mRNA_P-wetherbeei_contig7071.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7071.1.1
Unique NamemRNA_P-wetherbeei_contig7071.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: M4BZ72_HYAAE (SMC_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZ72_HYAAE)

HSP 1 Score: 350 bits (899), Expect = 1.440e-114
Identity = 185/312 (59.29%), Postives = 235/312 (75.32%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDEALRFDERQAALAAKAAQLKAALKAKDAEMAALEGKRDGAAGKALKMAVATAEGLSKELVQ 1166
            M+IEEI++DGFKSYATRTV+SGFDP FNAITGLNGSGKSN+LD+ICFVLGI+NLSQVRA NLQELVYKQGQAGVT+A VT+VFNN+D ++SP+G E   + SV+R VV GG+NKY I+G TAQ SQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRM+ENK+ ++L+T+ KK+ KV EINS L  EI P LEKLR EK  +  W +   E++R +R  VAF++ +    +  +     +  + Q AL  +   ++  ++  + E+  L+ +RD   GK  +      E + K++V+
Sbjct:    1 MHIEEIILDGFKSYATRTVISGFDPRFNAITGLNGSGKSNVLDAICFVLGITNLSQVRANNLQELVYKQGQAGVTKASVTIVFNNQDAKASPVGYEQYEQMSVARQVVIGGRNKYLINGHTAQVSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMYENKKLAALKTMTKKEKKVEEINSILANEITPTLEKLRAEKTHYLKWAANNTEMERLQRFCVAFDYQKAQDALKNTAQHVEKMQQAQRALKEEEGHIEREIEEVEDEVEVLQQQRDKEMGKEFQQLKDNVEKIGKDVVK 312
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: W7TGS9_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGS9_9STRA)

HSP 1 Score: 365 bits (936), Expect = 2.560e-112
Identity = 199/312 (63.78%), Postives = 238/312 (76.28%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDEALRFDERQAALAAKAAQLKAALKAKDAEMAALEGKRDGAAGKALKMAVATAEGLSKELVQ 1166
            MYIEE++IDGFKSYATRTV+SGFDP FNAITGLNGSGKSNILDSICFVLGISNLS VR GNLQELVYKQGQAGVT+A  T+ FNN DK+SSP+G EH ++ SV+R VV GGKNKY I+G   Q SQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKP EILGMIEEAAGTRMFENK+Q++L+TIEKK AK+ EI   L  EI P LE+LR+E++ +  W     E+++ +R  VA ++++    V  S +E L  +  +  L      LKAA++ + AE A L   R+   GKAL+ A +  E LSKELV+
Sbjct:    1 MYIEEVIIDGFKSYATRTVVSGFDPCFNAITGLNGSGKSNILDSICFVLGISNLSHVRVGNLQELVYKQGQAGVTKATATINFNNADKKSSPVGYEHFDRISVTRQVVIGGKNKYLINGHAVQASQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPHEILGMIEEAAGTRMFENKKQAALKTIEKKAAKMSEIQKVLVNEITPTLERLRKERKHYLQWSKNNTEIEKLQRLCVAHQYTQYHEEVSRSAEELLGMETERDRLKQTVQSLKAAVQERGAEAAKLHDLREKDYGKALEKAKSKEESLSKELVK 312
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: A0A836CJQ0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ0_9STRA)

HSP 1 Score: 364 bits (934), Expect = 4.510e-112
Identity = 186/252 (73.81%), Postives = 211/252 (83.73%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDE 986
            M+IEE++IDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVR GNLQELVYKQGQAGVT+A VTLVFNNEDK+ SP+G EH ++ +++R VV GGKNKY I+G TAQ SQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRM+E K+QS+L+T+EKKQAKV EIN+ L  EI P LE+LR E+  +  W +   E +R ER  VA  F+E       S +E
Sbjct:    1 MFIEELIIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRVGNLQELVYKQGQAGVTKASVTLVFNNEDKKGSPVGYEHFDQITITRQVVIGGKNKYLINGHTAQASQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMYETKKQSALKTMEKKQAKVDEINAILADEITPTLERLRSERAHYLKWSANAAEAERLERFCVAHGFAEAQATAARSDEE 252
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: A0A1J3K720_NOCCA (Structural maintenance of chromosomes protein 2-1 (Fragment) n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3K720_NOCCA)

