mRNA_P-wetherbeei_contig7066.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7066.2.1
Unique NamemRNA_P-wetherbeei_contig7066.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 183 bits (464), Expect = 6.340e-56
Identity = 88/108 (81.48%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRA 324
            RLPP+VNRVLYVRNLPFKITA+EMYDIFGK+GAIRQIR+GDK +T+G+AFVVYEDIYDAK A+DHLSGFNV GRYLIVLYYQP +MAK+MD E+++RELEELKA Y A
Sbjct:   12 RLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPTRMAKKMDQERERRELEELKAKYLA 119
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 9.720e-55
Identity = 87/116 (75.00%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDKEEGG 348
            RLPP+VNR +YVRNLPFKI+ADEMYDIFGK+GAIRQIRLGD+Q+TRG+AFVVY+DIYDAK A+DHLSGFNV GRYLIVLYYQP KMAKRMD + KK+ELEEL+A  +  ++++  G
Sbjct:    2 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQPAKMAKRMDQQAKKKELEELRAKLKVAREEDAAG 117
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.640e-53
Identity = 85/111 (76.58%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKD 333
            RLPP+VNRVLYVRNLPFKIT++EMYDIFGK+GAIRQIR+GDK +TRG+AFVVYEDIYDAK A+DHLSGFNV GRYL+VLYYQ ++M KRMD +KK++ELEELK  Y    D
Sbjct:   14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRMQKRMDNDKKRKELEELKQKYNVSAD 124
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.820e-53
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAG 327
            RLPP+VNR+LYVRNLPFKITADEMYDIFGK+GAIRQIRLGDK +TRG+AFVVYEDIYDAK A+DHLSGFNV GRYLIVLYYQ  K  KR+D  KK+RE+EE+KA +  G
Sbjct:   11 RLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQSTKALKRVDEMKKRREIEEIKAKFGVG 119
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.290e-53
Identity = 89/118 (75.42%), Postives = 103/118 (87.29%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDKEEGGGS 354
            RLPP+VNRVLY+RNLPFKIT++EMYDIFGK+GAIRQIR+GDK +TRG+AFVVYEDIYDAK A+DHLSGFNV GRYLIVLYYQ  +M KR+D +KK+RELEELKA +      EEGG S
Sbjct:   12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQAARMEKRIDNDKKRRELEELKAKFNVSG--EEGGES 127
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A6A4V7I5_AMPAM (Splicing factor 3B subunit 6 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4V7I5_AMPAM)

HSP 1 Score: 171 bits (432), Expect = 4.230e-51
Identity = 82/112 (73.21%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDK 336
            RLPP+VNRVLYVRNLP+KITA+EMYDIFGKFGAIRQIR+G+  ETRG+AFVVYEDI+DAK A DHLSGFNV  RYL+VLYYQPNK  K++D +KKK EL+++KA Y   ++K
Sbjct:   12 RLPPEVNRVLYVRNLPYKITAEEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQPNKAFKKLDADKKKEELDKMKAKYNLNEEK 123
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A4V1IXH8_9FUNG (RRM domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IXH8_9FUNG)

HSP 1 Score: 170 bits (430), Expect = 8.500e-51
Identity = 82/109 (75.23%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAG 327
            RLPPDVNR+L VRNLP+KITA+EMYDIFGK+GAIRQIR G   +T+G+AFVVYEDIYDAK A +HLSGFNV+GRYLIVLYYQPNK+ KRM++ KK++ELEELK+ Y  G
Sbjct:   12 RLPPDVNRILLVRNLPYKITAEEMYDIFGKYGAIRQIRSGTATDTKGTAFVVYEDIYDAKAACEHLSGFNVMGRYLIVLYYQPNKVTKRMNLAKKEQELEELKSRYGVG 120
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A397G311_9GLOM (RRM domain-containing protein n=8 Tax=Glomeromycetes TaxID=214506 RepID=A0A397G311_9GLOM)

