mRNA_P-wetherbeei_contig7119.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7119.1.1
Unique NamemRNA_P-wetherbeei_contig7119.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A835ZBF6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 4.000e-47
Identity = 92/180 (51.11%), Postives = 119/180 (66.11%), Query Frame = 1
Query:  475 WPFDNLCVTDERITSVSSTAESYGITTDDYVYEN--CVQAPSRVWFISAKSWMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAWTGDYLAYCLCSENDLPDLTEEERLKLFSPCVMFKAD 1008
            WP + L +    +TSV+    S GI+    +Y +   +++    W +    WMTDDQK LV LY + A+V T   A  YFG  AAFS+YHLF G YKPVGD QGI YS V QIQ YVPQV +P +PHPLLAT L+ L+ +HI+W+GD+  Y LCS +DLPD+  E+R+KLFSPCV F +D
Sbjct:  502 WPHNGLQLGTGSVTSVTPDVASLGISAGSPLYTDFYVMESHHDPWKVRTGWWMTDDQKILVTLYSITAIVMTVIIAAAYFGKEAAFSIYHLFHGAYKPVGDTQGISYSDVAQIQAYVPQVSIPTIPHPLLATDLSKLNRDHISWSGDFDHYNLCSSSDLPDIKREDRVKLFSPCVHFVSD 681          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A835YVZ1_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ1_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.730e-45
Identity = 96/204 (47.06%), Postives = 123/204 (60.29%), Query Frame = 1
Query:  415 SLRGLEQLIKIIVTLHFYGGWPFDN-LCVTDERITSVSSTAESYGITTDDYVYENCVQAPS-RVWFISAKSWMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAWT---GDYLAYCLCSENDLPDLTEEERLKLFSPCVMFKADH 1011
            S   L  L+K++VTL+FY  WPFDN LC T E +T VS    + GI     VY  C    S   W+I  + WM DDQK LV LY + A+V+T   AI  FGG   + VY L+ G YKPVG  +G+PYS+V +IQ +VPQV+   LPHPLLAT ++ L T HIA+     DY  + LCSE D+P + EEER   FS C+ +   H
Sbjct:  639 SYLALAVLVKLLVTLNFYANWPFDNELCKTGETVTQVSPEVAALGIAPGATVYGYCATDVSGSPWYIFTEPWMNDDQKTLVHLYSITAIVATVLVAIFCFGGPFCYFVYRLYWGAYKPVGRAKGVPYSRVEEIQAFVPQVKFKLLPHPLLATDISRLDTHHIAFQVQDDDYQKFNLCSEADMPTIPEEERSNFFSRCINYPPAH 842          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: D7FW06_ECTSI (PHM7_cyt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW06_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.780e-30
Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  436 LIKIIVTLHFYGGWPFDNLCVTDERIT-----------------SVSSTAESYGITTDDYVYENCVQAPSRVWFISAKSWMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDD-QGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAWTGDYLAYCLCSENDLPDLTEEERLKLFSPCVMF 999
            +I ++V+L FY GWPFD LC TDE +                  +VS+   S G    D VYE C Q  S VW    + WM DDQ  +V ++ +F  V T A AI+ FG +   S+  L KGVYKPVG   + + +++V QI  YVP V   +  HP+LA  +  +   HI+WTGDY AY LC+    P ++ + R   F   V +
Sbjct:  788 VIHVMVSLQFYAGWPFDGLCPTDEVVQVNFWDEANVNFTIDGMFNVSTVLPSVG----DMVYETCDQDSSLVWGEGPQEWMPDDQLIIVFIFNLFGYVCTAAVAIILFGKTVLASLRRLCKGVYKPVGRHAKPVGFTEVQQINAYVPGVPYKKSVHPILACDIGNVDEHHISWTGDYQAYNLCTPEAFPGISRKIRANQFGRVVFY 989          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A7R9ZSN6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSN6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.920e-12
