mRNA_P-wetherbeei_contig7126.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7126.1.1
Unique NamemRNA_P-wetherbeei_contig7126.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: A0A836CA21_9STRA (YGGT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA21_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.000e-51
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:  322 AEPALAAAPGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLSNK 633
            A PA A  PGWV PTR ALDP LLY EFAF+CRIVLSWYPQTDLNKAPQNLVAWPTEP+L+PTR VVPPAFGVD+SPIVWVMI SF+REIL GQQG+  +LS +
Sbjct:   86 ATPAFADVPGWVGPTRAALDPFLLYMEFAFLCRIVLSWYPQTDLNKAPQNLVAWPTEPILKPTRAVVPPAFGVDISPIVWVMILSFVREILFGQQGIFNMLSQQ 189
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: D8LHQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.060e-49
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:  343 APGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLSNK 633
            AP WV PT+L LDP LLYFEFAFV RIVLSWYP+ DLN APQNLVAWPTEP+L+PTR ++PPAFGVD+SPIVWVMICS + EILLGQQG+L L+SNK
Sbjct:  133 APAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: A0A6H5L5E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E9_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.180e-49
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:  343 APGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLSNK 633
            AP WV PT+L LDP LL+FEFAFV RIVLSWYP+ DLN APQNLVAWPTEP+LRPTR ++PPAFGVD+SPIVWVMICS + EILLGQQG+L L+SNK
Sbjct:  125 APAWVGPTKLVLDPTLLFFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 221
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: A0A7S2V560_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V560_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.110e-37
Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:  325 EPALAAAPGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLSNK 633
            E A AAAP WVAPT+L LDP L     A + R+VLSWYP   L+KAP + +  PTEP+L+ TR+VVPPAFGVDVSPIVW+MI SF  EILLGQQGLLT+L NK
Sbjct:   74 ESAFAAAPVWVAPTKLILDPLLNIVSLAMLARVVLSWYPSISLDKAPFSYLKAPTEPVLQVTREVVPPAFGVDVSPIVWIMISSFFHEILLGQQGLLTILQNK 176
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: A0A7S3UWL9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL9_HETAK)

HSP 1 Score: 134 bits (336), Expect = 1.850e-35
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:  346 PGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLS 627
            P WV PT   L P L  F  A + RIVLSWYP  DLN+AP NLVAWPTEPLL  TR VVPPAFGVD+SPIVW+M+ SF+ E+ LG QG+LTLL+
Sbjct:   81 PAWVEPTSTVLGPFLAVFSLAMLARIVLSWYPSIDLNEAPFNLVAWPTEPLLAFTRGVVPPAFGVDISPIVWLMVASFVNEVALGPQGILTLLA 174
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: A0A7S2PCB6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCB6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.260e-35
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:  352 WVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTL 621
            WV P +  LDP+L    FA +CR+V+SWYP+T++N+ P N+V WPTEPLLR TR VVPPAFGVD+SPIVW+ + +FL EI LGQQGLLTL
Sbjct:   79 WVEPLKNVLDPSLNLLSFAMLCRVVISWYPETNVNEVPYNIVVWPTEPLLRVTRGVVPPAFGVDISPIVWLGVFTFLHEIFLGQQGLLTL 168
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: A0A7S1FZ37_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ37_9STRA)

HSP 1 Score: 132 bits (331), Expect = 7.340e-35
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:  352 WVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTL 621
            WV P +  LDP L    FA +CRIV+SWYP T+L+  P +L  WPTEPLLRPTR VVPPAFGVD+SP+VW+ I +FL EILLGQQGLLTL
Sbjct:   74 WVVPLQSVLDPLLNLLSFAMLCRIVISWYPNTNLSTLPYSLAVWPTEPLLRPTRAVVPPAFGVDISPMVWLGIFTFLHEILLGQQGLLTL 163
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: W7TNB9_9STRA (Integral membrane protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNB9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.410e-34
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:  334 LAAAPGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLSNK 633
            L AA  WV+P +  ++P L     AF+ RIVLSWYPQ DLNK P NL+AWPTEP L  TR VVPPAFGVD+SPI+W    +FLREIL+  QG+LTLL  K
Sbjct:   71 LLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: L1J932_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J932_GUITC)

