP 1 Score: 203 bits (516), Expect = 7.000e-62
Identity = 102/110 (92.73%), Postives = 109/110 (99.09%), Query Frame = 3 
Query:   87 EKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            ++HQ+ AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVT+MDVV+ALKRQGRTLYGFGG
Sbjct:  116 KRHQSSAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 225
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: A0A067GCA2_CITSI (Histone H4 (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067GCA2_CITSI)

HSP 1 Score: 199 bits (507), Expect = 7.780e-62
Identity = 102/116 (87.93%), Postives = 110/116 (94.83%), Query Frame = 3 
Query:   69 LTNTSHEKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            L  +S  ++Q + MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVT+MDVV+ALKRQGRTLYGFGG
Sbjct:   16 LIYSSDTQYQRKIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: A0A7S3P4Q1_9STRA (Histone H4 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4Q1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 8.230e-62
Identity = 103/119 (86.55%), Postives = 108/119 (90.76%), Query Frame = 3 
Query:   60 SHPLTNTSHEKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            S P T    +   +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVT+MDVV+ALKRQG+TLYGFGG
Sbjct:    4 SKPFTFNKQQNQNSFIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 122
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: UPI001CDB5CDF (histone H4-like isoform X1 n=1 Tax=Gambusia affinis TaxID=33528 RepID=UPI001CDB5CDF)

HSP 1 Score: 199 bits (506), Expect = 9.680e-62
Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = 3 
Query:   87 EKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            E H++  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVT+MDVV+ALKRQGRTLYGFGG
Sbjct:   18 ENHRSVTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 127
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: A0A7S1VGM8_9STRA (Histone H4 n=7 Tax=Stramenopiles TaxID=33634 RepID=A0A7S1VGM8_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.000e-61
Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 3 
Query:   45 LSCLQSHPLTNTSHEKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            L  L S+P TNT +  H+   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVT+MDVV+ALKR GRTLYGFGG
Sbjct:    7 LFVLISYP-TNTVYS-HKTAIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRSGRTLYGFGG 128
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: A0A453MXZ5_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MXZ5_AEGTS)

HSP 1 Score: 199 bits (505), Expect = 1.510e-61
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 3 
Query:   54 LQSHPLTNTSHEKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            ++S+ L  +S E      MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVT+MDVV+ALKRQGRTLYGFGG
Sbjct:   10 IRSNLLARSSKEAVSPSTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: A0A453MYX0_AEGTS (Histone H4 n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MYX0_AEGTS)

HSP 1 Score: 199 bits (505), Expect = 1.670e-61
Identity = 101/119 (84.87%), Postives = 108/119 (90.76%), Query Frame = 3 
Query:   60 SHPLTNTSHEKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            +H     S  + +   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVT+MDVV+ALKRQGRTLYGFGG
Sbjct:   15 THTAAKRSSPEREESTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 133
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: UPI001F0D1248 (histone H4-like n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F0D1248)

HSP 1 Score: 199 bits (506), Expect = 1.680e-61
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 3 
Query:   63 HPLTNTSHEKHQNQAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            H + N   +K +N  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVT+MDVV+ALKRQGRTLYGFGG
Sbjct:   27 HIVFNFFFKKKKNLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 144
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BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Match: A0A7S4HYH3_9STRA (Histone H4 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4HYH3_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.710e-61
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 3 
Query:   60 SHPLTNTSHEK---HQNQ-AMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYGFGG 416
            ++PL +T+ E+   + NQ  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVT+MDVV+ALKRQG+TLYGFGG
Sbjct:    1 TNPLDDTNSERKTLNTNQNIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7157.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A446IM63_TRITD6.170e-6286.78Histone H4 n=1 Tax=Triticum turgidum subsp. durum ... [more]
UPI001D1A59647.000e-6292.73histone H3.2-like n=4 Tax=Eukaryota TaxID=2759 Rep... [more]
A0A067GCA2_CITSI7.780e-6287.93Histone H4 (Fragment) n=1 Tax=Citrus sinensis TaxI... [more]
A0A7S3P4Q1_9STRA8.230e-6286.55Histone H4 n=1 Tax=Amphora coffeiformis TaxID=2655... [more]
UPI001CDB5CDF9.680e-6291.82histone H4-like isoform X1 n=1 Tax=Gambusia affini... [more]
A0A7S1VGM8_9STRA1.000e-6187.10Histone H4 n=7 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A453MXZ5_AEGTS1.510e-6185.12Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A453MYX0_AEGTS1.670e-6184.87Histone H4 n=4 Tax=Aegilops tauschii subsp. strang... [more]
UPI001F0D12481.680e-6187.29histone H4-like n=1 Tax=Dermatophagoides farinae T... [more]
A0A7S4HYH3_9STRA1.710e-6186.18Histone H4 n=4 Tax=Bacillariophyta TaxID=2836 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7157contigP-wetherbeei_contig7157:2196..2978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863623.1
PFAMsCENP-T_C
Model size783
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.96e-63
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size312
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186962.2731996-UTR-P-wetherbeei_contig7157:2195..23021683186962.2731996-UTR-P-wetherbeei_contig7157:2195..2302Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7157 2196..2302 +
1683186962.2924833-UTR-P-wetherbeei_contig7157:2614..29781683186962.2924833-UTR-P-wetherbeei_contig7157:2614..2978Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7157 2615..2978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186962.283597-CDS-P-wetherbeei_contig7157:2302..26141683186962.283597-CDS-P-wetherbeei_contig7157:2302..2614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7157 2303..2614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7157.2.1prot_P-wetherbeei_contig7157.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7157 2303..2614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7157.2.1

