mRNA_P-wetherbeei_contig7090.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7090.1.1
Unique NamemRNA_P-wetherbeei_contig7090.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.640e-33
Identity = 61/108 (56.48%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEVSD 330
            ++AEL EY  D+D  +AR+A+RA+GKICLR P +AA  +ERL+  + +D+ YV+AE V V++ LL ++P WRT VLPSL RCL+ +DEP GKAAV+WMVGEYG E+++
Sbjct:  379 IIAELGEYAGDMDHLLARQAMRAVGKICLRLPGSAAAAIERLIDLMGMDVSYVKAEAVQVVEVLLRKYPQWRTEVLPSLQRCLKHIDEPAGKAAVIWMVGEYGEEITE 486
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A7S1C8U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8U9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.220e-32
Identity = 62/109 (56.88%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    4 QVVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEVSD 330
            ++VAELSEYVSDVDAEMAR AIRA+G++ +R P A   ++E L+   ELD+ YVR ETV+VMQ LL R+P+  T V+PS++R L+++D+P GKA+V+WM+GEYG  ++D
Sbjct:  355 EIVAELSEYVSDVDAEMARHAIRAIGQLVVRVPEAGGRVIETLLELNELDVDYVRGETVMVMQDLLRRYPSKATEVVPSMNRTLKKIDDPTGKASVIWMIGEYGHLIAD 463
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.790e-32
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    4 QVVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRV-DEPDGKAAVVWMVGEYGAEVSD 330
            +V+AEL+EY    DA+MARR++RA+G+IC R P  A+  +  L+ FLE+D GYVRAE  L +Q LL R+PAWR  VLPSL RCL+R  DEP GKAA++WMVGEYGAE+ +
Sbjct:  391 EVLAELAEYAGGADADMARRSVRAIGEICHRVPEGASLGMGHLLEFLEVDAGYVRAEAALAVQDLLRRYPAWRDQVLPSLRRCLKRAGDEPAGKAALIWMVGEYGAEIPE 500
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A4D9CWN1_9STRA (B2-adapt-app_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWN1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.090e-25
Identity = 55/106 (51.89%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDE-PDGKAAVVWMVGEYGAE 321
            +VAEL+EY +DVD E++RR+IRA+G I  R P AA  I+ERLV FL++D+  +R ET+LVM+ +L R+P  +   LP L  C+RRVD  P+ +AA++WM GEYG +
Sbjct:  376 IVAELAEYATDVDQEVSRRSIRAIGNIAFRLPSAAGMILERLVGFLDVDMNSIRPETILVMRDILRRYPERKAEALPRLQSCMRRVDNHPEAQAALIWMTGEYGGK 481
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A7R9U8Z4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8Z4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.760e-25
Identity = 54/108 (50.00%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEVSD 330
            +V EL+E VSD + EMARR+IRA+ KI LR P     + ++++ FL+LD+ YV+AE    M+ LL +HP  R  VLP+L + LR + EP+G+AA+VW+VGEYGAE  +
Sbjct:  386 IVGELAEMVSDANPEMARRSIRAIAKIGLRLPDGVGVVFDKMLQFLDLDVDYVQAEASKAMRDLLRKHPERRADVLPTLCKVLRSISEPEGRAAIVWIVGEYGAETKE 493
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A7S4RGM6_9DINO (AP complex subunit beta n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RGM6_9DINO)

HSP 1 Score: 105 bits (261), Expect = 6.160e-24
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEVSD 330
            VV+ELSEYV+DVDAE++RRAIRA+GKI +R P  A  IV  L + LELDI YV  E  +VM+ L+ ++P        ++ RC++ V EP+GK AV+W++GEYG  + D
Sbjct:  362 VVSELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAEMIVGSLTSLLELDIDYVSTEAAVVMKDLVRKYPQQFQRASGAVERCMKIVSEPEGKCAVLWILGEYGLLIED 469
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A7S1KWR4_ALECA (AP complex subunit beta n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S1KWR4_ALECA)

HSP 1 Score: 104 bits (259), Expect = 1.150e-23
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEVSD 330
            +VAELSEYV+DVD E++RRAIRA+GKI +R P  A  IV  L + LELDI YV  E  +VM+ L+ ++P        ++ RC++ V EP+GK AV+W++GEYG  + D
Sbjct:  426 IVAELSEYVTDVDVEISRRAIRAIGKIAVRVPSTAELIVGSLTSLLELDIDYVSTEAAVVMKDLVRKYPQQFQRASGAVERCIKIVSEPEGKCAVLWILGEYGLLIED 533
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A7S3SC85_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SC85_9SPIT)

HSP 1 Score: 102 bits (253), Expect = 1.200e-23
Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEVSD 330
            ++ ELSEYV+DVDAE++RRAIRA+GKI +R P  A  IV  L   LELDI YV  E  +VM+ L+ ++P        ++ RC++ V EP+GK AV+W++GEYG  + D
Sbjct:   46 IIGELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAELIVGSLTNLLELDIDYVSTEAAVVMKDLVRKYPQQFQRASGAVERCIKIVAEPEGKCAVLWILGEYGLLIED 153
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A7S2SSW9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSW9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.560e-23
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVA-AATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEV 324
            ++ ELS YVS+VD  +AR AI+A+GK+  + P        E+LV  L+LDI YVRAE +LV++ LL R+P     VLP L RCL+ VDEP+ KAAV+WM+GEYG E+
Sbjct:  365 ILEELSVYVSEVDVGLARSAIQAIGKVGFKLPSGFEGAAFEKLVELLDLDIDYVRAEALLVLKDLLRRYPERHASVLPILPRCLQEVDEPESKAAVLWMLGEYGEEI 471
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BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Match: A0A812LET1_9DINO (BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812LET1_9DINO)

