mRNA_P-wetherbeei_contig7108.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7108.1.1
Unique NamemRNA_P-wetherbeei_contig7108.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7108.1.1 vs. uniprot
Match: D8LTM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM5_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.490e-12
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 RKATPERDSVDGGMSFSIGRSATGR-------PSLTVRRIEEGQEIRKVFAERIVVRAVVKAV---DALPGAEIASVLH 207
            +K T ER S DGG+ F+I    +G        P+L +RRI EGQEIRK+FAERIVV+AVVK++    A PG ++ +VLH
Sbjct:   74 KKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLH 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTM5_ECTSI2.490e-1250.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7108contigP-wetherbeei_contig7108:127..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTM5
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.08e-13
EggNOG OGs2EA7H@1|root,2SGGG@2759|Eukaryota
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.9413586-CDS-P-wetherbeei_contig7108:126..3331683186958.9413586-CDS-P-wetherbeei_contig7108:126..333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7108 127..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7108.1.1prot_P-wetherbeei_contig7108.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7108 127..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7108.1.1

>prot_P-wetherbeei_contig7108.1.1 ID=prot_P-wetherbeei_contig7108.1.1|Name=mRNA_P-wetherbeei_contig7108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
RKATPERDSVDGGMSFSIGRSATGRPSLTVRRIEEGQEIRKVFAERIVVR
AVVKAVDALPGAEIASVLH
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mRNA from alignment at P-wetherbeei_contig7108:127..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7108.1.1 ID=mRNA_P-wetherbeei_contig7108.1.1|Name=mRNA_P-wetherbeei_contig7108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig7108:127..333+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAAGGCAACGCCGGAAAGGGACTCAGTGGATGGCGGCATGTCCTTCAG
CATCGGCCGCAGCGCGACAGGACGGCCCTCGCTGACGGTCCGACGGATCG
AGGAAGGCCAGGAGATCCGGAAAGTGTTCGCTGAGCGAATCGTTGTGCGG
GCGGTGGTCAAGGCCGTGGACGCGCTGCCTGGGGCAGAAATTGCCTCTGT
CCTCCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7108:127..333+

>mRNA_P-wetherbeei_contig7108.1.1 ID=mRNA_P-wetherbeei_contig7108.1.1|Name=mRNA_P-wetherbeei_contig7108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig7108:127..333+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAAGGCAACGCCGGAAAGGGACTCAGTGGATGGCGGCATGTCCTTCAG
CATCGGCCGCAGCGCGACAGGACGGCCCTCGCTGACGGTCCGACGGATCG
AGGAAGGCCAGGAGATCCGGAAAGTGTTCGCTGAGCGAATCGTTGTGCGG
GCGGTGGTCAAGGCCGTGGACGCGCTGCCTGGGGCAGAAATTGCCTCTGT
CCTCCAT
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