mRNA_P-wetherbeei_contig7103.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7103.2.1
Unique NamemRNA_P-wetherbeei_contig7103.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7103.2.1 vs. uniprot
Match: A0A7S1FWN6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWN6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.710e-7
Identity = 36/97 (37.11%), Postives = 47/97 (48.45%), Query Frame = 3 
Query:  693 DQEEASCPYISPAALRDQLEELLQRHSEKAFTLQGMLQLAPTLLWNLWWLCARFGLPLPLPPHPGGYP------------ANEAWVLVGAWDRLTAQ 947
            D+E+    Y+SPAA+R QLE  + +H E       + QL   L +N WW CARF LPLPLP      P            A +  +   AWDR  A+
Sbjct: 1782 DEEQGYVMYMSPAAVRVQLESYVAKHGESVLDRDTLHQLDKRLFYNFWWFCARFSLPLPLPVEHSSCPDMTEKKTVQSSSAKKHLLAFAAWDRTVAE 1878
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BLAST of mRNA_P-wetherbeei_contig7103.2.1 vs. uniprot
Match: A0A7S0KWU1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KWU1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.550e-5
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 3 
Query:  690 SDQEEASCPYISPAALRDQLEELLQRHSEKAFTLQGMLQLAPTLLWNLWWLCARFGLPLPLPPHP------GGYPANEA--WVLVGAWDRLTAQR 950
            SDQ+ +   Y+SP ++R+ LE  +    E+      + +L P L +NLWW CARF LP PLP +       G    +E   +    AW++  A+R
Sbjct:   76 SDQDASFVTYLSPVSMRESLERHVNEQGEEILQRDKLRELDPELFFNLWWYCARFSLPFPLPVYASNSSGQGDSEKSETKHYCAYAAWNKSIAER 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7103.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1FWN6_9STRA3.710e-737.11Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0KWU1_9STRA1.550e-533.68Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7103contigP-wetherbeei_contig7103:68..3069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3002
Hectar predicted targeting categoryother localisation
Exons1
Cds size2376
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.7312417-UTR-P-wetherbeei_contig7103:67..1651683186958.7312417-UTR-P-wetherbeei_contig7103:67..165Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7103 68..165 +
1683186958.767559-UTR-P-wetherbeei_contig7103:2541..30691683186958.767559-UTR-P-wetherbeei_contig7103:2541..3069Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7103 2542..3069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186958.7420526-CDS-P-wetherbeei_contig7103:165..25411683186958.7420526-CDS-P-wetherbeei_contig7103:165..2541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7103 166..2541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7103.2.1prot_P-wetherbeei_contig7103.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7103 166..2541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7103.2.1

