mRNA_P-wetherbeei_contig7070.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7070.3.1
Unique NamemRNA_P-wetherbeei_contig7070.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: M8A460_TRIUA (Uncharacterized protein n=5 Tax=Triticum TaxID=4564 RepID=M8A460_TRIUA)

HSP 1 Score: 110 bits (276), Expect = 4.440e-26
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:  598 TQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            ++ LPRVLIVSRRTVRK KFVDFVGEYHLDLVV    AVP+IVPR AG+ AMLD+FEP HG++LCEGEDID
Sbjct:    9 SRILPRVLIVSRRTVRKNKFVDFVGEYHLDLVVGYG-AVPVIVPRVAGVHAMLDSFEPIHGVLLCEGEDID 78
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: UPI001F5C7E8D (putative glutamine amidotransferase GAT1_2.1 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C7E8D)

HSP 1 Score: 113 bits (283), Expect = 2.730e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  586 DQELTQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            D +L++ LPRVLIVSRRTVRK KFVDFVGEYHLDLVV    AVP+IVPR AGI AMLD+F+P HG++LCEGEDID
Sbjct:    5 DPDLSRILPRVLIVSRRTVRKNKFVDFVGEYHLDLVVGYG-AVPVIVPRVAGIHAMLDSFDPIHGVLLCEGEDID 78
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: A0A3P6D331_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6D331_BRAOL)

HSP 1 Score: 105 bits (263), Expect = 3.090e-25
Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  592 ELTQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            +L++ LPRVL+VSRRT+RK KFVDFVGEYHLDL+V    AVP+IVPR AG+  +L++F+P HG++LCEGEDID
Sbjct:    8 DLSRILPRVLVVSRRTLRKNKFVDFVGEYHLDLIVEYG-AVPVIVPRVAGVDKLLESFKPIHGILLCEGEDID 79
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: M8BQT9_AEGTA (Uncharacterized protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8BQT9_AEGTA)

HSP 1 Score: 110 bits (275), Expect = 4.780e-25
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:  607 LPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            LPRVLIVSRRTVRK KFVDFVGEYHLDLVV    AVP+IVPR AG+ AMLD+FEP HG++LCEGEDID
Sbjct:    9 LPRVLIVSRRTVRKNKFVDFVGEYHLDLVVGYG-AVPVIVPRVAGVHAMLDSFEPIHGVLLCEGEDID 75
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: A0A446N2M9_TRITD (Uncharacterized protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446N2M9_TRITD)

HSP 1 Score: 110 bits (275), Expect = 8.350e-25
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:  598 TQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            ++ LPRVLIVSRRTVRK KFVDFVGEYHLDLVV    AVP+IVPR AG+ AMLD+FEP HG++LCEGEDID
Sbjct:    9 SRILPRVLIVSRRTVRKNKFVDFVGEYHLDLVVGYG-AVPVIVPRVAGLHAMLDSFEPIHGVLLCEGEDID 78
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: M1CHX4_SOLTU (Gamma-glutamyl-gamma-aminobutyrate hydrolase n=2 Tax=Solanoideae TaxID=424551 RepID=M1CHX4_SOLTU)

HSP 1 Score: 109 bits (272), Expect = 8.770e-25
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:  589 QELTQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            +EL+  LPRVLIVSRRTVRK KFVDFVGEYHLDL+V    AVP+IVPR +G+  +LD+FEP HG++LCEGEDID
Sbjct:    4 EELSVVLPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG-AVPVIVPRVSGVHMLLDSFEPIHGVLLCEGEDID 76
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: A0A1B6Q1X9_SORBI (Uncharacterized protein n=4 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6Q1X9_SORBI)

HSP 1 Score: 111 bits (278), Expect = 1.500e-24
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:  592 ELTQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            +L++ LPRVLIVSRRTVRK KFVDFVGEYHLDL+V    AVP+IVPR AG+ A+LD+FEP HG++LCEGEDID
Sbjct:   11 DLSRVLPRVLIVSRRTVRKNKFVDFVGEYHLDLIVGYG-AVPVIVPRVAGVHALLDSFEPIHGVLLCEGEDID 82
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: M8A559_TRIUA (Uncharacterized protein n=3 Tax=Triticum TaxID=4564 RepID=M8A559_TRIUA)