HSP 1 Score: 333 bits (854), Expect = 1.170e-108
Identity = 163/245 (66.53%), Postives = 207/245 (84.49%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRL 965
            M+I++I ++GFKSYATRTV+ GFDPHFNAITGLNGSGKSNILDSICFVLGI+NL QVRA NLQELVYKQGQAG+T+A V++ F+N ++  SP+G E  ++ +V+R +V GG+NKY I+G+ AQ SQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEIL M+EEAAGTRM+ENK++++L+T+EKKQ KV EIN  L+ EI+P LEKLR+EK ++  W +   EL R +R  +AFE+ + +++
Sbjct:    1 MHIKDICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQAGITKATVSVTFDNSERNKSPLGYEDNSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYENKKEAALKTLEKKQTKVDEINKLLDQEISPALEKLRKEKSQYMQWANGNAELDRLKRFCIAFEYVQAEKI 245
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: A0A565CW20_9BRAS (SMC_N domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CW20_9BRAS)

HSP 1 Score: 331 bits (849), Expect = 6.430e-108
Identity = 164/245 (66.94%), Postives = 205/245 (83.67%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRL 965
            M+I+EI ++GFKSYATRTV+SGFDPHFNAITGLNGSGKSNILDSICFVLGI+NL QVRA NLQELVYKQGQAG+T+A V++ F+N ++  SP+G E   + +V+R +V GG+NKY I+G+ AQ SQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEIL M+EEAAGTRM+ENK++++L+T+EKKQ KV EIN  L+ EI P LEKLR+EK ++  W +   EL R +R  +A E+ + +++
Sbjct:    1 MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYENKKEAALKTLEKKQTKVDEINKLLDHEILPALEKLRKEKAQYMQWANGNAELDRLKRFXIALEYVQAEKI 245
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: A0A6N2KQT2_SALVM (SMC_N domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KQT2_SALVM)

HSP 1 Score: 330 bits (847), Expect = 9.340e-108
Identity = 174/312 (55.77%), Postives = 238/312 (76.28%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDEALRFDERQAALAAKAAQLKAALKAKDAEMAALEGKRDGAAGKALKMAVATAEGLSKELVQ 1166
            MY++EI ++GFKSYATRTV+ GFDP FNAITGLNGSGKSNILDSICFVLGI+NL QVRA NLQELVYKQGQAG+T+A V++VF+N D+  SP+G E+ ++ +V+R +V GG+NKY I+G+ AQ SQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEIL M+EEAAGTRM+E K++S+L+T+EKKQ+KV EIN  L+ EI P LEKLR+E+ ++  W +   EL R +R   A+++ + +++   +  E  +   + A +   A Q++  ++ K+ E++ L  +++ + G   K      + L+++LV+
Sbjct:    1 MYVKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYENHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKESALKTLEKKQSKVVEINKLLDQEILPALEKLRKERMQYMQWANGIAELDRLKRFCTAYDYVQAEKIRDSAVGEVEQMKAKIAEIDHNADQMRLEIQQKETEVSKLTAEKEASMGGEAKTLSEKVDVLAQDLVR 312
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: A0A024U5Z4_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5Z4_9STRA)

HSP 1 Score: 351 bits (901), Expect = 1.130e-107
Identity = 180/264 (68.18%), Postives = 216/264 (81.82%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDEALRFDERQAALA 1022
            MY+EE++IDGFKSYATRTV+SGFDP FNAITGLNGSGKSNILD+ICFVLGISNL+ VRA NLQELVYKQGQAGVT+A VT++FNNED+  SP+G E   + SV+R VV GGKNKY I+G TAQ +QVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRM+ENK+QS+L+T+ KK+ KV EIN  L  EI P LEKLR+EK  +  W +   E++R  R  +A+EF++ +++  +S  E    +E+  ALA
Sbjct:    1 MYVEEVIIDGFKSYATRTVVSGFDPRFNAITGLNGSGKSNILDAICFVLGISNLTAVRASNLQELVYKQGQAGVTKASVTILFNNEDRSKSPVGYEQYKQISVARQVVIGGKNKYLINGHTAQVNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMYENKKQSALKTMGKKEKKVDEINKILAEEITPTLEKLRKEKMNYMQWAANNTEMERLTRFCIAYEFTKAEQISAKSTTELKDMEEKVEALA 264
[Close]
BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: M4B1T2_HYAAE (SMC hinge domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1T2_HYAAE)

