mRNA_P-wetherbeei_contig7110.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7110.1.1
Unique NamemRNA_P-wetherbeei_contig7110.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7110.1.1 vs. uniprot
Match: A0A6H5KVW5_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW5_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 1.190e-45
Identity = 110/258 (42.64%), Postives = 147/258 (56.98%), Query Frame = 1 
Query:  490 VMGVKLTEDHVERLMNESGWLTSQIIDIRLLQLQAAYPENFYYNSSFFGFLCPHRDTGGSFQLDYERVRSWTNRAGRSRGDFGGXXXXXXXXXXXXXXXXXXIFNRRRLFIPINEADSHWVLVPVAIANSRSSSGXXXXXXXXXXXDG----GVATVAFFDSLGRSGAAYVEAIQEYLVAEASAKRPATTPSRYRTRAQTPPGAPRQTNSSDCGVLVLHCAERLSDAAVPITGGGAGGFRRMTQEDINQLRTSLVETL 1251
            + G+ L +DH +R+++  GWLTSQ+IDIR+ QLQ  YP++ Y++SSFFGFLCP  + GG+F +DY RV  WT ++    G                      +F+ R+LFIPIN+ + HWVLV V + +      XXXXXXXX         G   V+FFDS GR G  YVEA+Q+YLV+E S+ R  T    +  R + P  APRQ NSSDCGVL+LH  E LS        G       +TQE+I  LR  L+  +
Sbjct:  375 IRGINLQQDHFDRIVDSDGWLTSQVIDIRVKQLQERYPQHLYFDSSFFGFLCPTTEKGGAFVVDYARVAGWTKQSRLPGGK-------------------SSLFDMRKLFIPINQGNVHWVLVVVDMDSDDXXXXXXXXXXXXSDRGNVXXXGAKVVSFFDSFGREGTPYVEAVQQYLVSELSS-RDKTRQELFTPRPRPPDNAPRQHNSSDCGVLMLHVMEELST-------GPTDALAPLTQEEIQSLRLVLIANI 605
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7110.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVW5_9PHAE1.190e-4542.64ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7110contigP-wetherbeei_contig7110:967..2370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009038845.1
PFAMsPeptidase_C48
Model size1260
Max annot lvl2759|Eukaryota
KEGG koko:K08592
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.8e-08
EggNOG OGsCOG5160@1|root,KOG0778@2759|Eukaryota
EC3.4.22.68
Descriptionprotein desumoylation
Cds size1260
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186959.088832-CDS-P-wetherbeei_contig7110:966..13681683186959.088832-CDS-P-wetherbeei_contig7110:966..1368Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7110 967..1368 -
1683186959.101855-CDS-P-wetherbeei_contig7110:1512..23701683186959.101855-CDS-P-wetherbeei_contig7110:1512..2370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7110 1513..2370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7110.1.1prot_P-wetherbeei_contig7110.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7110 967..2370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7110.1.1

>prot_P-wetherbeei_contig7110.1.1 ID=prot_P-wetherbeei_contig7110.1.1|Name=mRNA_P-wetherbeei_contig7110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=420bp
MGGAAATGSRAGGSGSGSGSASGSGSASASASGCGGSANDGSGGRQRAGP
RQTTLDEYSGDGGGGSSSGHGGVGSGSRTSSLLPSNSWANSDANSGEAGA
GVADRGHMGMRNVTRQRKSALGYCGSSSSGGFVSSLLDSDSPSLPRWGRQ
TISEAAASRVVTEVMGVKLTEDHVERLMNESGWLTSQIIDIRLLQLQAAY
PENFYYNSSFFGFLCPHRDTGGSFQLDYERVRSWTNRAGRSRGDFGGGGG
ISAGGGGGGSGGGGSIFNRRRLFIPINEADSHWVLVPVAIANSRSSSGGS
GGGSSRGGSDGGVATVAFFDSLGRSGAAYVEAIQEYLVAEASAKRPATTP
SRYRTRAQTPPGAPRQTNSSDCGVLVLHCAERLSDAAVPITGGGAGGFRR
MTQEDINQLRTSLVETLYH*
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mRNA from alignment at P-wetherbeei_contig7110:967..2370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7110.1.1 ID=mRNA_P-wetherbeei_contig7110.1.1|Name=mRNA_P-wetherbeei_contig7110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1404bp|location=Sequence derived from alignment at P-wetherbeei_contig7110:967..2370- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGGTGCCGCTGCCACGGGAAGCCGCGCCGGCGGCAGCGGCAGCGG