Identity = 54/173 (31.21%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  448 IVTLHFYGGWPFDNLC----------VTDERITSVSSTAESYGITTDDYVYENCVQ--------APSRVWFISAKS----WMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAW 900
            +++ +++ G+P+DNLC          V D  IT+ +       I  DD  Y  C Q        A     FI +K     WMT++Q+ +  +Y    +  +   A ++F G        LF+  YK VGDD GIP+SQV  I  Y+PQVE     +PLLA     +  E   W
Sbjct:   29 VLSSYYWSGFPYDNLCQNDTVVSSSYVGDYTITAKNGDTHQVSIVADDTDYRYCRQNLIGSGTLASPGFPFIPSKQGEDRWMTEEQETITFIYGWSTVAVSGVVAFVFFLGWLK-GWLSLFRSSYKSVGDDMGIPFSQVPSINAYIPQVESAMFSYPLLAADSDVIDEELYDW 200          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A7S2YLR8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLR8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.070e-11
Identity = 53/171 (30.99%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  448 IVTLHFYGGWPFDNLCVTDERIT------------SVSSTAESYGITTDDYVYENCVQAPSRVW-------FISAKS-----WMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTE 888
            +++ +++ G+PFDN+C  ++                 S   E     + D VY  C Q   R +       F          WMT DQ+ +  ++ + +++   A  ++  G      V   FKG Y+P G+DQ IP+SQV  I +Y+PQV  P  PHPL+ATSL T  TE
Sbjct:  197 LLSAYYWSGFPFDNICEQEDSNAFSQLNGDWTIEIKGSGDKEQVSRESSDPVYVFCRQDFFRYYDDERAFPFTPQNQPDGLEWMTSDQELVTNIWGIVSVIVIGA-VLIRLGLYCFTDVKGYFKGDYEPCGEDQNIPFSQVESITSYIPQVNSPVYPHPLVATSLDTFGTE 366          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A7S4K519_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K519_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.940e-11
Identity = 62/219 (28.31%), Postives = 95/219 (43.38%), Query Frame = 1
Query:  394 TNASTLASLRGLEQLIKIIVTLHFY--GGWPFDNLCVTDE--RITSVSSTAESYGITTDDYVYENCVQAPSRV-----------WFISAKSWMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAWTGD---YLAYCLCSENDL----PDLTEEERLKLFS 984
            T  +TL+    L   I  +  L  Y   G+P+DNLC  +E  +   V        +   +Y    C Q    +           W      WMT DQ+ + R+Y  +  V+  A   L F      S+  +F+G YKP GDDQGI +S V  I  Y+P+V +  +P PL+A+ +  L  E   W      Y  Y L  + +L     D T++   ++F+
Sbjct:  812 TRIATLSRKYFLSVAIVAMAVLGSYHWSGFPYDNLCDGEETDQYQGVWMVDGKEELVVSNYTVRYCKQDLLDLDDIIAFPALPKWQPEGDEWMTADQERITRIYG-WTSVAVLAGVCLIFIKGIITSMKDMFRGTYKPCGDDQGINFSDVKSIAAYIPEVSIAFVPFPLIASDIDGLDEELFEWENPDKPYSCYDLTRDAELLLKGTDCTKDPSKRVFT 1029          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A7S1UQA4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQA4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.140e-8
Identity = 44/174 (25.29%), Postives = 76/174 (43.68%), Query Frame = 1
Query:  439 IKIIVTLHFYGGWPFDNLCVTD-------------------ERITSVSSTAESYGITTDDYVYENCVQAPSRVWFI-SAKSWMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAW 900
            +  +V+ +++ G+PFDNLC  +                    R   ++++  ++     D +       P+   F  S   WM+ DQ+++  +Y  ++ +      +  F      +    FKG YKP GDDQ  P+S+V  I TY+PQV      +PLLA +   L  +   W