HSP 1 Score: 350 bits (899), Expect = 1.760e-107
Identity = 185/312 (59.29%), Postives = 235/312 (75.32%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDEALRFDERQAALAAKAAQLKAALKAKDAEMAALEGKRDGAAGKALKMAVATAEGLSKELVQ 1166
            M+IEEI++DGFKSYATRTV+SGFDP FNAITGLNGSGKSN+LD+ICFVLGI+NLSQVRA NLQELVYKQGQAGVT+A VT+VFNN+D ++SP+G E   + SV+R VV GG+NKY I+G TAQ SQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRM+ENK+ ++L+T+ KK+ KV EINS L  EI P LEKLR EK  +  W +   E++R +R  VAF++ +    +  +     +  + Q AL  +   ++  ++  + E+  L+ +RD   GK  +      E + K++V+
Sbjct:    1 MHIEEIILDGFKSYATRTVISGFDPRFNAITGLNGSGKSNVLDAICFVLGITNLSQVRANNLQELVYKQGQAGVTKASVTIVFNNQDAKASPVGYEQYEQMSVARQVVIGGRNKYLINGHTAQVSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMYENKKLAALKTMTKKEKKVEEINSILANEITPTLEKLRAEKTHYLKWAANNTEMERLQRFCVAFDYQKAQDALKNTAQHVEKMQQAQRALKEEEGHIEREIEEVEDEVEVLQQQRDKEMGKEFQQLKDNVEKIGKDVVK 312
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BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: A0A485L9X9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9X9_9STRA)

