mRNA_P-wetherbeei_contig7138.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7138.1.1
Unique NamemRNA_P-wetherbeei_contig7138.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A6H5K503_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K503_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.140e-19
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    4 EMQRDFSTPPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPPGVSAPAAAE 219
            E+++DFS P  F  F + Q +R + +W++LSL  S AGLP+H HGETWLG+ YG KRWAIYPP  S P  AE
Sbjct:  234 ELKKDFSVPSVFRGFNSYQSMRMQTSWNMLSLGASGAGLPFHSHGETWLGIAYGAKRWAIYPPTASRPYIAE 305
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A7S2XY76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY76_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.570e-18
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 PEMQRDFSTPPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGR-KRWAIYPPGVSAPA 210
            P +++D+  P YF  F     +++  +WH++SL  SR GLP+HVHGETWL +V+G+ KRW IYPPG + PA
Sbjct:   93 PGIRQDYLMPAYFHGFNGKSSMQSGASWHLMSLGASRTGLPFHVHGETWLAMVHGQGKRWFIYPPGRAVPA 163
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A7S2RCI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCI2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.660e-12
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 PEMQRDFSTPPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPPGVSAP 207
            PE++  FSTP  F    +P       + H+LSL  SR+GLP+HVHGETWL +++G KRW ++ PG   P
Sbjct:   45 PELRHHFSTPALF----HPWGGDAHGSSHILSLGASRSGLPFHVHGETWLAVLFGSKRWFLFAPGDDVP 109
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A7S2RCS8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCS8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.020e-12
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 PEMQRDFSTPPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPPGVSAP 207
            PE++  FSTP  F    +P       + H+LSL  SR+GLP+HVHGETWL +++G KRW ++ PG   P
Sbjct:   45 PELRHHFSTPALF----HPWGGDAHGSSHILSLGASRSGLPFHVHGETWLAVLFGSKRWFLFAPGDDVP 109
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A8J2T276_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T276_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.480e-10
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 PEMQRDFSTPPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPPGVS 201
            PE+ RDF+ PP  +     +      ++ +LSL  SR+GLP H HGE WLGLV GRKRW +  PG +
Sbjct:  155 PELARDFAAPPVLA-----RAFPAAASYGLLSLGPSRSGLPPHAHGEAWLGLVAGRKRWFLRAPGTA 216
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A7S3JWA2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWA2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.110e-6
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:   28 PPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPPG 195
            PP FS        R  + + + SL  SR+GLP H HG+TWL + +G KRW + PPG
Sbjct:   72 PPKFST-------RQDEPYPIFSLGPSRSGLPSHAHGDTWLLVSHGVKRWFLAPPG 120
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A7K7AHD8_9AVES (JMJD8 protein (Fragment) n=3 Tax=Aves TaxID=8782 RepID=A0A7K7AHD8_9AVES)

HSP 1 Score: 52.0 bits (123), Expect = 3.480e-6
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   31 PYFSNFCNPQ-RLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPP 192
            P F N+  P  R+      +   +AGS +G+P+H HG  +  ++YGRKRW +YPP
Sbjct:   95 PLFQNYVPPPFRIPGTTGAYSFGIAGSGSGVPFHWHGPGYSEVIYGRKRWFLYPP 149
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: UPI000E1B960F (jmjC domain-containing protein 8 n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=UPI000E1B960F)

HSP 1 Score: 52.0 bits (123), Expect = 4.660e-6
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   31 PYFSNFCNPQ-RLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPP 192
            P F N+  P  R+      +   +AGS +G+P+H HG  +  ++YGRKRW +YPP
Sbjct:  146 PLFQNYVPPPFRIPGTTGAYSFGIAGSGSGVPFHWHGPGYSEVIYGRKRWFLYPP 200
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BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A8C6ZN21_NOTPE (Jumonji domain containing 8 n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6ZN21_NOTPE)

HSP 1 Score: 52.0 bits (123), Expect = 4.770e-6
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   31 PYFSNFCNPQ-RLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPP 192
            P F N+  P  R+      +   +AGS +G+P+H HG  +  ++YGRKRW +YPP
Sbjct:  153 PLFQNYVPPPFRIPGTTGAYSFGIAGSGSGVPFHWHGPGYSEVIYGRKRWFLYPP 207
[Close]
BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Match: A0A8J1XHK5_OWEFU (Ofus.G013889 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XHK5_OWEFU)