CAGCGGCAGCGCCAGCGGCAGCGGCAGCGCCAGCGCCAGCGCCAGCGGTT
GTGGCGGCTCCGCCAATGACGGCAGCGGCGGACGGCAGCGCGCCGGCCCG
CGGCAGACGACTTTGGACGAGTATAGTGGCGACGGCGGCGGCGGCAGCAG
CAGCGGGCACGGCGGCGTCGGCAGCGGCAGCCGAACATCTTCCCTGCTCC
CGTCGAACTCATGGGCCAACAGCGACGCCAACAGCGGCGAGGCGGGCGCT
GGCGTTGCCGACCGCGGTCACATGGGGATGCGGAACGTCACGCGCCAGCG
AAAATCGGCTCTAGGTTATTGCGGCAGCAGCAGCAGCGGTGGCTTCGTGT
CGTCGCTGCTGGATTCGGACTCGCCATCGCTGCCACGTTGGGGCCGGCAG
ACCATTTCGGAGGCGGCGGCGTCGCGCGTCGTTACGGAGGTGATGGGCGT
CAAGCTGACGGAGGACCACGTCGAGCGGCTAATGAACGAGTCGGGCTGGC
TGACGTCGCAGATCATCGACATCCGGCTGCTGCAGCTGCAGGCGGCGTAC
CCCGAGAACTTTTACTACAACAGTTCTTTCTTCGGCTTCCTCTGCCCGCA
TAGGGACACCGGCGGCAGCTTCCAGCTGGACTACGAGCGCGTCCGCTCCT
GGACCAACCGGGCGGGGCGGAGCCGCGGCGACTTCGGCGGCGGCGGCGGG
ATCTCGGCAGGCGGTGGCGGTGGCGGCAGCGGTGGCGGCGGCAGCATCTT
CAACCGGCGCCGGCTCTTCATTCCCATCAACGAGGCCGACAGCCACTGGG
TCCTGGTCGTCGTCGACTTCGCACCGCCCGACGGCGATGCCAGCAGCGCC
GCTAGTGCGGACGGCGGCACTGCTGCTGCTGCTGCCGCTGCCGTCACTGC
TGCAACCTCCACCCGCACCCTGATCGCGCTGGATGGCGTCGAGGATGCAG
AGCCGGTGGCCATCGCCAACAGCAGGTCTTCCAGCGGCGGCAGTGGCGGC
GGGTCTTCCCGCGGCGGCAGCGATGGCGGCGTGGCGACAGTGGCATTCTT
CGACTCGCTGGGTCGCAGCGGTGCGGCCTACGTGGAGGCGATCCAGGAGT
ACCTCGTCGCCGAAGCGTCCGCGAAGCGTCCGGCGACGACCCCGTCACGC
TACCGGACGCGGGCACAGACGCCGCCAGGGGCGCCGCGGCAGACCAACAG
CAGCGACTGCGGCGTGCTGGTGCTGCACTGTGCCGAGCGGCTGTCGGACG
CCGCCGTGCCGATCACCGGCGGGGGCGCGGGCGGCTTCCGACGCATGACG
CAGGAGGACATCAACCAGCTGCGTACGTCGCTCGTCGAGACGCTCTACCA
CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7110:967..2370-

>mRNA_P-wetherbeei_contig7110.1.1 ID=mRNA_P-wetherbeei_contig7110.1.1|Name=mRNA_P-wetherbeei_contig7110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1260bp|location=Sequence derived from alignment at P-wetherbeei_contig7110:967..2370- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGGTGCCGCTGCCACGGGAAGCCGCGCCGGCGGCAGCGGCAGCGG
CAGCGGCAGCGCCAGCGGCAGCGGCAGCGCCAGCGCCAGCGCCAGCGGTT
GTGGCGGCTCCGCCAATGACGGCAGCGGCGGACGGCAGCGCGCCGGCCCG
CGGCAGACGACTTTGGACGAGTATAGTGGCGACGGCGGCGGCGGCAGCAG
CAGCGGGCACGGCGGCGTCGGCAGCGGCAGCCGAACATCTTCCCTGCTCC
CGTCGAACTCATGGGCCAACAGCGACGCCAACAGCGGCGAGGCGGGCGCT
GGCGTTGCCGACCGCGGTCACATGGGGATGCGGAACGTCACGCGCCAGCG
AAAATCGGCTCTAGGTTATTGCGGCAGCAGCAGCAGCGGTGGCTTCGTGT
CGTCGCTGCTGGATTCGGACTCGCCATCGCTGCCACGTTGGGGCCGGCAG
ACCATTTCGGAGGCGGCGGCGTCGCGCGTCGTTACGGAGGTGATGGGCGT
CAAGCTGACGGAGGACCACGTCGAGCGGCTAATGAACGAGTCGGGCTGGC
TGACGTCGCAGATCATCGACATCCGGCTGCTGCAGCTGCAGGCGGCGTAC
CCCGAGAACTTTTACTACAACAGTTCTTTCTTCGGCTTCCTCTGCCCGCA
TAGGGACACCGGCGGCAGCTTCCAGCTGGACTACGAGCGCGTCCGCTCCT
GGACCAACCGGGCGGGGCGGAGCCGCGGCGACTTCGGCGGCGGCGGCGGG
ATCTCGGCAGGCGGTGGCGGTGGCGGCAGCGGTGGCGGCGGCAGCATCTT
CAACCGGCGCCGGCTCTTCATTCCCATCAACGAGGCCGACAGCCACTGGG
TCCTGGTCCCGGTGGCCATCGCCAACAGCAGGTCTTCCAGCGGCGGCAGT
GGCGGCGGGTCTTCCCGCGGCGGCAGCGATGGCGGCGTGGCGACAGTGGC
ATTCTTCGACTCGCTGGGTCGCAGCGGTGCGGCCTACGTGGAGGCGATCC
AGGAGTACCTCGTCGCCGAAGCGTCCGCGAAGCGTCCGGCGACGACCCCG
TCACGCTACCGGACGCGGGCACAGACGCCGCCAGGGGCGCCGCGGCAGAC
CAACAGCAGCGACTGCGGCGTGCTGGTGCTGCACTGTGCCGAGCGGCTGT
CGGACGCCGCCGTGCCGATCACCGGCGGGGGCGCGGGCGGCTTCCGACGC
ATGACGCAGGAGGACATCAACCAGCTGCGTACGTCGCTCGTCGAGACGCT
CTACCACTGA
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