HSP 1 Score: 350 bits (899), Expect = 2.180e-107
Identity = 189/312 (60.58%), Postives = 234/312 (75.00%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDEALRFDERQAALAAKAAQLKAALKAKDAEMAALEGKRDGAAGKALKMAVATAEGLSKELVQ 1166
            M++EE++IDGFKSYATRTV+SGFDP FNAITGLNGSGKSNILD+ICFVLGISNLS VRA NLQELVYKQGQAGVT+A VT++FNNED   SP+G E   + SV+R VV GGKNKY I+G TAQ +QVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRM+ENK+Q++L+T+ KK+ KV EIN  L  EI P LEKLR+EK  +  W +   E++R  R   A+EF++ +++  +S  E      +  +L  +  + +AA+++   EM A+   RD       ++     E L KELV+
Sbjct:    1 MFVEEVIIDGFKSYATRTVVSGFDPRFNAITGLNGSGKSNILDAICFVLGISNLSAVRASNLQELVYKQGQAGVTKASVTILFNNEDSSKSPVGYEQYKQISVARQVVIGGKNKYLINGHTAQVNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMYENKKQAALKTMSKKEKKVFEINKILAEEITPTLEKLRKEKMNYMQWAANNTEMERLSRFCTAYEFTKAEQMSAKSTSELQDMQTKLESLGQQRLEHEAAMESTQDEMDAINMNRDKHMRGEFQVLKEKEEALGKELVK 312
[Close]
BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 2.650e-107
Identity = 197/313 (62.94%), Postives = 235/313 (75.08%), Query Frame = 3 
Query:  231 MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLGISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNKFSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLEGEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESKDEALRFDERQAALAAKAAQLKAALKAKDAEMAALEGKRDGAAGKALKMAVATAEGLSKELVQA 1169
            M+I E+VIDGFKSYATRTVL GFD  FNAITGLNGSGKSNILD+ICFVLGISNLSQVR  NLQELVYKQGQAGVT+A VTLVF+N DK+ SP+G E  ++ +++R VV GGKNKY I+GRT QQSQV NLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFE K+QS+ +TIEKKQ KV EIN+ L+ EI PRL+ LR +K     W++   E  R +R  VA+ FS  +  +  S+ E    +E Q AL A   + +  +   +A+   ++  ++G   K LK A A  E LSK+LVQA
Sbjct:    1 MHIREVVIDGFKSYATRTVLQGFDQQFNAITGLNGSGKSNILDAICFVLGISNLSQVRVSNLQELVYKQGQAGVTKASVTLVFSNVDKKGSPMGYEEFDEVTITRQVVIGGKNKYLINGRTVQQSQVTNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMIEEAAGTRMFEQKKQSAQKTIEKKQQKVDEINAILQDEITPRLDTLRGQKTHWLKWKANEGEESRLQRFCVAYSFSMAESTLSSSEGEKQALEEEQGALQAAQKEAQEEVAQTEAKAREVQALKEGKLEKDLKEASAAREKLSKDLVQA 313
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7071.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M4BZ72_HYAAE1.440e-11459.29SMC_N domain-containing protein n=1 Tax=Hyaloperon... [more]
W7TGS9_9STRA2.560e-11263.78Structural maintenance of chromosomes protein n=2 ... [more]
A0A836CJQ0_9STRA4.510e-11273.81Structural maintenance of chromosomes protein n=1 ... [more]
A0A1J3K720_NOCCA1.170e-10866.53Structural maintenance of chromosomes protein 2-1 ... [more]
A0A565CW20_9BRAS6.430e-10866.94SMC_N domain-containing protein n=1 Tax=Arabis nem... [more]
A0A6N2KQT2_SALVM9.340e-10855.77SMC_N domain-containing protein n=1 Tax=Salix vimi... [more]
A0A024U5Z4_9STRA1.130e-10768.18Structural maintenance of chromosomes protein n=2 ... [more]
M4B1T2_HYAAE1.760e-10759.29SMC hinge domain-containing protein n=1 Tax=Hyalop... [more]
A0A485L9X9_9STRA2.180e-10760.58Structural maintenance of chromosomes protein n=1 ... [more]
D7FGT8_ECTSI2.650e-10762.94SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7071contigP-wetherbeei_contig7071:3..2125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FGT8
Preferred nameSMC2
PFAMsSMC_N,SMC_hinge
Model size1169
Max annot lvl2759|Eukaryota
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034506,GO:0034641,GO:0035327,GO:0035639,GO:0036094,GO:0036292,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045595,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1990837,GO:2000241,GO:2000242,GO:2000736
Exons4
Evalue1.43e-109
EggNOG OGsCOG1196@1|root,KOG0933@2759|Eukaryota
Descriptionchromosome condensation
Cds size939
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.2385762-CDS-P-wetherbeei_contig7071:2..2991683186956.2385762-CDS-P-wetherbeei_contig7071:2..299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7071 3..299 -
1683186956.251342-CDS-P-wetherbeei_contig7071:663..8491683186956.251342-CDS-P-wetherbeei_contig7071:663..849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7071 664..849 -
1683186956.266392-CDS-P-wetherbeei_contig7071:1158..16141683186956.266392-CDS-P-wetherbeei_contig7071:1158..1614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7071 1159..1614 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.2755775-UTR-P-wetherbeei_contig7071:1614..16961683186956.2755775-UTR-P-wetherbeei_contig7071:1614..1696Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7071 1615..1696 -
1683186956.2848842-UTR-P-wetherbeei_contig7071:1977..21251683186956.2848842-UTR-P-wetherbeei_contig7071:1977..2125Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7071 1978..2125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7071.1.1prot_P-wetherbeei_contig7071.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7071 3..1614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7071.1.1