HSP 1 Score: 109 bits (273), Expect = 1.560e-24
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:  607 LPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            LPRVLIVSRRTVRK KFVDFVGEYHLDLVV    AVP+IVPR AG+ AMLD+FEP HG++LCEGEDID
Sbjct:    9 LPRVLIVSRRTVRKNKFVDFVGEYHLDLVVGHG-AVPVIVPRVAGVHAMLDSFEPIHGVLLCEGEDID 75
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: A0A388KD59_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KD59_CHABU)

HSP 1 Score: 112 bits (281), Expect = 1.800e-24
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  592 ELTQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            +L+Q LPRVLIVSRRTVRK KFVDFVGEYHLDL+VR   AVPIIVPR  G+  +LD+FEP HG++LCEGEDID
Sbjct:   37 QLSQCLPRVLIVSRRTVRKNKFVDFVGEYHLDLIVRYG-AVPIIVPRVTGLDGLLDSFEPIHGVLLCEGEDID 108
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BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Match: A0A398AH14_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A398AH14_BRACM)

HSP 1 Score: 105 bits (262), Expect = 2.360e-24
Identity = 49/73 (67.12%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:  592 ELTQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRLSRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID 810
            +L++ LPRVL+VSRRT+RK KFVDFVGEYHLDL+V    AVP+IVPR AG+  +L++F+P HG++LCEGEDID
Sbjct:    8 DLSRILPRVLVVSRRTLRKNKFVDFVGEYHLDLIVEYG-AVPVIVPRVAGVDKLLESFKPIHGVLLCEGEDID 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7070.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M8A460_TRIUA4.440e-2677.46Uncharacterized protein n=5 Tax=Triticum TaxID=456... [more]
UPI001F5C7E8D2.730e-2576.00putative glutamine amidotransferase GAT1_2.1 n=1 T... [more]
A0A3P6D331_BRAOL3.090e-2567.12Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
M8BQT9_AEGTA4.780e-2580.88Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A446N2M9_TRITD8.350e-2577.46Uncharacterized protein n=2 Tax=Triticum turgidum ... [more]
M1CHX4_SOLTU8.770e-2571.62Gamma-glutamyl-gamma-aminobutyrate hydrolase n=2 T... [more]
A0A1B6Q1X9_SORBI1.500e-2473.97Uncharacterized protein n=4 Tax=Andropogoneae TaxI... [more]
M8A559_TRIUA1.560e-2480.88Uncharacterized protein n=3 Tax=Triticum TaxID=456... [more]
A0A388KD59_CHABU1.800e-2475.34Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A398AH14_BRACM2.360e-2467.12Uncharacterized protein n=1 Tax=Brassica campestri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7070contigP-wetherbeei_contig7070:2035..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4558.Sb03g006680.1
PFAMsPeptidase_C26
Model size810
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0022603,GO:0048831,GO:0050789,GO:0050793,GO:0051239,GO:0060688,GO:0065007,GO:1900618,GO:1905428,GO:2000026,GO:2000032
Exons2
Evalue4.4e-28
EggNOG OGsCOG2071@1|root,2QR1H@2759|Eukaryota,37RE4@33090|Viridiplantae,3G7M2@35493|Streptophyta,3KXU8@4447|Liliopsida,3I6BR@38820|Poales
DescriptionPeptidase C26
Cds size258
COG categoryF
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.185662-UTR-P-wetherbeei_contig7070:2034..25861683186956.185662-UTR-P-wetherbeei_contig7070:2034..2586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7070 2035..2586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186956.196279-CDS-P-wetherbeei_contig7070:2586..27071683186956.196279-CDS-P-wetherbeei_contig7070:2586..2707Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7070 2587..2707 +
1683186956.207046-CDS-P-wetherbeei_contig7070:2996..31331683186956.207046-CDS-P-wetherbeei_contig7070:2996..3133Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7070 2997..3133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7070.3.1prot_P-wetherbeei_contig7070.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7070 2587..3133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7070.3.1