Sbjct:   55 VMAVVSSYYWAGFPFDNLCANEGTDSAEYAGNYTLKLGDGGNRTEVITASYPTFRYCLQDMILLEGPSFPAIPQFQPSGGEWMSSDQENITAIYG-WSSIGVLGLIVSSFFWQLFRNFQGCFKGQYKPAGDDQAQPFSEVPSISTYIPQVNSFVFSYPLLACNYKGLSKDLFDW 227          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A7S2V6J7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6J7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.380e-7
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 1
Query:  436 LIKIIVTLHFYGGWPFDNLCVTDERITSVSSTAESYGITTDDYVYENCVQAPSRVWF---ISAKS-WMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPH--PLLATSLTTLHTEH 891
            L+ +++T H+Y GWPFDN  ++ + +        SY          N V++  + WF   +  KS W   +Q+ LV++Y + +L       + Y       +V   + G Y  VG+ QGIPY+ V  I TYVP    P  P   PL A     L   H
Sbjct:  602 LVHLLITAHWYYGWPFDNTYLSSDGVYKYQDK-NSY----------NLVKS-GKFWFAFYVDPKSTWQNAEQQFLVKIYGIASLALLGFLLVFYLYKDIVDTVNWAWYGDYDAVGESQGIPYNAVESITTYVPMSVFPSDPTVGPLPAAYCENLMEHH 747          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A7S2VH83_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VH83_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.030e-7
Identity = 49/178 (27.53%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  448 IVTLHFYGGWPFDNLCVTDE---------RITSVSSTAESYGITTDDYVYENCVQ--APSRVWFI--------SAKSWMTDDQKHLVRLYKVFALV------STFAFAILYFGGSAAFSVYH-LFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAWT 903
            IV+ ++  G+P+DNLC  +          ++T  +    S  +  +   Y  C Q   P + +          S   WMT  Q+ LV +Y + + V      + FA+ I        F ++  LF   YKP G DQG+ +S+V  I +Y+PQV+  Q  +PLLA ++  +      W+
Sbjct:  271 IVSSYWLSGFPYDNLCADNTSHSAYYGNWQVTDGNGQTSSAVVEPNQRSYHFCNQYIGPGQNFKFPVSPDAQPSGSKWMTSSQEQLVGIYGIVSAVVLGLVCAVFAYRI--------FRLFQKLFSASYKPAGSDQGMHFSEVGTISSYIPQVKSEQFTYPLLAVNVDYVGESIFDWS 440          
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Match: A0A7S4MUB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MUB8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.370e-6
Identity = 47/196 (23.98%), Postives = 80/196 (40.82%), Query Frame = 1
Query:  436 LIKIIVTLHFYGGWPFDNLCVTDER-----------------ITSVSSTAESYGITTDDYVY----------ENCVQAPSRVWFISAKSWMTDD-------QKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPVGDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAWTGDYLAY 921
            +I  +++ +F+  +P+DN+C  D                   I   S+  +   +T  + V           E      S V  +    WMT +       Q+ L ++Y   ++V+   +    FGGS   +V  LF+G Y     D  I +S V +I  YVPQ++ P  P P+LA  +  +    I W   + +Y
Sbjct:  727 MIMAVISSYFWAQFPYDNVCSCDNTNDYTCGGQDWRGTYNDIILGNSTAIDQIEVTQKEGVIFCQQQLWRLPEFAFPPVSEVQELRQGKWMTSETWEPPGNQESLTKIYGWSSVVALAVYVAFVFGGSVISNVLLLFRGSYSTNTKDSKIDFSTVQEIFAYVPQLDFPAFPFPMLACDVDDIDQNLIGWNDPHGSY 922          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7119.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835ZBF6_9STRA4.000e-4751.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVZ1_9STRA5.730e-4547.06PPIase cyclophilin-type domain-containing protein ... [more]
