mRNA_P-wetherbeei_contig7089.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7089.1.1
Unique NamemRNA_P-wetherbeei_contig7089.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A067CRM7_SAPPC (HIG1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRM7_SAPPC)

HSP 1 Score: 102 bits (255), Expect = 7.550e-26
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            Q AN VYDYPFRT+V +AAP++G I  ++SR + +++FSQKVMHTR+YGQGS + +L+ TMAFHDWM K GRFE
Sbjct:  106 QAANYVYDYPFRTLVCSAAPLVGLIFLDQSR-NANIQFSQKVMHTRIYGQGSCVVLLLGTMAFHDWMSKRGRFE 178          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A1V9YRI0_9STRA (HIG1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRI0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.720e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            +LAN VYDYPFRT+  +AAP++G I F++SR + +++FSQK+MHTR+YGQG+ + +L+STM FHDWM K GRFE
Sbjct:  111 RLANFVYDYPFRTLAFSAAPLVGLIFFDQSR-NTNIQFSQKIMHTRIYGQGACVVLLLSTMGFHDWMSKRGRFE 183          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A1V9YTB5_9STRA (HIG1 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTB5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.640e-25
Identity = 43/74 (58.11%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            ++AN VYDYPFRT+  +A P++G I   +SR + +++FSQK+MHTR+YGQG+ + +L+STMAFHDWM K GRFE
Sbjct:   49 RIANFVYDYPFRTIALSATPLVGLIYLEQSR-NANIQFSQKIMHTRIYGQGACVVLLLSTMAFHDWMSKRGRFE 121          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A1V9YRF6_9STRA (HIG1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRF6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.030e-25
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            Q AN VYDYPFRT+V +AAP++G I  ++SR + +++FSQK+MHTR+YGQGS + +L+ TMAFHDWM K GRF+
Sbjct:  106 QAANYVYDYPFRTLVCSAAPLVGLIFLDQSR-NANIQFSQKIMHTRIYGQGSCVVLLLGTMAFHDWMSKRGRFQ 178          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A067CN15_SAPPC (HIG1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CN15_SAPPC)

HSP 1 Score: 102 bits (253), Expect = 4.370e-25
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            + AN VYDYPFRT+V +A P++G I F++SR + +++FSQKVMHTR+YGQGS + +L+ TMAFHDWM K GRFE
Sbjct:  150 RAANYVYDYPFRTLVCSATPLVGLIFFDQSR-NANIQFSQKVMHTRIYGQGSCVVLLLGTMAFHDWMSKRGRFE 222          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A1V9YTN9_9STRA (HIG1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YTN9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.210e-23
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            + AN VYDYPFRT+V AAAP++  I  ++SR + +++ SQK+MHTR+YGQG  + +L+ TMAFHDWM K GRFE
Sbjct:  108 RAANYVYDYPFRTLVGAAAPMVALIYLDQSR-NANIQLSQKIMHTRIYGQGGSVVLLLGTMAFHDWMSKRGRFE 180          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A067CKK2_SAPPC (HIG1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKK2_SAPPC)

HSP 1 Score: 94.4 bits (233), Expect = 1.720e-22
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            + AN VYDYPFRT+V A  P++G I  +++R + +++FSQK+MHTR+YGQG+ + +L+STMAFHD+M K GRF+
Sbjct:  110 RTANFVYDYPFRTLVGATVPLIGCIFLDQNR-NANIQFSQKIMHTRIYGQGASVVLLLSTMAFHDYMAKRGRFQ 182          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A067CMH0_SAPPC (HIG1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CMH0_SAPPC)