HSP 1 Score: 170 bits (430), Expect = 8.770e-51
Identity = 79/106 (74.53%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIY 318
            RLPP+VNRVL+VRNLPF IT++EMYDIFGK+GAIRQIRLG +++TRG+AFVVYEDI+DAK A DHL+GFNV+GRYLIVLYYQPNK+ K+M+++KK+ EL+ELK+ Y
Sbjct:   13 RLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRLGSEKDTRGTAFVVYEDIFDAKAACDHLNGFNVMGRYLIVLYYQPNKVTKKMNLQKKEEELKELKSRY 118
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A067D1A1_SAPPC (Pre-mRNA branch site p14-like protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1A1_SAPPC)

HSP 1 Score: 169 bits (429), Expect = 1.130e-50
Identity = 81/106 (76.42%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIY 318
            RLPP+VNRVLYVRNLPFKI++DEMYDIFGK+GAIRQIRLG   +TRG+AFVVYEDIYDAK A+DHLSGFNV GRYL+VLYYQ N+++K+MD++ K++EL ELKA Y
Sbjct:   14 RLPPEVNRVLYVRNLPFKISSDEMYDIFGKYGAIRQIRLGVNADTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQANRVSKKMDVQAKQQELAELKARY 119
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BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.280e-50
Identity = 78/106 (73.58%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    1 RLPPDVNRVLYVRNLPFKITADEMYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLGRYLIVLYYQPNKMAKRMDMEKKKRELEELKAIY 318
            RLPP+VNRV+YVRNLPFKI+A+E+YDIFGK+GA+RQ+RLGDK +TRG+AFVVYEDIYDAK A+DHL+GFNV GRYL+VLYYQ +KM +R+D ++K++ELEELK  Y
Sbjct:   16 RLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQASKMQERIDNQRKRQELEELKKKY 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7066.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9GFW4_HETAK6.340e-5681.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7G0W6_ECTSI9.720e-5575.00RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2DAY0_9STRA2.640e-5376.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YN30_9STRA4.820e-5378.90RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2C985_9STRA7.290e-5375.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A4V7I5_AMPAM4.230e-5173.21Splicing factor 3B subunit 6 n=3 Tax=Thoracicalcar... [more]
A0A4V1IXH8_9FUNG8.500e-5175.23RRM domain-containing protein n=1 Tax=Thamnocephal... [more]
A0A397G311_9GLOM8.770e-5174.53RRM domain-containing protein n=8 Tax=Glomeromycet... [more]
A0A067D1A1_SAPPC1.130e-5076.42Pre-mRNA branch site p14-like protein n=4 Tax=Sapr... [more]
A0A7S2S8J7_9STRA4.280e-5073.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7066contigP-wetherbeei_contig7066:1368..2653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0W6
Preferred nameSF3B6
PFAMsRRM_1
Model size676
Max annot lvl2759|Eukaryota
KEGG rclassRC00632,RC00680
KEGG koko:K01464,ko:K12833
KEGG ReactionR02269,R03055,R08227
KEGG Pathwayko00240,ko00410,ko00770,ko00983,ko01100,ko03040,map00240,map00410,map00770,map00983,map01100,map03040
KEGG ModuleM00046,M00352
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0001701,GO:0001824,GO:0001825,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048646,GO:0048856,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons3
Evalue1.56e-41
EggNOG OGsKOG0114@1|root,KOG0114@2759|Eukaryota
EC3.5.2.2
DescriptionRNA splicing
Cds size336
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.634073-UTR-P-wetherbeei_contig7066:1367..14361683186955.634073-UTR-P-wetherbeei_contig7066:1367..1436Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7066 1368..1436 +
1683186955.6771088-UTR-P-wetherbeei_contig7066:2382..26531683186955.6771088-UTR-P-wetherbeei_contig7066:2382..2653Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7066 2383..2653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.6473024-CDS-P-wetherbeei_contig7066:1436..14711683186955.6473024-CDS-P-wetherbeei_contig7066:1436..1471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7066 1437..1471 +
1683186955.6568267-CDS-P-wetherbeei_contig7066:1669..18111683186955.6568267-CDS-P-wetherbeei_contig7066:1669..1811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7066 1670..1811 +
1683186955.6669207-CDS-P-wetherbeei_contig7066:2223..23821683186955.6669207-CDS-P-wetherbeei_contig7066:2223..2382Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7066 2224..2382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7066.2.1prot_P-wetherbeei_contig7066.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7066 1437..2382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7066.2.1

