mRNA_P-wetherbeei_contig7079.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7079.1.1
Unique NamemRNA_P-wetherbeei_contig7079.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: A0A6P8IVU0_ACTTE (E3 ubiquitin-protein ligase CHFR n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IVU0_ACTTE)

HSP 1 Score: 61.6 bits (148), Expect = 2.430e-9
Identity = 34/76 (44.74%), Postives = 40/76 (52.63%), Query Frame = 1
Query:    1 EELVDAFQCTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFV-DGLIERAV 225
            EE+ D F C ICH+L   AT  L C HSFC HCL +WL         R  CP+CR P +A   H  V D  I + V
Sbjct:  363 EEMEDEFSCIICHELFIRAT-TLACSHSFCEHCLYSWLQK-------RNSCPVCRCPVQAQPVHSIVLDNAIAKMV 430          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI00096ADADE (E3 ubiquitin-protein ligase rnf8-A-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096ADADE)

HSP 1 Score: 53.5 bits (127), Expect = 1.690e-6
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 1
Query:    1 EELVDAFQCTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFVDGLIERAV 225
            E + D   C+IC +L    T+ L+C HSFC  C+ TW+         ++ CP+CR P +   P   +D  IE+ V
Sbjct:  190 EVMEDEMTCSICSELFVK-TMTLNCSHSFCKSCINTWML-------NKKICPICRTPIKDLHPTIVLDNFIEKMV 256          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI000C25453A (E3 ubiquitin-protein ligase CHFR-like isoform X5 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C25453A)

HSP 1 Score: 53.5 bits (127), Expect = 1.700e-6
Identity = 27/75 (36.00%), Postives = 38/75 (50.67%), Query Frame = 1
Query:    1 EELVDAFQCTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFVDGLIERAV 225
            EEL D  QC +C ++   AT  L+C H+FC  C+ETW          +  CP+CR    +  P   +D +IE  V
Sbjct:  256 EELQDEMQCAVCSEMFIKAT-TLNCSHTFCKFCIETWKK-------NKSACPICRTKITSMNPTLVLDNVIEMVV 322          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI001CF1F1DA (E3 ubiquitin-protein ligase rnf8-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF1F1DA)

HSP 1 Score: 53.5 bits (127), Expect = 1.730e-6
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1
Query:    1 EELVDAFQCTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECP 135
            E++ D F C IC DL   +T  L C HSFC HCL+TWL   + CP
Sbjct:  367 EQMEDEFTCIICQDLFIDST-TLSCAHSFCEHCLQTWLQKKNNCP 410          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI001F02118B (E3 ubiquitin-protein ligase RNF8-like n=3 Tax=Vespa TaxID=7443 RepID=UPI001F02118B)

HSP 1 Score: 51.6 bits (122), Expect = 8.180e-6
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 1
Query:   25 CTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFVDGLIER 219
            C++C +L   AT  L+C+H+FC HC+ TW          RR CP+CR P ++      VD  IE+
Sbjct:  385 CSVCSELFIKAT-TLNCMHTFCLHCINTWNKK-------RRECPVCRAPVKSMNRSLVVDNFIEK 441          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI0013F1940C (E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F1940C)

HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 1
Query:   25 CTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFVDGLIERAV 225
            C+IC +L   AT  L+C+H+FC HC+  W          RR CP+CR+P  +      +D  IE  +
Sbjct:  385 CSICSELFVNAT-TLNCMHTFCHHCINAWYKK-------RRDCPVCRKPVMSMNRSLVLDNFIESMI 443          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI001EAED36D (E3 ubiquitin-protein ligase RNF8-like n=2 Tax=Osmia TaxID=124287 RepID=UPI001EAED36D)

HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5
Identity = 24/67 (35.82%), Postives = 36/67 (53.73%), Query Frame = 1
Query:   25 CTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFVDGLIERAV 225
            C+IC +L   AT  L C+H+FC HC+ +W+         +R CP+CR P  A      +D  I+R +
Sbjct:  388 CSICSELFVKAT-TLHCMHTFCEHCINSWMIK-------KRECPVCRTPVSAMNRSIVLDNFIDRMI 446          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: A0A8J1U2E6_OWEFU (E3 ubiquitin-protein ligase CHFR (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U2E6_OWEFU)

HSP 1 Score: 51.2 bits (121), Expect = 1.130e-5
Identity = 26/73 (35.62%), Postives = 37/73 (50.68%), Query Frame = 1
Query:    1 EELVDAFQCTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFVDGLIER 219
            E +    QC+IC++L   AT  L+C HSFC HC+ TW+    ECP        CR    +H     +D  I++
Sbjct:  381 EMIETELQCSICNELFIQATS-LNCSHSFCYHCITTWMERKKECPN-------CRAKITSHVKSIVLDSYIDK 445          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI001DC56637 (uncharacterized protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001DC56637)

