mRNA_P-wetherbeei_contig7155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: UPI0016055838 (uncharacterized protein LOC118438167 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI0016055838) HSP 1 Score: 71.6 bits (174), Expect = 3.720e-10 Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQ 679
++L A+EA R E LG Q +PT+IH DN +A+ L +S+HI +RYH+TREL + G +A++ V ++Q+ADGLT+ +++
Sbjct: 354 ISLASGAREAVWLRRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLTKPLLK 443
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A226DUK4_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DUK4_FOLCA) HSP 1 Score: 71.6 bits (174), Expect = 4.200e-10 Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQ 679
++L A+EA R E LG Q +PT+IH DN +A+ L +S+HI +RYH+TREL + G +A++ V ++Q+ADGLT+ +++
Sbjct: 1249 ISLASGAREAVWLRRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLTKPLLK 1338
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A226DW10_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DW10_FOLCA) HSP 1 Score: 67.8 bits (164), Expect = 7.810e-9 Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query: 410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQ 679
++L A+EA R E LG Q +P +IH DN +A+ L +S+HI +RYH+TREL + G +A++ V ++Q+ADGL++ +++
Sbjct: 1249 ISLASGAREAVWLRRFLEELGFPQESPKIIHVDNQSAIKLVKNPEMHSRSKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLSKPLLK 1338
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A182GY63_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GY63_AEDAL) HSP 1 Score: 62.4 bits (150), Expect = 1.140e-8 Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 2
Query: 410 MTLFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLRALRA 703
+ L AAQEA R L + L +Q T ++EDN + L +S+HI IRYH+TR++ A G+I ++ + D +AD LT+ + ER+R A
Sbjct: 6 VALSGAAQEAVWLRGLLDELDEKQVQATTVYEDNRSCLDFVALDHQKKRSKHIDIRYHYTRDVCATGVIDLQYCTSEDMIADILTKPLGAERVRKFAA 103
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A8H6P076_9EURO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6P076_9EURO) HSP 1 Score: 66.2 bits (160), Expect = 1.950e-8 Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 2
Query: 368 GCSIRWRDRR*RASMT---------LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQE 682
G I W+ R+ T +A++EA R + ++LG+ + ++ DN A+ L A T +S+HI IR+H+TR+L GIIAVKQ+ + +ADG+T+ + E
Sbjct: 528 GAPISWQSRKQTCVATSSNEAEYIAASEASREAWWIRAVLKNLGINHGSAVPLYMDNKGAIDLTTALNGTKRSKHIDIRFHYTRDLVKQGIIAVKQIPTKEMVADGMTKPLAAE 641
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A8H6UGS1_9EURO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6UGS1_9EURO) HSP 1 Score: 65.5 bits (158), Expect = 3.090e-8 Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 2
Query: 368 GCSIRWRDRR*RASMT---------LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQE 682
G I W+ R+ T +A++EA R + + LG+ + ++ DN A+ L A T +S+HI IR+H+TR+L GIIAVKQ+ + +ADG+T+ + E
Sbjct: 386 GAPISWQSRKQTCVATSSNEAEYIAASEASREAWWIRAVLKDLGINHGSAVPLYMDNKGAIDLTTALNGTKRSKHIDIRFHYTRDLVKQGIIAVKQIPTKEMVADGMTKPLATE 499
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A0B1NZC9_UNCNE (Uncharacterized protein n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1NZC9_UNCNE) HSP 1 Score: 60.5 bits (145), Expect = 8.600e-8 Identity = 39/115 (33.91%), Postives = 54/115 (46.96%), Query Frame = 2
Query: 368 GCSIRWRDRR*RASMTL---------FDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQER 685
GC + WR + TL F+A +E R L T P I EDNT A+ A G T RH+RI YH++ E + G + V+Q+S A ADG T+ + E+
Sbjct: 3 GCPVVWRSKLQSTVSTLTCEAENTAIFEAVKECAWIRNFLSELDQMPTGPIPILEDNTGAIKWAKDDGMTSGRRHVRIEYHYSVEESRNGNVDVRQISSAQNAADGFTKPLGSEQ 117
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A182GAZ5_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GAZ5_AEDAL) HSP 1 Score: 62.4 bits (150), Expect = 1.110e-7 Identity = 40/121 (33.06%), Postives = 61/121 (50.41%), Query Frame = 2
Query: 368 GCSIRWRDRR*RASMT---------LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLRALRA 703
G ++ W R+ T L AAQEA R L + L +Q T ++EDN + L +S+HI IRYH+TR++ A G+I ++ + D +AD LT+ + ER+R A
Sbjct: 114 GATVSWISRKQSCVATSTMEAEYVALSGAAQEAVWLRGLLDELDEKQVQATTVYEDNRSCLDFVALDHQKKRSKHIDIRYHYTRDVCATGVIDLQYCTSEDMIADILTKPLGAERVRKFAA 234
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A2I0X174_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X174_9ASPA) HSP 1 Score: 63.9 bits (154), Expect = 1.340e-7 Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 2
Query: 416 LFDAAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLRALR 700
L A E R L E L L QT+PTVIH DNT+A+ALA +++HI I +HF R+ +G I+V +S DQ+AD T+ + R ALR
Sbjct: 1114 LSSAVSEILWLRRLVEELHLPQTSPTVIHCDNTSAIALAHNPVFHARTKHIEIDHHFIRDHIDSGHISVTHLSSIDQIADIFTKPLSATRFLALR 1208
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Match: A0A5M8PMT3_9LECA (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A5M8PMT3_9LECA) HSP 1 Score: 63.5 bits (153), Expect = 1.670e-7 Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 2
Query: 425 AAQEAEQPRTLPEHLGLEQTAPTVIHEDNTAALALAIAAGHTHQSRHIRIRYHFTRELAAAGIIAVKQVSRADQLADGLTENVVQERLR 691
+A EA R L + LG+ APT+IH DN L L+ + +S+HI +RYH+TR+L A G+I +K + A+ ADGL + ++ + +
Sbjct: 799 SATEAVWLRGLLDELGIPCNAPTMIHADNQGVLTLSKNPKYHKKSKHIHVRYHYTRKLIATGVIELKWLLTAEIKADGLIKALLLSKFK 887 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7155.1.1 >prot_P-wetherbeei_contig7155.1.1 ID=prot_P-wetherbeei_contig7155.1.1|Name=mRNA_P-wetherbeei_contig7155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp MPTLGLLYYRQPTAATATATPATMTAAASLELVGYRDANLAGCLDSGRSMback to top mRNA from alignment at P-wetherbeei_contig7155:2259..3179+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7155.1.1 ID=mRNA_P-wetherbeei_contig7155.1.1|Name=mRNA_P-wetherbeei_contig7155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig7155:2259..3179+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7155:2259..3179+ >mRNA_P-wetherbeei_contig7155.1.1 ID=mRNA_P-wetherbeei_contig7155.1.1|Name=mRNA_P-wetherbeei_contig7155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig7155:2259..3179+ (Phaeothamnion wetherbeei SAG_119_79)back to top |