mRNA_P-wetherbeei_contig7122.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7122.2.1
Unique NamemRNA_P-wetherbeei_contig7122.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A1F3ZWH5_9PROT (DUF4124 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZWH5_9PROT)

HSP 1 Score: 155 bits (392), Expect = 7.620e-44
Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = 1
Query:   25 LALMGFAALAYGAEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPGAKP 504
            LAL   AA    A++YRWVDEKG V +   PPP   KKVEQ+K+G  A+  P  + PYS+QLA KNFP+T ++T+ CG+ C  A+AHL +RG P+TE+NP       +FE FKK+TGG+ EVP+L VG  + VKGYL  +WD ALD AGYP T L   KP
Sbjct:    9 LALWILAAPLGAAQLYRWVDEKGNVEWRDTPPPPTAKKVEQRKVG--ATPPPGGELPYSLQLAVKNFPVTLWTTS-CGDACDKARAHLSRRGVPHTEKNPQ-----SDFETFKKVTGGS-EVPVLFVGNNR-VKGYLEPDWDAALDFAGYPKTALVQVKP 158          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A7C2YAM5_9PROT (Glutaredoxin family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YAM5_9PROT)

HSP 1 Score: 152 bits (384), Expect = 1.550e-42
Identity = 79/163 (48.47%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   16 WTLLALMGFAALAYGAEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPGAKP 504
            W    L   AA    A++YRWVDEKG V +   PPP+  +KVEQ+ + G  S  P  + PYS+Q A KNFP+T ++T +CG+ C  A+AHL +RG P+TE++P       +FE FKK++GG  EVP+L VG    +KGYL  EWD ALD AGYP T L   KP
Sbjct:   13 WIGCVLAMLAAPLGAAQLYRWVDEKGNVEWRDTPPPSTARKVEQRTISG--STIPTGELPYSLQQAVKNFPVTLWTT-DCGDLCNRARAHLARRGVPHTEKDPQ-----NDFEAFKKVSGGGAEVPLLLVGSTT-IKGYLEREWDSALDYAGYPKTALVSVKP 166          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A1F4DPU7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DPU7_9PROT)

HSP 1 Score: 150 bits (378), Expect = 9.920e-42
Identity = 80/160 (50.00%), Postives = 101/160 (63.12%), Query Frame = 1
Query:   25 LALMGFAALAYGAEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPGAKP 504
            + L+   A  + A+ YRWVDEKG V +   PPP N KKVEQ+ +  N      S+ PYSVQ A KNFP+T + T +CG+ C  A+AHL++RG PYTERN        E E FKK +G  +EVP+L VG  +L KGYL S+WD ALD AGYP T +   KP
Sbjct:    4 MLLLATTATLFAAQFYRWVDEKGNVEWRDTPPPPNAKKVEQRNIRVNTIQT--SELPYSVQQAVKNFPVTLWLT-DCGDLCDKARAHLNRRGMPYTERN-----GQSEIEAFKKASGDGMEVPLLFVGNKRL-KGYLESDWDAALDTAGYPKTAVAPLKP 154          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A1F4DFD4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DFD4_9PROT)

HSP 1 Score: 147 bits (370), Expect = 1.800e-40
Identity = 77/148 (52.03%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   61 AEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPGAKP 504
            A++YRWVDEKG V +   PPPA  KKVEQ+ +G   S    SD PYSVQ A KNFP+T + T  CG+ C  A++HL++RG PYTE +P       +   FKK +GG L+VP+L VG  +L KGYL S+W+ ALD AGYP T L   KP
Sbjct:   21 AQLYRWVDEKGNVEWRDTPPPATAKKVEQRTIG--VSTIETSDLPYSVQQAVKNFPVTLWVT-NCGDACDKARSHLNRRGVPYTENDPQ-----SDLAGFKKASGGDLQVPLLFVGSNRL-KGYLESDWEAALDVAGYPKTALGPIKP 159          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A7C3JP59_9PROT (Glutaredoxin family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JP59_9PROT)

