mRNA_P-wetherbeei_contig7142.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7142.3.1
Unique NamemRNA_P-wetherbeei_contig7142.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A6H5JR94_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR94_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.930e-20
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 ETKLVFSLRAIKQRLDNEANGK-TFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAVAR 333
            + +L+  L+ +K+++D E+ GK +FSFTKIILK GTI K+L RI  VFQS DH N G ++KD  +  +   H  L +       + C + H+  R D +GLREF VMLAV R
Sbjct:   32 QRRLIEGLQDLKRQMDEESGGKESFSFTKIILKLGTIEKILHRINAVFQSVDHGNKGHVTKDELKEGLRRAHVDLGDEWEDTNIDDC-LQHLHGRDDKVGLREFVVMLAVGR 142          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: D8LMR6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR6_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.520e-18
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 ETKLVFSLRAIKQRLDNEANGK-TFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAVAR 333
            + +L+  L+ +K+++  E+  K +FSFTKIILK GTI K+L+RI  VF+S DH N G ++KD  +  +   H  L +       + C + H++ R D +GLREF VMLAV R
Sbjct:   32 QRRLIEGLQDLKRQMAEESGEKESFSFTKIILKLGTIEKILQRINAVFKSVDHGNKGHVTKDELKEGLHRAHVDLGDEWEDTNIDDC-LQHLQGRDDKVGLREFVVMLAVGR 142          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A7S2UXD7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXD7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.960e-13
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 ETKLVFSLRAIKQRLDNEANGKTFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAVA 330
            + K+V +LR  K++L+     KT  F +I+LKFGTI+KV+  ++ VF  FD + DG +    F+ A+  +   LS  ++Q +F+V D+T    +   LGL+EF V+LA++
Sbjct:   46 DRKIVQALRRKKEQLERAGRLKT-KFDRILLKFGTINKVMDHLQQVFNQFDDNCDGFMDMGEFQRALGEVDANLSLDELQEIFQVSDLT----KEHKLGLKEFIVVLAIS 150          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A7S3UWH3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWH3_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 3.380e-13
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 ETKLVFSLRAIKQRLDNEANGK-TFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAVA 330
            E K++ +LR  ++ L   A GK    F +I+LKFGTI KV++ +R VF  FD + +  + +D F  A + +  +LS  ++  LF+V D+TH      TLG++EF VML V+
Sbjct:   42 ERKIIQALRRQREYLG--AQGKLNMKFDRIMLKFGTISKVMKHLRQVFAQFDTNGNMVLDQDEFLKAAQEMQVELSREELAELFDVSDLTH----EHTLGMKEFVVMLCVS 146          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A835YSL5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.530e-12
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   19 SLRAIKQRLDN-EAN-GKTFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAVAR 333
            +LR  K  LD+ +A+    FSF KI+LK GTI +VLRR++ V+ S D D DG +S D F+ A + +   L    V  +F +C +    E    L  R+F VMLAVAR
Sbjct:   42 ALRDRKWELDHADADLASAFSFAKIVLKLGTIKRVLRRVQSVYTSCDADCDGKVSCDDFKRACQDMRLGLEAGAVDKVFAICGV----ENSAQLSFRDFTVMLAVAR 144          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A836CAN3_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.900e-10
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   70 FSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAVAR 333
            FSFTKI+LK GTI +VL  + + F     D DG +S+     A E     + EA + N+F  C+         +LGLR F V+LAVAR
Sbjct:   60 FSFTKILLKMGTIKRVLAHVELAFAELAQDEDGRVSRQQLLQACEDAQVPMDEAILDNVFAACEAAD----GGSLGLRGFVVLLAVAR 143          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A7S3XZL5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZL5_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.670e-8
Identity = 37/110 (33.64%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    4 TKLVFSLRA-IKQRLDNEANGKT-FSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAV 327
            +K+  +L+A +K+  + +  G+   +FT+I+LKF  I KV++R++ VF  +D D DG I+ +  + A+  L  KL+  ++++LF + D+        TL L+EF V L V
Sbjct:   22 SKIKTALKAKLKETEELKKQGRDPINFTRILLKFQIIRKVIKRVQRVFTEYDKDKDGHITFEELQDALVKLQVKLTREEIRDLFNLSDLMGYH----TLNLKEFLVALTV 127          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: D8LL80_ECTSI (Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL80_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.260e-6
Identity = 34/109 (31.19%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 ETKLVFSLRAIKQRLDNEANGKTFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAV 327
            ++KL+ +L++ K+    +   +  SFT+++LK GT+   +  IR VFQ  D D  G I       AM+ L   LSE +++ LF++ D    ++    L +++F V+LA+
Sbjct:   21 QSKLMVALQSKKEEYRTKFKQE-MSFTRVLLKLGTVRTFMNDIRRVFQERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQ----LTMKQFLVVLAM 124          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A5J5C0K2_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C0K2_9ASTE)

HSP 1 Score: 54.3 bits (129), Expect = 2.630e-6
Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   58 NGKTFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAV 327
            N    S   II++F    + L+ IR VF+ +D D++G+I  D  R  +E+L   L+E ++ +LF  CD+   R     +  +EF V+L +
Sbjct:   55 NNSFRSINGIIMRFPQFKEGLKNIRGVFERYDEDSNGTIDSDELRSCLENLQLHLTEKEIDDLFNSCDIDGSRG----IQFKEFIVLLCL 140          
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Match: A0A8B8JUH6_ABRPR (probable calcium-binding protein CML22 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JUH6_ABRPR)