>prot_P-wetherbeei_contig7103.2.1 ID=prot_P-wetherbeei_contig7103.2.1|Name=mRNA_P-wetherbeei_contig7103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=792bp
MTATAAFLTGDDPTANGHGPLFVRTRTGSGGVFSGWLREVGGLLPIFGPR
RTSSQSMHTKRRSDLMWSTAQQASASAGATGHIGDGGAGAAASASSSSAA
VSGAPGGAKPTGRRPSAAAVMAVASAAMAAASAAAAASRSANVAAATSAA
AAGASSAAPSSGQKGAAAAAGSAAACSAVTAGAAGSQIAADFESGGGSDQ
EEASCPYISPAALRDQLEELLQRHSEKAFTLQGMLQLAPTLLWNLWWLCA
RFGLPLPLPPHPGGYPANEAWVLVGAWDRLTAQRAGGGVLAALESAAADY
KESGRLAPVQKGARSYGELSAAGGGGGAGGGGAGGGGDNGGSGSSGDAGA
GGKDLLSVHPLLGPRCAAAEREVRLEAVRRVPGMAEAAAAAEIDEVPMVR
CAKLFVSAVGGGASGAAGTNGEWKRREPGLYRSLLLAATAPAPPTTRQLP
PHYHGRSGGGGGGAANAQTRLATTRSCIPSPLGIDKEHQPSAAIAAAGGG
TAATTGFAPGAAGRGVAGTALVEGSGKGGNAQLQSPAGSVKRDASTAAAP
RGPLLLPEGEAPRHPHGGGGSGPEKLAVQVTSAVGGAGAADAPTCRGKQR
RAGPAMDGSGGSGGDGSASGGGFRSPSRSPAARLRNMVFGSPRGSSSPAP
TAAGGLAVTPAGFATGAANAARAAADGLVQPAGTAEQTPTSVAATSPMVA
SAAAAAAAATAAVGVASVAAPAAAGAAAATARASRRRRNHLPALDVRPPF
DVSFTRVLATLSVAEAEALLPADRGPSDQALAYRSVFGHLY*
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mRNA from alignment at P-wetherbeei_contig7103:68..3069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7103.2.1 ID=mRNA_P-wetherbeei_contig7103.2.1|Name=mRNA_P-wetherbeei_contig7103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3002bp|location=Sequence derived from alignment at P-wetherbeei_contig7103:68..3069+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCGCACCTGCAGGCACGGTGCGGCTCGACACCGCTGCTGCAACAGCAG
CAGCCGTCGGAAGCGGAAACAGCGTCGCGCCCGGACGGCGCCGCGGCGAT
GACGGCGACGGCGGCCTTTTTGACTGGGGACGATCCCACCGCGAACGGGC
ACGGACCCCTCTTCGTCCGCACGAGGACCGGAAGTGGGGGCGTTTTCTCG
GGGTGGCTGAGGGAAGTCGGCGGCCTCCTACCGATTTTCGGCCCCCGGCG
GACTTCGTCGCAGTCCATGCACACCAAGCGTCGCTCGGACCTCATGTGGA
GCACTGCCCAGCAGGCCAGCGCCAGCGCAGGCGCCACGGGGCACATCGGA
GATGGAGGCGCCGGCGCCGCCGCCTCCGCATCATCGTCTTCGGCGGCGGT
GTCTGGCGCGCCCGGTGGGGCGAAGCCGACCGGACGGCGGCCGTCCGCGG
CGGCGGTGATGGCGGTGGCATCGGCTGCGATGGCGGCGGCTTCGGCTGCG
GCCGCGGCGAGCCGAAGCGCCAATGTGGCGGCAGCAACATCAGCAGCGGC
GGCAGGCGCTTCCTCGGCGGCACCGAGCTCTGGACAGAAAGGAGCCGCAG
CCGCCGCCGGCAGCGCCGCTGCGTGCTCGGCGGTCACGGCGGGCGCGGCG
GGTTCCCAGATCGCCGCCGACTTCGAGAGCGGCGGCGGCAGCGACCAGGA
GGAAGCATCCTGCCCTTATATTAGCCCGGCAGCACTGCGCGACCAGCTGG
AGGAGTTGTTGCAGCGCCACAGCGAGAAGGCCTTCACGTTGCAAGGCATG
CTGCAGCTGGCGCCGACGCTTCTCTGGAACCTCTGGTGGCTCTGCGCGCG
CTTCGGCCTGCCACTGCCGCTTCCGCCGCACCCGGGGGGTTACCCGGCGA