HSP 1 Score: 125 bits (314), Expect = 5.700e-33
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:  337 AAAPGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLSNK 633
            AAAP W+ PTR +LD  L  F   F  RI L+WYPQ DLN+ PQN+VAWPTEP  +  R  VPP FGVD+SPIV   + SF+REI LGQQG+LT+++NK
Sbjct:   20 AAAPEWLEPTRSSLDIGLALFSLLFFLRIPLTWYPQMDLNQFPQNIVAWPTEPFCKLVRLAVPPLFGVDISPIVLYGVLSFIREIFLGQQGVLTMIANK 118
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BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Match: A0A7S0LAY5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LAY5_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 6.250e-33
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:  304 AVAAAAAEPALAAAPGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQNLVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTLLSNK 633
            AVA A  +PALA    W+APT+  L P    F   F+ R+VLSW+P+ +LN+ P N+ AWPTEP+L+ TRQV+PP  GVD+SP+VWV I SF  EILLG QG+LT+L  K
Sbjct:   70 AVAFACVDPALANDVSWIAPTKAVLGPTFSIFTVLFLMRVVLSWFPKYNLNELPWNIAAWPTEPILKGTRQVIPPVAGVDISPLVWVAIVSFFSEILLGPQGILTILQKK 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7126.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CA21_9STRA1.000e-5178.85YGGT family-domain-containing protein n=1 Tax=Trib... [more]
D8LHQ4_ECTSI1.060e-4978.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5E9_9PHAE1.180e-4978.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V560_9STRA5.110e-3766.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UWL9_HETAK1.850e-3565.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2PCB6_9STRA4.260e-3564.44Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1FZ37_9STRA7.340e-3566.67Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
W7TNB9_9STRA8.410e-3461.00Integral membrane protein n=2 Tax=Nannochloropsis ... [more]
L1J932_GUITC5.700e-3359.60Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0LAY5_9EUKA6.250e-3355.45Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7126contigP-wetherbeei_contig7126:2144..2993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHQ4
Preferred nameCCB3
PFAMsYGGT
Model size762
Max annot lvl2759|Eukaryota
KEGG koko:K02221
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010190,GO:0016020,GO:0016043,GO:0017004,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
Exons2
Evalue1.86e-50
EggNOG OGsCOG0762@1|root,2S21M@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family Ycf19
Ec32 orthologEc-20_002670.1
DescriptionYGGT family
Cds size615
COG categoryS
BRITEko00000,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186960.068872-UTR-P-wetherbeei_contig7126:2143..21641683186960.068872-UTR-P-wetherbeei_contig7126:2143..2164Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7126 2144..2164 +
1683186960.095417-UTR-P-wetherbeei_contig7126:2867..29931683186960.095417-UTR-P-wetherbeei_contig7126:2867..2993Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7126 2868..2993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186960.078981-CDS-P-wetherbeei_contig7126:2164..22191683186960.078981-CDS-P-wetherbeei_contig7126:2164..2219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7126 2165..2219 +
1683186960.087195-CDS-P-wetherbeei_contig7126:2307..28671683186960.087195-CDS-P-wetherbeei_contig7126:2307..2867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7126 2308..2867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7126.1.1prot_P-wetherbeei_contig7126.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7126 2165..2867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7126.1.1