HSP 1 Score: 52.4 bits (124), Expect = 9.870e-6
Identity = 33/109 (30.28%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 ETKLVFSLRAIKQRLDNEANGKTFSFTKIILKFGTIHKVLRRIRVVFQSFDHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGLREFYVMLAV 327
            E KL   +  IK+    E   K  S   I + F T  + L+ +RV+F+ +D +++GSI  +  +  +EHL   L E + QN+F+ CD+    +    +   EF V+L +
Sbjct:   21 EEKLERKIAEIKRYKFGERRMK--SIDNIFMMFPTFEEKLKSLRVMFEKYDVNSNGSIEPNELKRLLEHLQLHLPEDESQNIFKYCDI----DGSKGIQFNEFIVLLCL 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7142.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JR94_9PHAE6.930e-2044.64EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LMR6_ECTSI5.520e-1841.96EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2UXD7_9STRA2.960e-1337.27Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3UWH3_HETAK3.380e-1338.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YSL5_9STRA3.530e-1242.06EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CAN3_9STRA6.900e-1040.91EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3XZL5_HETAK1.670e-833.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LL80_ECTSI1.260e-631.19Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A5J5C0K2_9ASTE2.630e-632.22Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A8B8JUH6_ABRPR9.870e-630.28probable calcium-binding protein CML22 n=1 Tax=Abr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7142contigP-wetherbeei_contig7142:2298..2963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3885.XP_007156300.1
PFAMsEF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8
Model size333
Max annot lvl35493|Streptophyta
KEGG koko:K13448
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872
Exons3
Evalue3.39e-10
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,37PH7@33090|Viridiplantae,3GBFZ@35493|Streptophyta,4JCZQ@91835|fabids
Descriptioncalcium-binding protein
Cds size333
COG categoryT
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.3977404-CDS-P-wetherbeei_contig7142:2297..24111683186961.3977404-CDS-P-wetherbeei_contig7142:2297..2411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7142 2298..2411 +
1683186961.4093857-CDS-P-wetherbeei_contig7142:2642..28121683186961.4093857-CDS-P-wetherbeei_contig7142:2642..2812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7142 2643..2812 +
1683186961.4186366-CDS-P-wetherbeei_contig7142:2914..29631683186961.4186366-CDS-P-wetherbeei_contig7142:2914..2963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7142 2915..2963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7142.3.1prot_P-wetherbeei_contig7142.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7142 2298..2963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7142.3.1

>prot_P-wetherbeei_contig7142.3.1 ID=prot_P-wetherbeei_contig7142.3.1|Name=mRNA_P-wetherbeei_contig7142.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
ETKLVFSLRAIKQRLDNEANGKTFSFTKIILKFGTIHKVLRRIRVVFQSF
DHDNDGSISKDGFRLAMEHLHCKLSEADVQNLFEVCDMTHVRERRDTLGL
REFYVMLAVAR
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mRNA from alignment at P-wetherbeei_contig7142:2298..2963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7142.3.1 ID=mRNA_P-wetherbeei_contig7142.3.1|Name=mRNA_P-wetherbeei_contig7142.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig7142:2298..2963+ (Phaeothamnion wetherbeei SAG_119_79)
GAAACAAAACTCGTCTTCTCTCTCCGAGCAATAAAGCAGCGGCTGGACAA TGAAGCAAACGGGAAAACGTTCAGCTTTACGAAGATCATTTTGAAATTCG GCACCATTCACAAGGTTCGACCTAGTTGCGTGGGGGAATAGGTTCATCGC CCTCCGGAAGGACATTTGGGACGTTCTTTACTGTTTCTTTCCCTAGCATT TTGCAGCAGGCAGCTGTATTGCGACTGTACCATCTGTTTTGCAACCTTGG TCATAAAGAGGGGAAAAAACGCCGCCTCTGAAGCGTGCGTTTCCGTTCTC CCCCACATTGCCCTTGTGACCCCTTCCCTCTTTTCAAAACTGCAGGTTCT TCGGCGCATCCGTGTCGTTTTTCAATCATTTGACCACGACAACGACGGGT CGATTTCTAAGGACGGATTTCGCCTAGCGATGGAGCACTTGCACTGCAAG TTATCAGAGGCCGACGTGCAAAACCTCTTTGAGGTCTGCGACATGACGCA TGTAAGGGAGCGTCGGTGCTAGAATTTGGCCTTCTGTAAGCTGCAGATAT TCAACCTTTATCCCTTTTGCGTCGCCTTTGCGCGCTCTCTGTCCTTCATT GTGTCGTCTGCTCAGAGCGACACGTTGGGCCTGAGAGAGTTTTACGTCAT GCTCGCGGTGGCGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7142:2298..2963+

>mRNA_P-wetherbeei_contig7142.3.1 ID=mRNA_P-wetherbeei_contig7142.3.1|Name=mRNA_P-wetherbeei_contig7142.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig7142:2298..2963+ (Phaeothamnion wetherbeei SAG_119_79)
GAAACAAAACTCGTCTTCTCTCTCCGAGCAATAAAGCAGCGGCTGGACAA
TGAAGCAAACGGGAAAACGTTCAGCTTTACGAAGATCATTTTGAAATTCG
GCACCATTCACAAGGTTCTTCGGCGCATCCGTGTCGTTTTTCAATCATTT
GACCACGACAACGACGGGTCGATTTCTAAGGACGGATTTCGCCTAGCGAT
GGAGCACTTGCACTGCAAGTTATCAGAGGCCGACGTGCAAAACCTCTTTG
AGGTCTGCGACATGACGCATGTAAGGGAGCGTCGCGACACGTTGGGCCTG
AGAGAGTTTTACGTCATGCTCGCGGTGGCGCGA
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