D7FW06_ECTSI5.780e-3037.86PHM7_cyt domain-containing protein n=2 Tax=Ectocar... [more]
A0A7R9ZSN6_9STRA3.920e-1231.21Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2YLR8_9STRA2.070e-1130.99Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4K519_9STRA4.940e-1128.31Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1UQA4_9STRA7.140e-825.29Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2V6J7_9STRA2.380e-730.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2VH83_9STRA5.030e-727.53Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4MUB8_9STRA2.370e-623.98Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7119contigP-wetherbeei_contig7119:342..2346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW06
PFAMsPHM7_cyt
Model size1611
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.42e-33
EggNOG OGs28PFW@1|root,2QW3U@2759|Eukaryota
Cds size774
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.5641835-UTR-P-wetherbeei_contig7119:341..6561683186959.5641835-UTR-P-wetherbeei_contig7119:341..656Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7119 342..656 +
1683186959.5968902-UTR-P-wetherbeei_contig7119:1824..23461683186959.5968902-UTR-P-wetherbeei_contig7119:1824..2346Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7119 1825..2346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.5751414-CDS-P-wetherbeei_contig7119:656..9651683186959.5751414-CDS-P-wetherbeei_contig7119:656..965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7119 657..965 +
1683186959.5850284-CDS-P-wetherbeei_contig7119:1359..18241683186959.5850284-CDS-P-wetherbeei_contig7119:1359..1824Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7119 1360..1824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7119.1.1prot_P-wetherbeei_contig7119.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7119 657..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7119.1.1

>prot_P-wetherbeei_contig7119.1.1 ID=prot_P-wetherbeei_contig7119.1.1|Name=mRNA_P-wetherbeei_contig7119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MPFLPSPPAPPSAPFTLSLAETDESLTNASTLASLRGLEQLIKIIVTLHF
YGGWPFDNLCVTDERITSVSSTAESYGITTDDYVYENCVQAPSRVWFISA
KSWMTDDQKHLVRLYKVFALVSTFAFAILYFGGSAAFSVYHLFKGVYKPV
GDDQGIPYSQVHQIQTYVPQVEVPQLPHPLLATSLTTLHTEHIAWTGDYL
AYCLCSENDLPDLTEEERLKLFSPCVMFKADHTAVHDGPAAEGPHPMAVG
DVTLTIN*
back to top

mRNA from alignment at P-wetherbeei_contig7119:342..2346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7119.1.1 ID=mRNA_P-wetherbeei_contig7119.1.1|Name=mRNA_P-wetherbeei_contig7119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2005bp|location=Sequence derived from alignment at P-wetherbeei_contig7119:342..2346+ (Phaeothamnion wetherbeei SAG_119_79)