>prot_P-wetherbeei_contig7126.1.1 ID=prot_P-wetherbeei_contig7126.1.1|Name=mRNA_P-wetherbeei_contig7126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MRSFFIVAAAFLAPSIADAFQGPGMSRTASRGAWRPSEAAANSPRHHVAV
VRKALSSHSHREEEGVDIPKPAQGRVGADARSHGALAGGAAFALAVAAAA
AEPALAAAPGWVAPTRLALDPALLYFEFAFVCRIVLSWYPQTDLNKAPQN
LVAWPTEPLLRPTRQVVPPAFGVDVSPIVWVMICSFLREILLGQQGLLTL
LSNK*
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mRNA from alignment at P-wetherbeei_contig7126:2144..2993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7126.1.1 ID=mRNA_P-wetherbeei_contig7126.1.1|Name=mRNA_P-wetherbeei_contig7126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=850bp|location=Sequence derived from alignment at P-wetherbeei_contig7126:2144..2993+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTCCACGGACTAGCATAGCATGCGCTCCTTCTTCATCGTCGCCGCAGC
GTTCCTGGCGCCGTCCATAGCCGATGGTGAGCTCCTATTTTGACCTTGAG
GCCCATGTGGCATTTGTCAGCCCCTAATAACCCCTCTTTCCACCTTCTAT
TTGTTGCCGAACAGCTTTCCAAGGACCTGGCATGTCAAGGACCGCCAGTA
GAGGCGCATGGCGGCCAAGCGAAGCTGCAGCAAATTCTCCTCGCCACCAC
GTCGCCGTTGTTCGCAAGGCCTTATCATCCCACAGCCACAGGGAAGAAGA
GGGCGTTGACATTCCAAAGCCGGCACAAGGACGCGTCGGCGCTGATGCTC
GGTCGCACGGCGCCCTCGCCGGGGGGGCCGCTTTCGCTTTGGCCGTGGCC
GCCGCCGCCGCCGAGCCAGCCCTGGCTGCCGCCCCCGGCTGGGTGGCGCC
GACGCGGCTGGCACTCGACCCGGCGTTGCTCTACTTCGAGTTCGCCTTCG
TCTGCCGGATCGTGCTGTCGTGGTACCCACAGACGGACCTCAACAAGGCT
CCACAGAACCTCGTGGCGTGGCCGACCGAGCCGCTGCTGCGACCGACGCG
GCAGGTAGTGCCACCGGCCTTCGGGGTCGACGTCAGCCCCATCGTGTGGG
TGATGATTTGTTCTTTCCTGCGGGAGATTCTGCTTGGGCAGCAGGGTCTC
TTGACGCTGCTCTCAAACAAATAGAATAGAGACCTCAGGTCAGAGTGTGC
CGTACCGTAGCTGCGGTCGCGTAAGAAAAAGAGTGCTGTAAGACGTAAGA
TGTGAAGAAATTAAGATATGATTCGCGGCATTAAGCTGCCGCCTTGTTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7126:2144..2993+

>mRNA_P-wetherbeei_contig7126.1.1 ID=mRNA_P-wetherbeei_contig7126.1.1|Name=mRNA_P-wetherbeei_contig7126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig7126:2144..2993+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTCCTTCTTCATCGTCGCCGCAGCGTTCCTGGCGCCGTCCATAGC
CGATGCTTTCCAAGGACCTGGCATGTCAAGGACCGCCAGTAGAGGCGCAT
GGCGGCCAAGCGAAGCTGCAGCAAATTCTCCTCGCCACCACGTCGCCGTT
GTTCGCAAGGCCTTATCATCCCACAGCCACAGGGAAGAAGAGGGCGTTGA
CATTCCAAAGCCGGCACAAGGACGCGTCGGCGCTGATGCTCGGTCGCACG
GCGCCCTCGCCGGGGGGGCCGCTTTCGCTTTGGCCGTGGCCGCCGCCGCC
GCCGAGCCAGCCCTGGCTGCCGCCCCCGGCTGGGTGGCGCCGACGCGGCT
GGCACTCGACCCGGCGTTGCTCTACTTCGAGTTCGCCTTCGTCTGCCGGA
TCGTGCTGTCGTGGTACCCACAGACGGACCTCAACAAGGCTCCACAGAAC
CTCGTGGCGTGGCCGACCGAGCCGCTGCTGCGACCGACGCGGCAGGTAGT
GCCACCGGCCTTCGGGGTCGACGTCAGCCCCATCGTGTGGGTGATGATTT
GTTCTTTCCTGCGGGAGATTCTGCTTGGGCAGCAGGGTCTCTTGACGCTG
CTCTCAAACAAATAG
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