mRNA_P-wetherbeei_contig7141.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7141.1.1
Unique NamemRNA_P-wetherbeei_contig7141.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7141.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7141contigP-wetherbeei_contig7141:1985..2475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size491
Hectar predicted targeting categorysignal anchor
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.281711-UTR-P-wetherbeei_contig7141:1984..21141683186961.281711-UTR-P-wetherbeei_contig7141:1984..2114Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7141 1985..2114 +
1683186961.3003044-UTR-P-wetherbeei_contig7141:2423..24751683186961.3003044-UTR-P-wetherbeei_contig7141:2423..2475Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7141 2424..2475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.29115-CDS-P-wetherbeei_contig7141:2114..24231683186961.29115-CDS-P-wetherbeei_contig7141:2114..2423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7141 2115..2423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7141.1.1prot_P-wetherbeei_contig7141.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7141 2115..2423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7141.1.1

>prot_P-wetherbeei_contig7141.1.1 ID=prot_P-wetherbeei_contig7141.1.1|Name=mRNA_P-wetherbeei_contig7141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MVDVEGKHLYIMLSVVGSCVAMLFLVMFKMFGLETFFAASPLIVTLGGAW
LVATWIDKRREEEERVMKEEEAKKTATAGEPAKAAAVAKSVTASPTKASK
KL*
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mRNA from alignment at P-wetherbeei_contig7141:1985..2475+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7141.1.1 ID=mRNA_P-wetherbeei_contig7141.1.1|Name=mRNA_P-wetherbeei_contig7141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=491bp|location=Sequence derived from alignment at P-wetherbeei_contig7141:1985..2475+ (Phaeothamnion wetherbeei SAG_119_79)
CATCCTGCAACCTGTGCTGGACTCAAAGCTGAAAAACAGTGAAAGGAGAT
CAGAGGAGATTTTCGCTTTCACTCCCTTCTTCCCTGCCAGCGCTTCGCAG
CGCCGAAGAGAAAGAAAAAGGGGACGAAAGATGGTCGACGTCGAGGGGAA
GCATCTCTACATTATGTTGAGCGTTGTCGGGTCCTGCGTGGCCATGCTCT
TCTTGGTGATGTTCAAAATGTTCGGCTTGGAGACCTTCTTTGCAGCCTCG
CCGCTGATAGTAACATTAGGAGGCGCTTGGCTCGTGGCGACATGGATCGA
CAAGCGGCGCGAAGAGGAGGAGAGGGTAATGAAGGAGGAGGAGGCGAAGA
AGACAGCGACGGCTGGAGAACCGGCGAAGGCCGCGGCGGTTGCAAAGTCG
GTGACGGCGTCGCCGACGAAGGCAAGCAAGAAGTTATGAAAAGGGGCCTC
CCCGCGTGGAGCCATGTAAGAAATATGCACAGGACACAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7141:1985..2475+

>mRNA_P-wetherbeei_contig7141.1.1 ID=mRNA_P-wetherbeei_contig7141.1.1|Name=mRNA_P-wetherbeei_contig7141.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig7141:1985..2475+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGACGTCGAGGGGAAGCATCTCTACATTATGTTGAGCGTTGTCGG
GTCCTGCGTGGCCATGCTCTTCTTGGTGATGTTCAAAATGTTCGGCTTGG
AGACCTTCTTTGCAGCCTCGCCGCTGATAGTAACATTAGGAGGCGCTTGG
CTCGTGGCGACATGGATCGACAAGCGGCGCGAAGAGGAGGAGAGGGTAAT
GAAGGAGGAGGAGGCGAAGAAGACAGCGACGGCTGGAGAACCGGCGAAGG
CCGCGGCGGTTGCAAAGTCGGTGACGGCGTCGCCGACGAAGGCAAGCAAG
AAGTTATGA
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