HSP 1 Score: 146 bits (369), Expect = 2.540e-40
Identity = 81/163 (49.69%), Postives = 105/163 (64.42%), Query Frame = 1
Query:   19 TLLALMGFAALAYGAEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLP-GAKP 504
            +++ L+        A++YRWVDE+G V +   PPP N KKVE ++ GG  S    S  PYSVQ A KNFP+T ++T +CG PC  A+AHL +RG PYTE++P       + E F K+TGG+ EVP+L VG  + VKGYL SEWD ALD AGYP T +  G KP
Sbjct:    7 SVVILLAATGTLLAAQIYRWVDEQGNVEWRDTPPPPNAKKVEIRRPGG--SMIETSSLPYSVQQAAKNFPVTLWTT-DCGAPCDQARAHLARRGVPYTEKDPQ-----NDIEAFTKLTGGS-EVPVLYVGANR-VKGYLESEWDAALDVAGYPRTAITAGGKP 159          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A3N5WC82_9PROT (Glutaredoxin family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WC82_9PROT)

HSP 1 Score: 139 bits (351), Expect = 1.930e-38
Identity = 75/158 (47.47%), Postives = 99/158 (62.66%), Query Frame = 1
Query:   22 LLALMGFAALAYGAEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPG 495
            LLA +  A     A++YRWVD+KG V +   PPPA  KKVE++ +GG  S    S  PYS+Q A +N P+T +    CGEPC  A+AHL +RG P+T++NP         E +KK+T G +EVP+L VG+ +L KGYL S WD  LD AGYP   +PG
Sbjct:    7 LLAALLIAIPGQTAQLYRWVDDKGRVEWRDTPPPATAKKVERRSVGG--SVIETSKLPYSLQQAVQNHPVTLFVN-NCGEPCDKARAHLMRRGIPFTQKNPQ-----DNIEGYKKLTEGGMEVPLLFVGKEQL-KGYLDSSWDSVLDTAGYPRQSVPG 155          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A0S8C5W5_9PROT (DUF4124 domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C5W5_9PROT)

HSP 1 Score: 130 bits (326), Expect = 9.980e-35
Identity = 77/161 (47.83%), Postives = 101/161 (62.73%), Query Frame = 1
Query:   25 LALMGFAALAYGAE-MYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPGAKP 504
            LAL  F+ +++ A+ +Y W DE G   Y   PPP   K VE++ L  + S    S+ PYSVQ A KNFP+T +   +CG  C  A+AHL +RG P+TE+NP       + E F+K+TGG +EVP+L VG  +L KGYLAS+WD ALD AGYP T   G KP
Sbjct:    5 LALSIFSGVSFAAQQVYIWTDEYGNREYRDTPPPPRAKNVERRDL--DVSTIQTSELPYSVQQAVKNFPVTLW-VLDCGSVCDNARAHLLRRGVPHTEKNPQ-----ADREAFEKLTGG-VEVPVLFVGTNRL-KGYLASDWDAALDLAGYPRTPPLGFKP 155          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A4S4AWI1_9RHOO (DUF4124 domain-containing protein n=1 Tax=Azoarcus rhizosphaerae TaxID=2565932 RepID=A0A4S4AWI1_9RHOO)

HSP 1 Score: 125 bits (314), Expect = 2.720e-33
Identity = 72/165 (43.64%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    7 MKTWTLLALMGFAALAYGAE--MYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPG 495
            MK   LLA +  AA    A+   YRWVD++G +NY+  PPPA+V++VE+++    A+ A +   PY+V+ A +NFP+T Y T ECG+PC  A+  LD RG PY E       S    E ++K  G  +EVP L VG+    KG+L ++W   LD AGYP T LPG
Sbjct:    1 MKRMLLLAALLAAAPTLFAQDTTYRWVDDRGQINYSDLPPPAHVQEVERQRFKPGAADAAL---PYAVRKAAENFPVTLYVTEECGDPCDSARKLLDGRGVPYAENALD---SETAHEAYRKAIGVPVEVPALLVGRFTR-KGFLENDWQRLLDDAGYPRTALPG 158          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: A0A2U1RVF8_9PROT (Glutaredoxin family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RVF8_9PROT)