ACGAAGCGTGGGTGCTGGTCGGCGCGTGGGACCGGTTGACGGCGCAGCGG
GCCGGAGGTGGCGTCCTGGCGGCGCTTGAGTCCGCGGCCGCCGATTACAA
GGAGAGCGGCCGTTTGGCGCCCGTGCAAAAGGGCGCAAGGTCTTACGGCG
AACTTAGCGCTGCCGGTGGCGGCGGCGGCGCTGGCGGCGGCGGCGCTGGC
GGCGGCGGTGATAACGGCGGCAGCGGCAGCAGTGGTGACGCCGGGGCGGG
CGGCAAGGACCTGCTCTCGGTGCACCCGTTGCTGGGGCCGCGCTGCGCTG
CCGCCGAGCGTGAGGTACGGCTGGAGGCGGTCCGTCGAGTGCCCGGCATG
GCGGAGGCAGCTGCGGCGGCGGAGATCGACGAGGTGCCCATGGTGCGCTG
TGCCAAGCTCTTCGTCTCCGCCGTCGGGGGCGGAGCATCCGGGGCGGCAG
GGACAAATGGAGAGTGGAAGAGAAGGGAACCAGGTTTGTACCGGTCCCTG
CTGCTGGCGGCGACGGCGCCGGCGCCGCCCACGACGCGGCAGCTGCCGCC
GCACTACCACGGGCGCTCTGGCGGCGGCGGCGGTGGCGCCGCGAATGCGC
AGACTCGCCTCGCGACAACGCGGTCGTGCATACCGTCGCCGTTGGGGATT
GACAAGGAGCACCAGCCGAGCGCGGCCATTGCTGCCGCCGGCGGGGGCAC
TGCCGCCACTACAGGGTTTGCCCCTGGCGCTGCGGGGAGAGGGGTGGCTG
GAACGGCACTGGTGGAAGGAAGTGGGAAGGGAGGAAATGCCCAGCTGCAG
TCGCCGGCCGGTAGCGTGAAGCGGGACGCTTCTACCGCTGCTGCGCCGCG
GGGCCCGTTGTTGCTCCCCGAGGGCGAAGCGCCACGCCACCCCCACGGCG
GCGGCGGCAGCGGTCCAGAAAAGCTCGCCGTGCAGGTCACGAGTGCTGTC
GGTGGCGCTGGCGCTGCCGACGCGCCAACTTGCCGCGGCAAGCAGCGCCG
GGCGGGGCCCGCGATGGATGGCAGCGGCGGCAGCGGTGGCGACGGCAGCG
CCAGCGGTGGCGGTTTCCGGTCGCCGTCGCGGTCTCCCGCCGCACGGCTG
CGAAATATGGTCTTTGGCTCCCCGAGGGGTTCATCGTCGCCCGCCCCGAC
AGCGGCCGGCGGGCTGGCAGTCACGCCTGCTGGCTTTGCTACTGGCGCGG
CAAACGCTGCCCGGGCGGCAGCAGACGGGCTGGTGCAGCCGGCTGGCACG
GCCGAGCAGACTCCGACTTCTGTCGCGGCAACATCGCCAATGGTGGCATC
GGCGGCGGCGGCGGCGGCGGCAGCGACGGCAGCGGTTGGAGTGGCGTCAG
TGGCAGCACCGGCGGCGGCGGGAGCGGCGGCGGCGACGGCACGGGCGTCG
AGGCGGCGGCGGAACCACCTGCCGGCGCTTGATGTCCGGCCGCCGTTCGA
CGTAAGCTTCACGCGGGTGCTGGCAACGCTGTCGGTGGCGGAGGCGGAGG
CGCTGCTGCCGGCAGACCGCGGGCCGTCGGACCAGGCGCTCGCCTACCGG
AGCGTCTTTGGTCACCTCTACTGAAGAAGCGAAAACGGCGGTCGGATCGA
TGATTGCCCAGCAAGATTGGAGTGGCCGAAGAAAGGAACAGCGGGCAGAG
GGGCGCATTTGCCGCTCTGTCTGCGGCATGGCAGTGTCATGCTTCTCCCG
GTGCACAGAAAAGCGGTCGAGCGGATTGCTGCGGCCTGTGGGGGAGAAGG
ACGTGAGATTGATCGACCGGGCTGGGCGGTCGGGAAGGTTGTTTAAAAAG
GAAATATAGAAGACCAACGACAAGCGGGACGACAAAAGCATACAATTTTG
GAGGCTGCGAGCGGGAGAGCAGATAAGCGAAGGCGGGGGCTGGTGTTACT
CTGAGAGAGTGTGAGGTAGGTCGAAAAAGAGAAACGTCGGCGCATTCTTA
CTGCCGGCGCGGCGCGGCGCCGCTCGACACGGCAACACGACGGCCGGCCT
GGCCGCGGCATGGCGCGCGACGGCCGATCGATCCATCATAATAGCAAAAG
GGCCGTGCCCCGAAGCCGGGAGCCAACCCGCCACAGGCAGGAGCAAGAGA
CA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7103:68..3069+

>mRNA_P-wetherbeei_contig7103.2.1 ID=mRNA_P-wetherbeei_contig7103.2.1|Name=mRNA_P-wetherbeei_contig7103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2376bp|location=Sequence derived from alignment at P-wetherbeei_contig7103:68..3069+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGACGGCGGCCTTTTTGACTGGGGACGATCCCACCGCGAACGG
