mRNA_P-wetherbeei_contig715.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig715.6.1
Unique NamemRNA_P-wetherbeei_contig715.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig715.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig715contigP-wetherbeei_contig715:6489..8240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.6971948-UTR-P-wetherbeei_contig715:6488..65121683186961.6971948-UTR-P-wetherbeei_contig715:6488..6512Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig715 6489..6512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.7140608-CDS-P-wetherbeei_contig715:6512..65741683186961.7140608-CDS-P-wetherbeei_contig715:6512..6574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig715 6513..6574 +
1683186961.725939-CDS-P-wetherbeei_contig715:8086..82401683186961.725939-CDS-P-wetherbeei_contig715:8086..8240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig715 8087..8240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig715.6.1prot_P-wetherbeei_contig715.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig715 6513..8240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig715.6.1

>prot_P-wetherbeei_contig715.6.1 ID=prot_P-wetherbeei_contig715.6.1|Name=mRNA_P-wetherbeei_contig715.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MGIAPLVLEGRDGEPPKAGAAENGGAGDGGGNAAAIAAASAAGTAAGSAA
AAAAAAAACESAAARANAAALA
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mRNA from alignment at P-wetherbeei_contig715:6489..8240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig715.6.1 ID=mRNA_P-wetherbeei_contig715.6.1|Name=mRNA_P-wetherbeei_contig715.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1752bp|location=Sequence derived from alignment at P-wetherbeei_contig715:6489..8240+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGCCGTGCCTCGCGGCCGCGGCATGGGCATCGCGCCACTGGTGCTGGA
AGGCCGCGACGGCGAGCCGCCCAAGGCCGGGGCGGCGTCTGCGGCGCCGG
GCGCGCCGCCGACGCTCTTCAGCCTACGATACAACGCGCTGCACACGGAC
ATGGTGCTGGGGTTCGTGGAGCGGCGGGTCCGCGGTCTCAAGTTTATGGG
GCTGAACCGCGCGCGGGCCGAGGCGGAGGCCGCGGCGGCGGCGGGCGGCG
GCGGCGGCGGCGGCGGCGCGCTGGCGCTGGCGGGCCAACTCTGGGAGGCG
ATGCGCAACGGCTGCATGTTCCCCATGGCGCGCTCGACCGAGGTGACCGT
GCGCGGCATCGATGTCGAGGCGCTGCAGCGGCACGCCATCGCGTCGGCGG
GCGCGTCGGCGGCGCTGCCCGGCGCGGCGGAAGCATTCGCGCGCGACGTG
CTCAAGCCGCTACCGTTCAAGCCGCTGGCACTGCGCGTACGTTACTTGAT
TGAATCAGCTGCGGTTGCAGGCACCGGTGATGGCCCGACCGCGGAGGCTG
CCGCCGACGCCGACGCGGCCACAGCTGAAGCGGGCGGGGAGGCCGCTGCG
GCGGCAGCGGCGGCGGCGGCGGAAGGAGAAGGAGAAGAGGGTGACCACAG
CATCGACGATGATGATGCGGAGGAGGAGGAAGAAGACGAGGAGGAGGAGG
AAGATGGCAACGACGATGGCGGCGAGGCGGCAGTTGCGGCGCGGCGGGCG
CCGGCAGCGATGCGGTTGAACGCCGCGGGCGGCAGCATGGGCCTCGTTGA
CGGCGGCGGCGGCGGCGGCGGCAAAGCGGGCAGCGGTGGCGCCGGCGCGG
CTGCTGCGCCGCCGCCGCGGCCGCCGCCCAAGACGCCGAAGCGTAAGGGC
GCGTCGCCAAAGCCATCGAGCCGCACCGTGGACGAACGGCTGTCGGGGCT
GTCGGCGGAGCTGACGCACACGCGGGTGGTAGTGGTGGACCTGGGCAACG
CCTGCTGGACGCACAAGCACTTCAGCGAGGACATCCAGACGCGGCAGTAC
CGCTCGCCCGAGGTCATTGTGGGTGTGCGGTACGAGACGTCGGCGGACAT
GTGGTCGCTGGCGTGCATCGTCTTCGAGCTGCTGACGGGTGACCTGCTCT
TCGACCCGCGCTCCGGCGAGGACTACGATCGGGACGAAGACCACCTGGCA
CAGTGCATGGAGCTGCTGGGGCGGTTCCCCCCGCGGCTGTCAACGGAGGG
CAAGTACAGCCGGCAGTACTTCAACCGGCGCGGCGAGCTGCGGCACATCA
GCAACCTGAAGTTTTGGGGCCTCGAAGACGTGCTCGTGGACAAGTACCAC
TTTCCGCGCCGCGACGCGCGCGAGGCGGCGAGCTTCATGCTGGCGATGCT
CGAGATGGACCCAGCGCGGCGCGCCACCGCCTGCGAAATGCTGGCGCACC
CGTGGCTCGCCGACGTGCCCGAAGTGGCGGCGGGGGCTTCCGGGCAATTG
GAGGCGGCAACTGGGGCAGCATCGGTGGCGGTGATGGCGGAAATGGGGGA
GTTTACCTTTGCCGGTGAGGACAGCGAGGGCGTTGGCGAGCGGCTCAGCG
AGAACGGCGGCGCCGGTGACGGCGGCGGCAACGCAGCCGCCATCGCCGCG
GCGTCGGCCGCTGGCACCGCGGCAGGTTCCGCCGCCGCCGCCGCTGCCGC
TGCCGCGGCTTGTGAGTCGGCGGCGGCCCGGGCGAACGCTGCCGCGCTGG
CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig715:6489..8240+

>mRNA_P-wetherbeei_contig715.6.1 ID=mRNA_P-wetherbeei_contig715.6.1|Name=mRNA_P-wetherbeei_contig715.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig715:6489..8240+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATCGCGCCACTGGTGCTGGAAGGCCGCGACGGCGAGCCGCCCAA
GGCCGGGGCGGCCGAGAACGGCGGCGCCGGTGACGGCGGCGGCAACGCAG
CCGCCATCGCCGCGGCGTCGGCCGCTGGCACCGCGGCAGGTTCCGCCGCC
GCCGCCGCTGCCGCTGCCGCGGCTTGTGAGTCGGCGGCGGCCCGGGCGAA
CGCTGCCGCGCTGGCG
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