HSP 1 Score: 125 bits (315), Expect = 5.020e-33
Identity = 68/148 (45.95%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   61 AEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVLPGAKP 504
            A +YRWVD  G V+Y+  PPP   K + QK++GG  +A  V   PY+ Q+A +  P+T Y+ A+CG+PCK  +  L KRG P++ER+    A+  + E  KK+ G   EVP+L VG  K VKGY    W  ALD AGYP T LPG  P
Sbjct:   25 ANVYRWVDSNGKVHYSDTPPPEPQKNLTQKRVGGGYAADAVQ-LPYATQVAMQKSPVTLYTGADCGDPCKQGRELLSKRGIPFSERDAQ--ANADDAETLKKLVGAA-EVPVLTVGSAK-VKGYEEGAWHSALDGAGYPRTALPGQVP 167          
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Match: UPI0019CDDDAB (Glutaredoxin family protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019CDDDAB)

HSP 1 Score: 125 bits (314), Expect = 1.580e-32
Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = 1
Query:    4 IMKTWTLLALMGFAALAYGAEMYRWVDEKGTVNYTPYPPPANVKKVEQKKLGGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAPYTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGALDQAGYPSTVL 489
            ++K   L+     +A +Y A+ Y+WVDEKG  +YT  PPP    KVEQKKL  +     +   PY++Q   KNFP+T Y   +CGE C  A+  L++RG P+TE+NP    +P+E  E   +T G+  VP+LQVG+  +++G+  S+W+ ALD+AGYP T +
Sbjct:    1 MIKIALLILTCALSANSY-ADTYKWVDEKGVTHYTDQPPPPGATKVEQKKLTNSVIGTTM---PYALQQTVKNFPVTVYVN-DCGEVCNSARGLLNRRGIPFTEKNPE---NPKEQSELAALTRGSNAVPVLQVGR-SVLRGFEESQWNTALDEAGYPKTSV 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7122.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3ZWH5_9PROT7.620e-4453.13DUF4124 domain-containing protein n=1 Tax=Betaprot... [more]
A0A7C2YAM5_9PROT1.550e-4248.47Glutaredoxin family protein n=1 Tax=Betaproteobact... [more]
A0A1F4DPU7_9PROT9.920e-4250.00Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4DFD4_9PROT1.800e-4052.03Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C3JP59_9PROT2.540e-4049.69Glutaredoxin family protein n=1 Tax=Betaproteobact... [more]
A0A3N5WC82_9PROT1.930e-3847.47Glutaredoxin family protein n=1 Tax=Betaproteobact... [more]
A0A0S8C5W5_9PROT9.980e-3547.83DUF4124 domain-containing protein n=1 Tax=Betaprot... [more]
A0A4S4AWI1_9RHOO2.720e-3343.64DUF4124 domain-containing protein n=1 Tax=Azoarcus... [more]
A0A2U1RVF8_9PROT5.020e-3345.95Glutaredoxin family protein n=1 Tax=Betaproteobact... [more]
UPI0019CDDDAB1.580e-3241.98Glutaredoxin family protein n=1 Tax=Burkholderiale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7122contigP-wetherbeei_contig7122:362..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1163617.SCD_n00202
PFAMsDUF4124,Glutaredoxin
Model size570
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.34e-30
EggNOG OGsCOG0695@1|root,COG0695@2|Bacteria,1N7X3@1224|Proteobacteria,2VVPB@28216|Betaproteobacteria
DescriptionPfam Glutaredoxin
Cds size564
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.8231506-CDS-P-wetherbeei_contig7122:361..9251683186959.8231506-CDS-P-wetherbeei_contig7122:361..925Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7122 362..925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.8340983-UTR-P-wetherbeei_contig7122:925..9311683186959.8340983-UTR-P-wetherbeei_contig7122:925..931Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7122 926..931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7122.2.1prot_P-wetherbeei_contig7122.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7122 362..925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7122.2.1

