mRNA_P-wetherbeei_contig7138.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7138.2.1
Unique NamemRNA_P-wetherbeei_contig7138.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7138.2.1 vs. uniprot
Match: D8LIM8_ECTSI (DHHC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 7.760e-27
Identity = 75/164 (45.73%), Postives = 91/164 (55.49%), Query Frame = 1 
Query:    4 YRGQTMAVAAAKGDLPLAAMLYYSGEEAGFNMLVADAEGNAPLHYAALSESPDTVAFLLRKATVRAAAL---------------PPP---------------VDVRNYAGETPALRAAVAGHVPVLRFLLADCGANLFATDANRNTVLHNAARSGRLWAVIWLL 405
            +RG  +  A   GDLPL AML   G E G NML ADA+GN PLHYA LSESPD + FLLRKA                      PP                ++ RN   ETP LRAAV G+V V+  LL + GA++FA DA++NTV HNAAR+G LWA+ + L
Sbjct:   33 HRGVGLPAACVNGDLPLVAMLLAEGAENGINMLSADADGNNPLHYACLSESPDLITFLLRKADAXXXXXXXXXXXXXXXXXXXRPPSGVHDTPRQRLAKSRLLEARNAESETPLLRAAVGGNVAVVDALL-EAGADMFAVDASQNTVFHNAARNGMLWALAFFL 195
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BLAST of mRNA_P-wetherbeei_contig7138.2.1 vs. uniprot
Match: A0A5D6YC91_9STRA (Palmitoyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC91_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.120e-22
Identity = 79/194 (40.72%), Postives = 100/194 (51.55%), Query Frame = 1 
Query:    4 YRGQTMAVAAAKGDLPLAAMLYYSGEEAGFNML-VADAEGNAPLHYAALS--ESPDTVAFLLRKATVRAAALPPPVDVRNYAGETPALRAAVAGHVPVLRFLLADCGANLFATDANRNTVLHNAARSGRLWAVIWLLERAREALGEEGAAAFLAQGDVDNHTALEWACYFGHLGVVRVLLREGLDIQATDDTGR 576
            Y G     AAA GD PL  +L+     A  ++L +AD  GN+ LH+AA    + PD + FLL++A     ALPP VD RN A ETP LRAA AG++ +   LL   GA L A DA  NT  H+AA  G L  +  LLE  R A  ++ A+  L          L +AC   H  VV  LL+ G D    D  GR
Sbjct:    5 YDGTNALAAAANGDFPLLVLLWGMAMAAPADLLALADDAGNSLLHHAAAGAGDEPDALHFLLQQAQAGGRALPPLVDARNRAQETPLLRAASAGNLRLAAALLHAGGATLLARDAAGNTPAHHAAARGHLGVLHLLLESERHAASKDSAS--LGGRCNAKRDVLFYACMNEHKAVVMYLLQRGYDPNQPDADGR 196
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BLAST of mRNA_P-wetherbeei_contig7138.2.1 vs. uniprot
Match: A0A381XLE5_9ZZZZ (Cytochrome c domain-containing protein (Fragment) n=2 Tax=root TaxID=1 RepID=A0A381XLE5_9ZZZZ)

HSP 1 Score: 56.6 bits (135), Expect = 1.030e-5
Identity = 46/123 (37.40%), Postives = 57/123 (46.34%), Query Frame = 1 
Query:  205 ALPPPVDVRNYAGETPALRAAVAGHVPVLRFLLADCGANLFATDANRNTVLHNAARSGRLWAVIWLLERAREALGEEGAAAFLAQGDVDNHTALEWACYFGHLGVVRVLLREGLDIQATDDTG 573
            A PP VD+           AA  G++  L    A  G NL ATDAN N+ LH AA   +  A  WLL             AF+     D  T L  A +FGH   V+VLL+ G D+ AT+D G
Sbjct:  803 AAPPSVDLWT---------AARTGNIGALEEHQA-AGTNLNATDANSNSALHVAAILDQAKAADWLLTNG----------AFVDIRGGDGGTPLITAAFFGHPKTVKVLLKHGADVNATNDLG 905
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BLAST of mRNA_P-wetherbeei_contig7138.2.1 vs. uniprot
Match: A0A2R6X520_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X520_MARPO)

HSP 1 Score: 55.1 bits (131), Expect = 2.580e-5
Identity = 45/161 (27.95%), Postives = 74/161 (45.96%), Query Frame = 1 
Query:   94 NMLVADAEGNAPLHYAALSESPDTVAFLLRKATVRAAALPPPVDVRNYAGETPALRAAVAGHVPVLRFLLADCGANLFATDANRNTVLHNAARSGRLWAVIWLLERAREALGEEGAAA-FLAQGDVDNHTALEWACYFGHLGVVRVLLREGLDIQATDDTG 573
            N+++   EG   LHYAA     +T+  +L        ++   +  +   G TP + A   GH  V+  LL D  A++  +       LH AAR GR  A   ++ER  EA+          ++  V N ++L +AC +GH+ +V +LL    D+    + G
Sbjct:   95 NVMMTSEEGWNCLHYAARRCHGETLRLILES---HPDSVDSTIQGKLRLGYTPLMLACEFGHEEVVTLLL-DYRASVTMSSEEGMNALHYAARFGRFRATKSIVERCAEAINSVTLRLKTTSETQVQNKSSLMFACQYGHVTIVNILLDHRADVMIYSELG 251
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7138.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIM8_ECTSI7.760e-2745.73DHHC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5D6YC91_9STRA3.120e-2240.72Palmitoyltransferase n=1 Tax=Pythium brassicum Tax... [more]
A0A381XLE5_9ZZZZ1.030e-537.40Cytochrome c domain-containing protein (Fragment) ... [more]
A0A2R6X520_MARPO2.580e-527.95Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7138contigP-wetherbeei_contig7138:1839..2564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LIM8
PFAMsAnk_2,Ank_4,DHHC
Model size678
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.27e-27
EggNOG OGsCOG0666@1|root,COG5273@1|root,KOG0504@2759|Eukaryota,KOG0509@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size678
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186961.00131-CDS-P-wetherbeei_contig7138:1838..20451683186961.00131-CDS-P-wetherbeei_contig7138:1838..2045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7138 1839..2045 +
1683186961.0109973-CDS-P-wetherbeei_contig7138:2093..25641683186961.0109973-CDS-P-wetherbeei_contig7138:2093..2564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7138 2094..2564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7138.2.1prot_P-wetherbeei_contig7138.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7138 1839..2564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7138.2.1