HSP 1 Score: 50.8 bits (120), Expect = 1.570e-5
Identity = 28/77 (36.36%), Postives = 37/77 (48.05%), Query Frame = 1
Query:    4 ELVDAFQCTICHDLMAGATLVLDCLHSFCGHCLETWLT--ACDECPGGRR----CCPMCREPARAHAPHPFVDGLIE 216
            +L     C+IC D++     +LDCLH+FCG CL+ W T         GR      CP CRE  RA      +  L+E
Sbjct:   13 DLEKELSCSICTDILYQPLTLLDCLHTFCGCCLQEWFTWQRASAISSGRSNHPYTCPSCRETVRATKADWRLSTLLE 89          
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Match: UPI001C9AD3B4 (E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9AD3B4)

HSP 1 Score: 50.4 bits (119), Expect = 2.090e-5
Identity = 23/64 (35.94%), Postives = 35/64 (54.69%), Query Frame = 1
Query:   25 CTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRCCPMCREPARAHAPHPFVDGLIE 216
            C++C +L   AT  L C+H+FC HC++TW+         R+ CP+CR P  +      +D  IE
Sbjct:  389 CSVCSELFVEAT-TLSCMHTFCQHCIKTWIKK-------RKECPVCRAPVASMNRSIVLDNFIE 444          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7079.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6P8IVU0_ACTTE2.430e-944.74E3 ubiquitin-protein ligase CHFR n=1 Tax=Actinia t... [more]
UPI00096ADADE1.690e-634.67E3 ubiquitin-protein ligase rnf8-A-like n=1 Tax=Ae... [more]
UPI000C25453A1.700e-636.00E3 ubiquitin-protein ligase CHFR-like isoform X5 n... [more]
UPI001CF1F1DA1.730e-651.11E3 ubiquitin-protein ligase rnf8-like n=2 Tax=Acro... [more]
UPI001F02118B8.180e-638.46E3 ubiquitin-protein ligase RNF8-like n=3 Tax=Vesp... [more]
UPI0013F1940C1.120e-535.82E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Odon... [more]
UPI001EAED36D1.120e-535.82E3 ubiquitin-protein ligase RNF8-like n=2 Tax=Osmi... [more]
A0A8J1U2E6_OWEFU1.130e-535.62E3 ubiquitin-protein ligase CHFR (Fragment) n=1 Ta... [more]
UPI001DC566371.570e-536.36uncharacterized protein n=1 Tax=Passalora fulva Ta... [more]
UPI001C9AD3B42.090e-535.94E3 ubiquitin-protein ligase RNF8-like n=1 Tax=Coll... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7079contigP-wetherbeei_contig7079:565..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_00712T0
PFAMsFHA,zf-RING_2
Model size225
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.84e-09
EggNOG OGs2CZV7@1|root,2SBTG@2759|Eukaryota
DescriptionForkhead associated domain
Cds size225
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.537853-CDS-P-wetherbeei_contig7079:564..7891683186956.537853-CDS-P-wetherbeei_contig7079:564..789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7079 565..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7079.1.1prot_P-wetherbeei_contig7079.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7079 565..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7079.1.1

>prot_P-wetherbeei_contig7079.1.1 ID=prot_P-wetherbeei_contig7079.1.1|Name=mRNA_P-wetherbeei_contig7079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
EELVDAFQCTICHDLMAGATLVLDCLHSFCGHCLETWLTACDECPGGRRC
CPMCREPARAHAPHPFVDGLIERAV
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mRNA from alignment at P-wetherbeei_contig7079:565..789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7079.1.1 ID=mRNA_P-wetherbeei_contig7079.1.1|Name=mRNA_P-wetherbeei_contig7079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig7079:565..789+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCTCGTCGATGCCTTTCAGTGCACGATCTGTCATGACTTGATGGC CGGAGCTACCCTCGTCCTCGACTGCCTCCACTCCTTCTGCGGCCATTGCC TCGAAACGTGGCTGACGGCTTGCGACGAATGCCCCGGCGGCCGCCGTTGC TGCCCCATGTGCCGCGAGCCCGCCCGGGCGCATGCGCCGCACCCCTTCGT GGACGGCCTGATCGAGCGCGCCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7079:565..789+

>mRNA_P-wetherbeei_contig7079.1.1 ID=mRNA_P-wetherbeei_contig7079.1.1|Name=mRNA_P-wetherbeei_contig7079.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig7079:565..789+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGCTCGTCGATGCCTTTCAGTGCACGATCTGTCATGACTTGATGGC
CGGAGCTACCCTCGTCCTCGACTGCCTCCACTCCTTCTGCGGCCATTGCC
TCGAAACGTGGCTGACGGCTTGCGACGAATGCCCCGGCGGCCGCCGTTGC
TGCCCCATGTGCCGCGAGCCCGCCCGGGCGCATGCGCCGCACCCCTTCGT
GGACGGCCTGATCGAGCGCGCCGTG
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