GTACTGCCTCTTCCGCATCTGGAAGAGCCCTTCGCAGCTCGACGACTCCC TCACCAAGCTGACGCGCTTCTACATCGCCCTCGCTGTGGTAAGAAAAACG ACGAAGGAGGGAGGCGGTGGTTGGTCGGTCGACGTTCCGTCTGCATCTTT CGTTTTCTCTGTAAAGGCATGAATCTGGCCGGGAATGTGCATGAGGGAAC GAAGGAGAGTGGTTGAGCACCAGGATACGAGTCGAACACTGGGCTACTGG TTCGCCGCCGAATTTCCGTTGTATCAGAGGCCAATCTGGCTTTGATCGCA GGAACGGGGTTCCAGATGCCGTTCCTCCCTTCTCCCCCTGCTCCCCCTTC TGCTCCATTTACTCTCTCTTTGGCGGAAACTGATGAATCTTTGACAAATG CTTCGACTCTTGCCTCTCTGCGCGGCCTCGAACAGCTCATCAAGATCATT GTGACGCTGCACTTCTACGGTGGCTGGCCATTCGACAACCTGTGTGTGAC TGACGAGCGCATCACGTCGGTCTCGAGCACCGCGGAGTCGTACGGTATTA CGACCGACGATTACGTGTACGAAAACTGCGTGCAGGCGCCGAGCCGTGTC TGGTTTATTTCCGCCAAATCCTGGGTAAGTGATGTCCTTTAACAATGTAT TTCGCCGCTTTCCTGGGGCTTGCTGTTGCATTTGGGTCACATCAAAGAAG GAGTGCGCAGCGATGCGCTGCAAGTAGAGCTACCGGCAGGGTTTGCATTT TGGACTTTGTTTTCTTTCTCGTCAGCTTTAGATATGGCGGTCCGTCTGCA AGTACAGTGGGAATTTGCGCTATTCTCCTTGCACGCTATGCTTTGCCAAA GCGTTCTGATGGGTTGGTTGGTCTGGTTCCCTGTTCGCTGCCATTTTCGA TCCAAAAATGGATTTCAAGTTTTGGCTTGCTGTTGTTGTGTCTCATGCTG TTTTCTCCCGCTGATGCTCTTTTATGCTGCCTACTGCAATAAATGCTTGC TGTTGCATCTGCTTGCAGATGACGGACGACCAGAAGCACCTGGTGCGGCT GTACAAGGTGTTTGCGCTAGTGTCGACCTTCGCCTTCGCCATCCTCTACT TCGGCGGCTCGGCGGCCTTCTCCGTCTACCACCTCTTCAAGGGCGTCTAC AAGCCCGTCGGCGACGACCAGGGCATCCCCTACTCGCAGGTGCACCAGAT CCAGACGTACGTGCCGCAGGTCGAGGTGCCGCAGCTGCCGCACCCACTGC TCGCCACCAGCCTGACAACGCTGCACACGGAGCACATCGCCTGGACGGGG GACTACCTGGCGTACTGCCTCTGCAGCGAGAACGACCTGCCGGACCTGAC GGAGGAGGAGCGCCTCAAGCTTTTCTCGCCGTGTGTCATGTTCAAGGCCG ACCACACCGCCGTGCATGATGGGCCTGCCGCCGAGGGCCCGCACCCCATG GCCGTCGGTGACGTCACGCTCACGATCAACTGAAGACCGAGACATCGGAG AGAGAGAGATGGGGTCTGAGGTCGGGTTGAAGGGGCAGGTTGGGTCACCG CAAGTTGGGCTGGTTTGGAGTCGGGGAAAGGGCGGATGCGGGATTATGGG GTTCGCTCTGATCTGCAGAAGAGAAGATAAAGAAGAAAGGTTTGTTTTAT CGGAAATTCGTTGGGATGGTGGGGGAGAGGGAGGTTTAGTGTCTGTGGTC TGTGCAAGGGAAGAGAAGGGGAAACGATTTACTTATTTTCTTCCTCCGGT TGCGACGACGACGACGTTGATTCAAGCGCTGCTGGCCAGTTGCGGTCCTC TGGCCGGGTGGAAGGGCGGGGAAGGACAGAGCAGCTGCAGATGAAGAATT TAGTTTATGGGTGATGGGTAGGGAGGCGCCTCACGCCTGTACCCCCTTTT GTATGTTTCGCAGGGCAGAGGGGCCGACGCGCTGTTAAGTAGCACGAATC TCTTCGTGATGCTCTCTATTCCAATTTTAGCGGTAACCATCTTTGTCTGC ATCCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7119:342..2346+

>mRNA_P-wetherbeei_contig7119.1.1 ID=mRNA_P-wetherbeei_contig7119.1.1|Name=mRNA_P-wetherbeei_contig7119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig7119:342..2346+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTCCTCCCTTCTCCCCCTGCTCCCCCTTCTGCTCCATTTACTCT
CTCTTTGGCGGAAACTGATGAATCTTTGACAAATGCTTCGACTCTTGCCT
CTCTGCGCGGCCTCGAACAGCTCATCAAGATCATTGTGACGCTGCACTTC
TACGGTGGCTGGCCATTCGACAACCTGTGTGTGACTGACGAGCGCATCAC
GTCGGTCTCGAGCACCGCGGAGTCGTACGGTATTACGACCGACGATTACG
TGTACGAAAACTGCGTGCAGGCGCCGAGCCGTGTCTGGTTTATTTCCGCC
AAATCCTGGATGACGGACGACCAGAAGCACCTGGTGCGGCTGTACAAGGT
GTTTGCGCTAGTGTCGACCTTCGCCTTCGCCATCCTCTACTTCGGCGGCT
CGGCGGCCTTCTCCGTCTACCACCTCTTCAAGGGCGTCTACAAGCCCGTC
GGCGACGACCAGGGCATCCCCTACTCGCAGGTGCACCAGATCCAGACGTA
CGTGCCGCAGGTCGAGGTGCCGCAGCTGCCGCACCCACTGCTCGCCACCA
GCCTGACAACGCTGCACACGGAGCACATCGCCTGGACGGGGGACTACCTG
GCGTACTGCCTCTGCAGCGAGAACGACCTGCCGGACCTGACGGAGGAGGA
GCGCCTCAAGCTTTTCTCGCCGTGTGTCATGTTCAAGGCCGACCACACCG
CCGTGCATGATGGGCCTGCCGCCGAGGGCCCGCACCCCATGGCCGTCGGT
GACGTCACGCTCACGATCAACTGA
back to top