HSP 1 Score: 94.0 bits (232), Expect = 2.440e-22
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            QLAN +YD PFR++   A P++G I  ++SR + +++FSQK+MHTR+YGQG+ + +L+STMAFHDWM K G FE
Sbjct:  110 QLANYIYDNPFRSLTCMATPLVGFIYLDQSR-NANIQFSQKIMHTRIYGQGACVVLLLSTMAFHDWMSKRGHFE 182          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: A0A1V9YRE7_9STRA (HIG1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRE7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.420e-22
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            +LAN VYD PFR++   AAP++G + + + R + +++FSQK+MHTR+YGQG+ + +L+STMAFHDWM K G FE
Sbjct:  106 RLANYVYDNPFRSLALTAAPLVG-VIYLDQRRNANIQFSQKIMHTRIYGQGACVVLLLSTMAFHDWMSKRGHFE 178          
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Match: W4FTG3_9STRA (HIG1 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTG3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.920e-21
Identity = 40/74 (54.05%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQGSILAILVSTMAFHDWMRKHGRFE 222
            Q AN V DYPFRT+   A P++G I  ++S  + +++FSQK+MHTR+YGQGS + +L+STMAF+D+M + GRFE
Sbjct:  116 QAANYVLDYPFRTLAVTATPLVGAIYLHQSH-NANIQFSQKIMHTRIYGQGSCVVLLLSTMAFYDYMSRRGRFE 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7089.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CRM7_SAPPC7.550e-2663.51HIG1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A1V9YRI0_9STRA1.720e-2560.81HIG1 domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A1V9YTB5_9STRA2.640e-2558.11HIG1 domain-containing protein n=1 Tax=Thraustothe... [more]
A0A1V9YRF6_9STRA3.030e-2560.81HIG1 domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A067CN15_SAPPC4.370e-2562.16HIG1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A1V9YTN9_9STRA8.210e-2358.11HIG1 domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A067CKK2_SAPPC1.720e-2255.41HIG1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A067CMH0_SAPPC2.440e-2255.41HIG1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A1V9YRE7_9STRA4.420e-2254.05HIG1 domain-containing protein n=1 Tax=Achlya hypo... [more]
W4FTG3_9STRA8.920e-2154.05HIG1 domain-containing protein (Fragment) n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7089contigP-wetherbeei_contig7089:239..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008606882.1
PFAMsENOD93,HIG_1_N
Model size249
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.75e-26
EggNOG OGs2CCEF@1|root,2S3EE@2759|Eukaryota
Ec32 ortholog descriptionHypoxia induced protein, domain
Ec32 orthologEc-06_003930.1
DescriptionHypoxia induced protein conserved region
Cds size249
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186957.2403772-CDS-P-wetherbeei_contig7089:238..3791683186957.2403772-CDS-P-wetherbeei_contig7089:238..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7089 239..379 +
1683186957.253095-CDS-P-wetherbeei_contig7089:737..8451683186957.253095-CDS-P-wetherbeei_contig7089:737..845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7089 738..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7089.1.1prot_P-wetherbeei_contig7089.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7089 239..845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7089.1.1

>prot_P-wetherbeei_contig7089.1.1 ID=prot_P-wetherbeei_contig7089.1.1|Name=mRNA_P-wetherbeei_contig7089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
QLANLVYDYPFRTVVAAAAPILGGIAFNESRAHPDMKFSQKVMHTRVYGQ
GSILAILVSTMAFHDWMRKHGRFEVDAPPASR*
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mRNA from alignment at P-wetherbeei_contig7089:239..845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7089.1.1 ID=mRNA_P-wetherbeei_contig7089.1.1|Name=mRNA_P-wetherbeei_contig7089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=607bp|location=Sequence derived from alignment at P-wetherbeei_contig7089:239..845+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGGCGAACCTCGTCTACGACTACCCGTTCCGCACCGTAGTGGCGGC GGCAGCACCAATCCTCGGTGGCATCGCCTTTAACGAGTCGCGGGCCCACC CAGACATGAAATTCTCTCAGAAAGTAATGCACACGCGCGTGGTGAGTCAG TTTTTATCTGTGCCATCCGTGCTTTGGGTGGGTAGTTCTCGGCATCTGCT GTTGGTCGGCCTGTGAGGGGACGAAATAGACAAGGTAACAGGAGACGGAG GAAAGATGTGTCTGCCGCTCTTTGCTTGGCAGAAAATACCCGGGTAAGGT TGCAGATTTGTAACGGTGCGGCCTCTGGCGCTGTGCGGAGATTTGGCGTT TTCTGCGAGATGAGGCTTCACTTTGTTCTCGCACATCGATGGTTTTCCCA CGGCAGGCTTCCATGCCCTACGCTTCATTTTTGCAATCATCTTCCCCACC CGGCTGTCTTCTTTCTTGGCCCACCCGGCTGTCTCTTATCTATTCGCAGT ACGGGCAAGGGTCCATCCTGGCGATCCTCGTCTCGACGATGGCTTTCCAC GACTGGATGCGAAAGCACGGCCGCTTCGAGGTCGACGCGCCCCCGGCTTC CCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7089:239..845+

>mRNA_P-wetherbeei_contig7089.1.1 ID=mRNA_P-wetherbeei_contig7089.1.1|Name=mRNA_P-wetherbeei_contig7089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig7089:239..845+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGGCGAACCTCGTCTACGACTACCCGTTCCGCACCGTAGTGGCGGC
GGCAGCACCAATCCTCGGTGGCATCGCCTTTAACGAGTCGCGGGCCCACC
CAGACATGAAATTCTCTCAGAAAGTAATGCACACGCGCGTGTACGGGCAA
GGGTCCATCCTGGCGATCCTCGTCTCGACGATGGCTTTCCACGACTGGAT
GCGAAAGCACGGCCGCTTCGAGGTCGACGCGCCCCCGGCTTCCCGCTGA
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