HSP 1 Score: 103 bits (256), Expect = 2.110e-23
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    7 VVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLELDIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWMVGEYGAEVSD 330
            VV ELSEYV+DVDAE+ARRAIRA+GKI +  P  +  IV  L   LELDI YV  E  +VM+ L+ ++P        ++ +CLR V EPDGK+A++W++GEYG  + D
Sbjct:   43 VVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTGLLELDIDYVCTEAAVVMKDLVRKYPEQFQQASGAVQKCLRIVTEPDGKSALLWILGEYGLLIED 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7090.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH14_9PHAE7.640e-3356.48B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A7S1C8U9_9STRA5.220e-3256.88Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835YU68_9STRA6.790e-3259.09Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
A0A4D9CWN1_9STRA1.090e-2551.89B2-adapt-app_C domain-containing protein n=2 Tax=M... [more]
A0A7R9U8Z4_9STRA3.760e-2550.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4RGM6_9DINO6.160e-2450.93AP complex subunit beta n=1 Tax=Alexandrium monila... [more]
A0A7S1KWR4_ALECA1.150e-2350.00AP complex subunit beta n=2 Tax=Dinophyceae TaxID=... [more]
A0A7S3SC85_9SPIT1.200e-2349.07Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2SSW9_9STRA1.560e-2352.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812LET1_9DINO2.110e-2350.93BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7090contigP-wetherbeei_contig7090:231..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LNY8
Preferred nameAP4B1
PFAMsAdaptin_N,B2-adapt-app_C
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K12401
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
Exons1
Evalue9.17e-34
EggNOG OGsCOG5096@1|root,KOG1061@2759|Eukaryota
Ec32 ortholog descriptionCoatomer protein complex, beta sub-unit
Ec32 orthologEc-14_005780.1
Descriptionclathrin binding
Cds size345
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186957.456284-CDS-P-wetherbeei_contig7090:230..5751683186957.456284-CDS-P-wetherbeei_contig7090:230..575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7090 231..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7090.1.1prot_P-wetherbeei_contig7090.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7090 231..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7090.1.1

>prot_P-wetherbeei_contig7090.1.1 ID=prot_P-wetherbeei_contig7090.1.1|Name=mRNA_P-wetherbeei_contig7090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
QQVVAELSEYVSDVDAEMARRAIRALGKICLRAPVAAATIVERLVAFLEL
DIGYVRAETVLVMQQLLLRHPAWRTGVLPSLHRCLRRVDEPDGKAAVVWM
VGEYGAEVSDTIVI*
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mRNA from alignment at P-wetherbeei_contig7090:231..575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7090.1.1 ID=mRNA_P-wetherbeei_contig7090.1.1|Name=mRNA_P-wetherbeei_contig7090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig7090:231..575+ (Phaeothamnion wetherbeei SAG_119_79)
CAACAGGTGGTGGCAGAGCTGAGCGAGTACGTGAGCGATGTGGACGCCGA
GATGGCCCGCCGCGCCATCCGCGCCCTCGGGAAGATATGCCTGCGCGCTC
CTGTGGCCGCCGCCACTATCGTCGAGCGGCTCGTGGCCTTCCTCGAGCTC
GACATCGGCTACGTCCGTGCCGAGACAGTGCTCGTCATGCAGCAGCTGCT
GCTGCGGCACCCGGCCTGGCGGACGGGCGTGCTGCCCAGCCTGCACCGCT
GCCTGCGGCGGGTGGACGAGCCGGACGGCAAGGCGGCCGTCGTGTGGATG
GTCGGCGAGTACGGCGCCGAGGTAAGCGATACAATCGTCATTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7090:231..575+

>mRNA_P-wetherbeei_contig7090.1.1 ID=mRNA_P-wetherbeei_contig7090.1.1|Name=mRNA_P-wetherbeei_contig7090.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig7090:231..575+ (Phaeothamnion wetherbeei SAG_119_79)
CAACAGGTGGTGGCAGAGCTGAGCGAGTACGTGAGCGATGTGGACGCCGA
GATGGCCCGCCGCGCCATCCGCGCCCTCGGGAAGATATGCCTGCGCGCTC
CTGTGGCCGCCGCCACTATCGTCGAGCGGCTCGTGGCCTTCCTCGAGCTC
GACATCGGCTACGTCCGTGCCGAGACAGTGCTCGTCATGCAGCAGCTGCT
GCTGCGGCACCCGGCCTGGCGGACGGGCGTGCTGCCCAGCCTGCACCGCT
GCCTGCGGCGGGTGGACGAGCCGGACGGCAAGGCGGCCGTCGTGTGGATG
GTCGGCGAGTACGGCGCCGAGGTAAGCGATACAATCGTCATTTGA
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