>prot_P-wetherbeei_contig7138.2.1 ID=prot_P-wetherbeei_contig7138.2.1|Name=mRNA_P-wetherbeei_contig7138.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MYRGQTMAVAAAKGDLPLAAMLYYSGEEAGFNMLVADAEGNAPLHYAALS
ESPDTVAFLLRKATVRAAALPPPVDVRNYAGETPALRAAVAGHVPVLRFL
LADCGANLFATDANRNTVLHNAARSGRLWAVIWLLERAREALGEEGAAAF
LAQGDVDNHTALEWACYFGHLGVVRVLLREGLDIQATDDTGRTLLHWSCS
QGRVALVRYLVRLGLDPDQPDGGGQT
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mRNA from alignment at P-wetherbeei_contig7138:1839..2564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7138.2.1 ID=mRNA_P-wetherbeei_contig7138.2.1|Name=mRNA_P-wetherbeei_contig7138.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig7138:1839..2564+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCGAGGCCAGACCATGGCGGTGGCGGCGGCCAAGGGCGACTTGCC
ACTGGCCGCGATGCTCTATTATAGCGGCGAAGAGGCCGGCTTCAACATGC
TCGTGGCAGACGCCGAGGGCAACGCCCCACTGCACTACGCGGCGCTGTCT
GAGAGCCCCGACACCGTCGCTTTCCTGCTGCGCAAGGCAACGGTGCGCGC
GGCTGCCGTCGCCCGTGCCGCCGCCGCCACCGATCCTGCCGCCGCTGCTC
CGCAGCTGCCGCCGCCCGTCGATGTCCGCAACTACGCCGGCGAGACGCCG
GCCCTCCGTGCCGCCGTCGCCGGCCACGTGCCGGTGCTTCGATTTTTATT
AGCGGACTGCGGCGCCAACCTATTTGCAACGGACGCCAACCGGAACACCG
TCCTGCACAACGCCGCCCGCAGCGGCCGGCTCTGGGCGGTGATCTGGCTG
CTGGAGCGTGCGCGCGAGGCGCTTGGGGAGGAGGGCGCGGCAGCTTTTTT
GGCGCAGGGCGACGTCGACAACCATACAGCGCTGGAATGGGCGTGCTATT
TCGGCCACTTGGGTGTAGTTCGGGTGTTGCTGCGGGAAGGGCTTGACATC
CAGGCAACGGACGACACGGGCCGGACGCTTCTGCACTGGAGCTGCAGTCA
GGGCCGCGTGGCACTGGTCCGGTACCTGGTGCGCCTCGGGCTCGACCCGG
ATCAGCCGGACGGCGGCGGCCAGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7138:1839..2564+

>mRNA_P-wetherbeei_contig7138.2.1 ID=mRNA_P-wetherbeei_contig7138.2.1|Name=mRNA_P-wetherbeei_contig7138.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig7138:1839..2564+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCGAGGCCAGACCATGGCGGTGGCGGCGGCCAAGGGCGACTTGCC
ACTGGCCGCGATGCTCTATTATAGCGGCGAAGAGGCCGGCTTCAACATGC
TCGTGGCAGACGCCGAGGGCAACGCCCCACTGCACTACGCGGCGCTGTCT
GAGAGCCCCGACACCGTCGCTTTCCTGCTGCGCAAGGCAACGGTGCGCGC
GGCTGCCCTGCCGCCGCCCGTCGATGTCCGCAACTACGCCGGCGAGACGC
CGGCCCTCCGTGCCGCCGTCGCCGGCCACGTGCCGGTGCTTCGATTTTTA
TTAGCGGACTGCGGCGCCAACCTATTTGCAACGGACGCCAACCGGAACAC
CGTCCTGCACAACGCCGCCCGCAGCGGCCGGCTCTGGGCGGTGATCTGGC
TGCTGGAGCGTGCGCGCGAGGCGCTTGGGGAGGAGGGCGCGGCAGCTTTT
TTGGCGCAGGGCGACGTCGACAACCATACAGCGCTGGAATGGGCGTGCTA
TTTCGGCCACTTGGGTGTAGTTCGGGTGTTGCTGCGGGAAGGGCTTGACA
TCCAGGCAACGGACGACACGGGCCGGACGCTTCTGCACTGGAGCTGCAGT
CAGGGCCGCGTGGCACTGGTCCGGTACCTGGTGCGCCTCGGGCTCGACCC
GGATCAGCCGGACGGCGGCGGCCAGACG
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