GCACGGACCCCTCTTCGTCCGCACGAGGACCGGAAGTGGGGGCGTTTTCT
CGGGGTGGCTGAGGGAAGTCGGCGGCCTCCTACCGATTTTCGGCCCCCGG
CGGACTTCGTCGCAGTCCATGCACACCAAGCGTCGCTCGGACCTCATGTG
GAGCACTGCCCAGCAGGCCAGCGCCAGCGCAGGCGCCACGGGGCACATCG
GAGATGGAGGCGCCGGCGCCGCCGCCTCCGCATCATCGTCTTCGGCGGCG
GTGTCTGGCGCGCCCGGTGGGGCGAAGCCGACCGGACGGCGGCCGTCCGC
GGCGGCGGTGATGGCGGTGGCATCGGCTGCGATGGCGGCGGCTTCGGCTG
CGGCCGCGGCGAGCCGAAGCGCCAATGTGGCGGCAGCAACATCAGCAGCG
GCGGCAGGCGCTTCCTCGGCGGCACCGAGCTCTGGACAGAAAGGAGCCGC
AGCCGCCGCCGGCAGCGCCGCTGCGTGCTCGGCGGTCACGGCGGGCGCGG
CGGGTTCCCAGATCGCCGCCGACTTCGAGAGCGGCGGCGGCAGCGACCAG
GAGGAAGCATCCTGCCCTTATATTAGCCCGGCAGCACTGCGCGACCAGCT
GGAGGAGTTGTTGCAGCGCCACAGCGAGAAGGCCTTCACGTTGCAAGGCA
TGCTGCAGCTGGCGCCGACGCTTCTCTGGAACCTCTGGTGGCTCTGCGCG
CGCTTCGGCCTGCCACTGCCGCTTCCGCCGCACCCGGGGGGTTACCCGGC
GAACGAAGCGTGGGTGCTGGTCGGCGCGTGGGACCGGTTGACGGCGCAGC
GGGCCGGAGGTGGCGTCCTGGCGGCGCTTGAGTCCGCGGCCGCCGATTAC
AAGGAGAGCGGCCGTTTGGCGCCCGTGCAAAAGGGCGCAAGGTCTTACGG
CGAACTTAGCGCTGCCGGTGGCGGCGGCGGCGCTGGCGGCGGCGGCGCTG
GCGGCGGCGGTGATAACGGCGGCAGCGGCAGCAGTGGTGACGCCGGGGCG
GGCGGCAAGGACCTGCTCTCGGTGCACCCGTTGCTGGGGCCGCGCTGCGC
TGCCGCCGAGCGTGAGGTACGGCTGGAGGCGGTCCGTCGAGTGCCCGGCA
TGGCGGAGGCAGCTGCGGCGGCGGAGATCGACGAGGTGCCCATGGTGCGC
TGTGCCAAGCTCTTCGTCTCCGCCGTCGGGGGCGGAGCATCCGGGGCGGC
AGGGACAAATGGAGAGTGGAAGAGAAGGGAACCAGGTTTGTACCGGTCCC
TGCTGCTGGCGGCGACGGCGCCGGCGCCGCCCACGACGCGGCAGCTGCCG
CCGCACTACCACGGGCGCTCTGGCGGCGGCGGCGGTGGCGCCGCGAATGC
GCAGACTCGCCTCGCGACAACGCGGTCGTGCATACCGTCGCCGTTGGGGA
TTGACAAGGAGCACCAGCCGAGCGCGGCCATTGCTGCCGCCGGCGGGGGC
ACTGCCGCCACTACAGGGTTTGCCCCTGGCGCTGCGGGGAGAGGGGTGGC
TGGAACGGCACTGGTGGAAGGAAGTGGGAAGGGAGGAAATGCCCAGCTGC
AGTCGCCGGCCGGTAGCGTGAAGCGGGACGCTTCTACCGCTGCTGCGCCG
CGGGGCCCGTTGTTGCTCCCCGAGGGCGAAGCGCCACGCCACCCCCACGG
CGGCGGCGGCAGCGGTCCAGAAAAGCTCGCCGTGCAGGTCACGAGTGCTG
TCGGTGGCGCTGGCGCTGCCGACGCGCCAACTTGCCGCGGCAAGCAGCGC
CGGGCGGGGCCCGCGATGGATGGCAGCGGCGGCAGCGGTGGCGACGGCAG
CGCCAGCGGTGGCGGTTTCCGGTCGCCGTCGCGGTCTCCCGCCGCACGGC
TGCGAAATATGGTCTTTGGCTCCCCGAGGGGTTCATCGTCGCCCGCCCCG
ACAGCGGCCGGCGGGCTGGCAGTCACGCCTGCTGGCTTTGCTACTGGCGC
GGCAAACGCTGCCCGGGCGGCAGCAGACGGGCTGGTGCAGCCGGCTGGCA
CGGCCGAGCAGACTCCGACTTCTGTCGCGGCAACATCGCCAATGGTGGCA
TCGGCGGCGGCGGCGGCGGCGGCAGCGACGGCAGCGGTTGGAGTGGCGTC
AGTGGCAGCACCGGCGGCGGCGGGAGCGGCGGCGGCGACGGCACGGGCGT
CGAGGCGGCGGCGGAACCACCTGCCGGCGCTTGATGTCCGGCCGCCGTTC
GACGTAAGCTTCACGCGGGTGCTGGCAACGCTGTCGGTGGCGGAGGCGGA
GGCGCTGCTGCCGGCAGACCGCGGGCCGTCGGACCAGGCGCTCGCCTACC
GGAGCGTCTTTGGTCACCTCTACTGA
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