>prot_P-wetherbeei_contig7157.2.1 ID=prot_P-wetherbeei_contig7157.2.1|Name=mRNA_P-wetherbeei_contig7157.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVFALKRQGRTLYG
FGG*
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mRNA from alignment at P-wetherbeei_contig7157:2196..2978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7157.2.1 ID=mRNA_P-wetherbeei_contig7157.2.1|Name=mRNA_P-wetherbeei_contig7157.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig7157:2196..2978+ (Phaeothamnion wetherbeei SAG_119_79)
GCGAGATTCATCGGCCAATCAGATGCTGTCAGAAGAACTTGGTACTCTCT
TGTCTTCAATCCCATCCGCTTACAAACACTTCTCACGAGAAACACCAAAA
CCAAGCAATGTCTGGACGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCG
GTGCGAAGCGTCACCGCAAAGTGCTTCGGGATAACATCCAGGGCATCACC
AAGCCCGCAATCCGGCGCCTCGCCCGCCGCGGCGGCGTGAAGCGCATCAG
CGGCCTCATCTACGAGGAGACGCGCGGCGTCCTCAAGGTCTTCCTCGAGA
ACGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCCGCCGCAAGACG
GTTACCTCGATGGACGTCGTCTTCGCCCTCAAGCGCCAGGGCCGCACCCT
GTACGGCTTCGGCGGCTAAGCAAAGCAAGAGAGGAAATCCGAGCGCGTCG
CGGGCGTTGCGAGGGATTCGAGCGAGCGAACGCTGTACCTGGGCTCCACT
CGGTTCCATTCATTCATCAATACTTCGTCGACGTGCTGCGGGCGCGTGTG
CGAGACGAAATACCGGTGCTTTTTAGCACCACCAATCTGCGAGAAATTTT
AGAAGATGAAAGGGACTTCCTGTGTTTTAGAAGTGGTTTCGACAATGAAG
GAGTAAGTCCAACTCATTTGGGTCTCGAGCAACCTTGTGCAGGAGCCTGT
GGTTCTTTATTGGATTTCATGGGGTCCTGGAGAAGGCGACTGGTGTCCGA
TGGGTGTTTTTCGGCAATTGTAAATGAAGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7157:2196..2978+

>mRNA_P-wetherbeei_contig7157.2.1 ID=mRNA_P-wetherbeei_contig7157.2.1|Name=mRNA_P-wetherbeei_contig7157.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig7157:2196..2978+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGGACGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGTGCGAA
GCGTCACCGCAAAGTGCTTCGGGATAACATCCAGGGCATCACCAAGCCCG
CAATCCGGCGCCTCGCCCGCCGCGGCGGCGTGAAGCGCATCAGCGGCCTC
ATCTACGAGGAGACGCGCGGCGTCCTCAAGGTCTTCCTCGAGAACGTCAT
CCGCGACTCGGTCACCTACACTGAGCACGCCCGCCGCAAGACGGTTACCT
CGATGGACGTCGTCTTCGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGC
TTCGGCGGCTAA
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