>prot_P-wetherbeei_contig7071.1.1 ID=prot_P-wetherbeei_contig7071.1.1|Name=mRNA_P-wetherbeei_contig7071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=313bp
MYIEEIVIDGFKSYATRTVLSGFDPHFNAITGLNGSGKSNILDSICFVLG
ISNLSQVRAGNLQELVYKQGQAGVTRAEVTLVFNNEDKRSSPIGKEHLNK
FSVSRTVVAGGKNKYAIDGRTAQQSQVQNLFHSVQLNVNNPHFLIMQGRI
TKVLNMKPPEILGMIEEAAGTRMFENKRQSSLRTIEKKQAKVHEINSFLE
GEINPRLEKLREEKRKHDAWESTGEELKRRERRLVAFEFSEVDRLVHESK
DEALRFDERQAALAAKAAQLKAALKAKDAEMAALEGKRDGAAGKALKMAV
ATAEGLSKELVQA
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mRNA from alignment at P-wetherbeei_contig7071:3..2125-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7071.1.1 ID=mRNA_P-wetherbeei_contig7071.1.1|Name=mRNA_P-wetherbeei_contig7071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2123bp|location=Sequence derived from alignment at P-wetherbeei_contig7071:3..2125- (Phaeothamnion wetherbeei SAG_119_79)
TTTCCATCGGAGCCTTCTCTCGGCAGAAGCGTCACGCTTCGATAGTGAAC
GCAGCTCGAGAGGCCCGCAACCGGGCCGAAAACGCGCAGCGGTCGGTCCT
ACTCAAAAGAAGGACTTTTGAAAATCGAAAGACCTCTTACAGACCAAGGT
GAACAGCACGGAGAGTGCCAAGTCCTTCACTTTATCTACATGTCATTTCT
TGTCGCCTGTATCGTTGCTCGTTGCGCGTGGCTCTGCTTTTTCCGGCTTT
TGAGCTTCGTAGTCTCGCACGTCGCGTCTCGGGTGCTGAGGCATGAAGAA
GAACTGCGCCATCAGCGTAACGTCGATACAAACATGCGCGCTTCGCGTTT
TTTATATCTCCACCTCCTCACCCCCCGCTTTCACGCGAAGAGGCTTAATC
GACCTGCGTTTCTGCCGAACAAAACGTAGGCGCGCTTCGCTTTGAAGAAA
GGAGCAACATATACTTTGCTCTGCCCGTTGAGAGCGCCGCCGGCGCCACC
GCTTCGCAGCCATGTACATCGAAGAGATCGTCATCGACGGCTTCAAGTCG
TACGCGACGCGGACCGTCCTGTCGGGCTTCGACCCACACTTCAACGCCAT
CACGGGTCTTAACGGCAGCGGCAAGTCCAACATCCTCGACTCCATCTGCT
TCGTCCTCGGCATCAGCAACCTAAGCCAGGTCCGCGCTGGAAACCTCCAG
GAGCTCGTCTACAAACAGGGTCAAGCTGGTGTCACAAGAGCCGAAGTGAC
GCTGGTGTTCAACAACGAGGACAAGAGATCGTCGCCCATCGGGAAGGAGC
ACCTGAACAAGTTCAGCGTGTCGCGGACGGTGGTGGCGGGCGGAAAAAAC
AAGTATGCCATCGACGGGCGGACGGCGCAGCAGAGCCAGGTCCAGAACCT
CTTCCACTCCGTGCAGCTCAACGTCAACAACCCCCACTTCCTCATCATGC
AGGGCCGAATCACCAAGGTGCGTTCGAAGTAGGGAACGGCGGCGGGATAA
GGGTGCCGGACCGGCTGCTGGTTGCCTCGTTTGATTATGCTCATTGCACT
ACCGCTGACGCGGCTTGCTCTGCTTCAGGTCTCCCCACGTTATCACCTGG
ACTAGTTTAAAACCGGCAGATTATCTCATGATCCTTTTTTTTGGCCAAAC
ACAGAAAATGGCCTGCAGTACAAATGGCCTATAGCTCTACCTAATGCCTG
TGCATGTCCTCCTTTCGAATAGCTTGCTTATTTAACATGCGGGCGGGTGG
CGGTGGCGGCTTTTCGTTTCCTGCAGGTGCTCAACATGAAGCCGCCGGAG
ATTCTTGGCATGATTGAGGAGGCGGCCGGCACGCGCATGTTTGAAAACAA
GCGGCAAAGCTCCCTCCGTACCATCGAGAAGAAGCAGGCCAAAGTCCACG
AGATCAATAGCTTCCTCGAGGGCGAGATCAATCCCCGCCTCGAGAAGCTC
CGCGAGGAGAAAGTGAGGAGCGAGGCATCTGAAGGCTGGCTCCCTTTCCC
ATTGCTCCGCTGCCGCCACCTGCCCGCCCGCCTGCCCGACTTCCATCTTG
TTTACTTCCCGCTACAAGCTTGTTTTGGAAGGCCTTAATGTGTTGGCGCA
GCAACCTGCGGAGGCTAGGGAGCAGGGATTACCGGCGGCACCGGCATAAA
CGGCCACCAGTGTCCGCTTCTGGCTTCTGGCGTTCTGCGGCATCAGCACA
ATCTAGCACTGACGTCTACCATTTTGATCTTTTAACTTGTATCGCGCATT
GCTGCCTTTCTTTTTCTCTAGCCGGAATAGCCGACCAACAGTCGCTCGCA
AATTCTGCTCAATACCGAAACCGCAGAGGAAGCACGACGCATGGGAGTCG
ACGGGGGAAGAGCTGAAGCGGCGGGAACGGCGCCTCGTCGCCTTCGAATT
CAGCGAGGTGGACCGCCTTGTGCACGAGTCGAAGGACGAGGCGCTGCGCT
TCGACGAGCGTCAGGCGGCCCTGGCGGCGAAAGCGGCGCAGCTCAAGGCG
GCGCTGAAGGCGAAGGACGCCGAAATGGCGGCGCTTGAGGGGAAGCGGGA
CGGGGCGGCCGGCAAGGCGCTGAAAATGGCGGTGGCCACGGCAGAGGGGC
TCAGCAAGGAGCTGGTGCAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7071:3..2125-