>prot_P-wetherbeei_contig7122.2.1 ID=prot_P-wetherbeei_contig7122.2.1|Name=mRNA_P-wetherbeei_contig7122.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MKTWTLLALMGFAALAYGAEMYRWVDEKGTVNYTPYPPPANVKKVEQKKL
GGNASAAPVSDAPYSVQLATKNFPLTFYSTAECGEPCKLAKAHLDKRGAP
YTERNPSKPASPQEFEEFKKMTGGTLEVPMLQVGQLKLVKGYLASEWDGA
LDQAGYPSTVLPGAKPAAKPAAKPPAEPAAAAPAPAK*
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mRNA from alignment at P-wetherbeei_contig7122:362..931-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7122.2.1 ID=mRNA_P-wetherbeei_contig7122.2.1|Name=mRNA_P-wetherbeei_contig7122.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig7122:362..931- (Phaeothamnion wetherbeei SAG_119_79)
CACATCATGAAAACCTGGACATTACTTGCCTTGATGGGATTTGCGGCACT CGCCTACGGCGCGGAAATGTACCGCTGGGTCGATGAAAAGGGCACCGTCA ATTACACGCCTTACCCGCCCCCCGCCAACGTCAAGAAAGTCGAACAGAAA AAGCTCGGCGGCAATGCGAGCGCGGCGCCGGTCAGCGATGCGCCTTACAG CGTACAACTCGCAACCAAGAACTTCCCGCTTACCTTCTACTCCACCGCCG AGTGCGGCGAACCATGCAAATTGGCGAAGGCGCACCTCGATAAGCGCGGC GCGCCGTATACCGAAAGAAATCCTTCCAAGCCGGCTTCGCCCCAGGAGTT CGAGGAATTCAAGAAAATGACCGGCGGCACCCTGGAAGTGCCGATGCTGC AGGTCGGGCAACTTAAATTGGTCAAAGGCTATCTGGCGTCTGAATGGGAT GGCGCGCTTGACCAGGCGGGTTATCCAAGCACCGTGCTTCCCGGCGCCAA GCCCGCGGCCAAACCCGCCGCCAAACCGCCGGCGGAACCCGCTGCGGCCG CGCCCGCCCCCGCCAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7122:362..931-

>mRNA_P-wetherbeei_contig7122.2.1 ID=mRNA_P-wetherbeei_contig7122.2.1|Name=mRNA_P-wetherbeei_contig7122.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig7122:362..931- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAACCTGGACATTACTTGCCTTGATGGGATTTGCGGCACTCGCCTA
CGGCGCGGAAATGTACCGCTGGGTCGATGAAAAGGGCACCGTCAATTACA
CGCCTTACCCGCCCCCCGCCAACGTCAAGAAAGTCGAACAGAAAAAGCTC
GGCGGCAATGCGAGCGCGGCGCCGGTCAGCGATGCGCCTTACAGCGTACA
ACTCGCAACCAAGAACTTCCCGCTTACCTTCTACTCCACCGCCGAGTGCG
GCGAACCATGCAAATTGGCGAAGGCGCACCTCGATAAGCGCGGCGCGCCG
TATACCGAAAGAAATCCTTCCAAGCCGGCTTCGCCCCAGGAGTTCGAGGA
ATTCAAGAAAATGACCGGCGGCACCCTGGAAGTGCCGATGCTGCAGGTCG
GGCAACTTAAATTGGTCAAAGGCTATCTGGCGTCTGAATGGGATGGCGCG
CTTGACCAGGCGGGTTATCCAAGCACCGTGCTTCCCGGCGCCAAGCCCGC
GGCCAAACCCGCCGCCAAACCGCCGGCGGAACCCGCTGCGGCCGCGCCCG
CCCCCGCCAAATAA
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