HSP 1 Score: 52.0 bits (123), Expect = 5.580e-6
Identity = 23/68 (33.82%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    4 EMQRDFSTPPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGLVYGRKRWAIYPPGVSAP 207
            E+Q     P YF +    +    +DA  ++ L  S +G+ +H H +TW G+++G KRW +YPP  + P
Sbjct:  263 ELQHSIKPPRYFKS----KTTSKEDA--IVFLGSSLSGVTFHQHADTWNGVIFGHKRWFLYPPDQTPP 324
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7138.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K503_9PHAE1.140e-1955.56JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2XY76_9STRA5.570e-1849.30Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RCI2_9STRA1.660e-1246.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RCS8_9STRA2.020e-1246.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2T276_9STRA2.480e-1046.27Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3JWA2_9STRA2.110e-644.64Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7K7AHD8_9AVES3.480e-640.00JMJD8 protein (Fragment) n=3 Tax=Aves TaxID=8782 R... [more]
UPI000E1B960F4.660e-640.00jmjC domain-containing protein 8 n=1 Tax=Nothoproc... [more]
A0A8C6ZN21_NOTPE4.770e-640.00Jumonji domain containing 8 n=1 Tax=Nothoprocta pe... [more]
A0A8J1XHK5_OWEFU5.580e-633.82Ofus.G013889 protein n=1 Tax=Owenia fusiformis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7138contigP-wetherbeei_contig7138:42..260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42254.XP_004604500.1
Preferred nameJMJD8
PFAMsCupin_8
Model size219
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.21e-06
EggNOG OGsKOG2131@1|root,KOG2131@2759|Eukaryota,39SJT@33154|Opisthokonta,3BH50@33208|Metazoa,3CXRR@33213|Bilateria,47ZW0@7711|Chordata,494WA@7742|Vertebrata,3J3RT@40674|Mammalia
DescriptionCupin-like domain
Cds size213
COG categoryBT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186960.9587996-CDS-P-wetherbeei_contig7138:41..2541683186960.9587996-CDS-P-wetherbeei_contig7138:41..254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7138 42..254 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186960.973107-UTR-P-wetherbeei_contig7138:254..2601683186960.973107-UTR-P-wetherbeei_contig7138:254..260Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7138 255..260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7138.1.1prot_P-wetherbeei_contig7138.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7138 42..254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7138.1.1

>prot_P-wetherbeei_contig7138.1.1 ID=prot_P-wetherbeei_contig7138.1.1|Name=mRNA_P-wetherbeei_contig7138.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MQRDFSTPPYFSNFCNPQRLRNKDAWHVLSLAGSRAGLPWHVHGETWLGL
VYGRKRWAIYPPGVSAPAAAE
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mRNA from alignment at P-wetherbeei_contig7138:42..260-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7138.1.1 ID=mRNA_P-wetherbeei_contig7138.1.1|Name=mRNA_P-wetherbeei_contig7138.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig7138:42..260- (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGATGCAGCGCGATTTCTCTACGCCGCCGTACTTTTCCAATTTCTG
TAACCCCCAGCGGCTGCGGAACAAGGACGCCTGGCACGTGCTGTCGCTCG
CCGGATCGCGCGCCGGACTCCCATGGCACGTCCACGGCGAGACCTGGTTG
GGTCTGGTCTACGGCCGGAAGCGCTGGGCGATCTACCCGCCCGGCGTGTC
GGCGCCGGCCGCCGCCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7138:42..260-

>mRNA_P-wetherbeei_contig7138.1.1 ID=mRNA_P-wetherbeei_contig7138.1.1|Name=mRNA_P-wetherbeei_contig7138.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig7138:42..260- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGCGATTTCTCTACGCCGCCGTACTTTTCCAATTTCTGTAACCC
CCAGCGGCTGCGGAACAAGGACGCCTGGCACGTGCTGTCGCTCGCCGGAT
CGCGCGCCGGACTCCCATGGCACGTCCACGGCGAGACCTGGTTGGGTCTG
GTCTACGGCCGGAAGCGCTGGGCGATCTACCCGCCCGGCGTGTCGGCGCC
GGCCGCCGCCGAG
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