>prot_P-wetherbeei_contig7070.3.1 ID=prot_P-wetherbeei_contig7070.3.1|Name=mRNA_P-wetherbeei_contig7070.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MAAFTRKDEHIDQELTQALPRVLIVSRRTVRKEKFVDFVGEYHLDLVVRL
SRAVPIIVPRTAGIVAMLDAFEPFHGLVLCEGEDID
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mRNA from alignment at P-wetherbeei_contig7070:2035..3133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7070.3.1 ID=mRNA_P-wetherbeei_contig7070.3.1|Name=mRNA_P-wetherbeei_contig7070.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1099bp|location=Sequence derived from alignment at P-wetherbeei_contig7070:2035..3133+ (Phaeothamnion wetherbeei SAG_119_79)
GCAATCGAAAGCATTTGGACCCTTCGCGGATGAGAGATACACGCTCGATT
ACCTCTCGGAATGGACGGAGGAGACCGCCGCGCCGGGAGTCCAGGGGGGT
GGTGGTGGTGGTGTGTGTGTTGGTTCCAAATATAGATTTTCCTTTTCCCT
TCATCTGTCGGCTGCTGCGTCTCTCGAAACAAAGAGAAAGGGAGAGAGAG
CAAGAGGAGCAGACAGAGTCCGTCGCCGGTAGTTGTGCGCCGGGAAAATG
AGAAGGAGTTTTGACCGGAATTTCGATCTGTTCCGTTTCGTAAATCCTGG
CGGTAATGTTATGCCCGTTGATACGTCTTTTGAAGAGAGGGGTAGAGGCC
GAACACCAGCCGAATTAAGTACTGGTAGCTTAATCGAATCCCAAGGATAG
AAGTTTCGAGATTGCCCTACGTGCCTCCGTGCGCTGTTGTTGTAGAGAGA
CGAGAAGTAAAAGGCCACCACAGTGCGTCTGAGCTGCGAGCTGCCCCGTG
CAGCACAAACAAGCAAAAACCAAACACGCACAAAAAAGCAAAAGCGAAAG
AAATGGCTGCTTTTACACGGAAAGACGAGCACATAGACCAGGAGCTCACT
CAAGCCCTCCCGCGGGTGCTGATCGTGTCGCGAAGGACTGTCAGAAAAGA
GAAATTCGTGGATTTCGTGGGCGGTAAGCAGAAGAGACAGCGGCCCGGAG
GCACCCAAGCCACACTTTCATCGTGTGCTTTAAAGCCCCTTTGCGCCTTC
ACAATATTTCCCGCGGCTTCACAATATTTCCTCCCAAACCCGTCTGAAAG
CGAAGCCGGATTCAGCTGCGCTTTCAGGCAAGGCTTTTCACAGCATCGAC
TCATCATCTGCCGCGCTTTCCGCGCCGCGAGGCTCCGGTCTTTCCGCGCT
TTACGGTTGCATGACTGGCGGTTTTCTTCGACGTTTCTTTCCGTCTCCTT
TCGCCGTTGCAGAATACCACTTGGATTTGGTGGTCCGGCTCTCGCGTGCC
GTGCCGATCATCGTCCCACGGACTGCGGGCATTGTGGCCATGCTCGACGC
CTTTGAGCCGTTTCACGGCCTCGTGCTGTGCGAAGGCGAAGACATCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7070:2035..3133+

>mRNA_P-wetherbeei_contig7070.3.1 ID=mRNA_P-wetherbeei_contig7070.3.1|Name=mRNA_P-wetherbeei_contig7070.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig7070:2035..3133+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGCTTTTACACGGAAAGACGAGCACATAGACCAGGAGCTCACTCA
AGCCCTCCCGCGGGTGCTGATCGTGTCGCGAAGGACTGTCAGAAAAGAGA
AATTCGTGGATTTCGTGGGCGAATACCACTTGGATTTGGTGGTCCGGCTC
TCGCGTGCCGTGCCGATCATCGTCCCACGGACTGCGGGCATTGTGGCCAT
GCTCGACGCCTTTGAGCCGTTTCACGGCCTCGTGCTGTGCGAAGGCGAAG
ACATCGAC
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