>mRNA_P-wetherbeei_contig7071.1.1 ID=mRNA_P-wetherbeei_contig7071.1.1|Name=mRNA_P-wetherbeei_contig7071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig7071:3..2125- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACATCGAAGAGATCGTCATCGACGGCTTCAAGTCGTACGCGACGCG
GACCGTCCTGTCGGGCTTCGACCCACACTTCAACGCCATCACGGGTCTTA
ACGGCAGCGGCAAGTCCAACATCCTCGACTCCATCTGCTTCGTCCTCGGC
ATCAGCAACCTAAGCCAGGTCCGCGCTGGAAACCTCCAGGAGCTCGTCTA
CAAACAGGGTCAAGCTGGTGTCACAAGAGCCGAAGTGACGCTGGTGTTCA
ACAACGAGGACAAGAGATCGTCGCCCATCGGGAAGGAGCACCTGAACAAG
TTCAGCGTGTCGCGGACGGTGGTGGCGGGCGGAAAAAACAAGTATGCCAT
CGACGGGCGGACGGCGCAGCAGAGCCAGGTCCAGAACCTCTTCCACTCCG
TGCAGCTCAACGTCAACAACCCCCACTTCCTCATCATGCAGGGCCGAATC
ACCAAGGTGCTCAACATGAAGCCGCCGGAGATTCTTGGCATGATTGAGGA
GGCGGCCGGCACGCGCATGTTTGAAAACAAGCGGCAAAGCTCCCTCCGTA
CCATCGAGAAGAAGCAGGCCAAAGTCCACGAGATCAATAGCTTCCTCGAG
GGCGAGATCAATCCCCGCCTCGAGAAGCTCCGCGAGGAGAAAAGGAAGCA
CGACGCATGGGAGTCGACGGGGGAAGAGCTGAAGCGGCGGGAACGGCGCC
TCGTCGCCTTCGAATTCAGCGAGGTGGACCGCCTTGTGCACGAGTCGAAG
GACGAGGCGCTGCGCTTCGACGAGCGTCAGGCGGCCCTGGCGGCGAAAGC
GGCGCAGCTCAAGGCGGCGCTGAAGGCGAAGGACGCCGAAATGGCGGCGC
TTGAGGGGAAGCGGGACGGGGCGGCCGGCAAGGCGCTGAAAATGGCGGTG
GCCACGGCAGAGGGGCTCAGCAAGGAGCTGGTGCAGGCC
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