>prot_P-wetherbeei_contig7066.2.1 ID=prot_P-wetherbeei_contig7066.2.1|Name=mRNA_P-wetherbeei_contig7066.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MYDIFGKFGAIRQIRLGDKQETRGSAFVVYEDIYDAKQALDHLSGFNVLG
RYLIVLYYQPNKMAKRMDMEKKKRELEELKAIYRAGKDKEEGGGSGDSSG
KTATGKRPVPP*
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mRNA from alignment at P-wetherbeei_contig7066:1368..2653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7066.2.1 ID=mRNA_P-wetherbeei_contig7066.2.1|Name=mRNA_P-wetherbeei_contig7066.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1286bp|location=Sequence derived from alignment at P-wetherbeei_contig7066:1368..2653+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCTGCCGCCAGACGTCAACCGAGTCTTGTACGTCCGCAATCTGCCCTT
CAAAATCACGGCTGATGAAATGTACGACATCTTCGGCAAGTTCGGTGCCA
TTAGGTGAGTGCATTTGAGAAGGACTGGCGTTAAATGTGGCGTCTGCTTT
TCGCGTTATGTGATTTGGCAGCAAAGTTCTTCCAGTGCTACACCAACACT
TCTCGCGTTCGTCCTCACCCTCGTGCGCGCGCTCTTCCTTAGACGTCGTC
TTCCTGACGCCCTTCTCCTTGATTGCATGCCAAAATTTCTTCCGCGGCGC
AGACAAATACGGTTAGGGGACAAGCAGGAGACGCGGGGGTCGGCGTTCGT
GGTGTATGAGGACATCTACGACGCCAAGCAGGCCCTCGACCACCTTTCGG
GCTTCAACGTGCTCGGGCGGTACCTCATCGTTTTGTATTACCAGGTGAGC
TCATCGTTCTGGTGGTAGGGACAATCCTCTTAGTTTTTGGTCAAAATATT
TTCGAGTCCTGAGTTTCTCACGGACAGGAACCGTGCCTGGACATGGCAGA
GCTGGCATAGCCCGCCTGGACGCTATGGCAGCGTCGGCGACAATTCTCGT
CAACTTTTATTACCTTCGTTGTGCTTCGCGCGAGAAGGGCACAGCCTAAA
AACGGCGTGCCGTTGCCCATTGCCGCGACACGCAGGGGGACATTTGAGGA
CTTTTTCCGGGCGAAACTGCAGGCTTGCACCTTAGTCACCGTCTCCTGCG
TCATTGTCGGTCTCTTCTCTCGTTTTCCACCCTATATTACCGAACAATTC
CCTCGCTTACCATCTGCTCCCACCGTCGTCATTTATTGTCATATGCCGCA
CGACAGCCGAACAAGATGGCGAAGCGGATGGACATGGAGAAGAAGAAGCG
GGAGCTCGAGGAACTCAAGGCCATCTACCGCGCCGGGAAGGACAAGGAGG
AAGGTGGGGGCAGCGGCGACAGCAGCGGCAAAACCGCCACCGGGAAGAGG
CCGGTCCCGCCGTGACGTGGTCGAGGGGGAAGAGGACGGCGCCGTCGGTT
AGTAGCTGGTTAGTTTGCAGAGTCGGCTTGGGCGGCGGCTGCGAAGGCGA
ATGGACGAATGGAGCACGTGCGTGGAAGAGCAAACCCGTATGTGCGGATT
TGAGAGAGGTATGAAAGCGGCGTGCCGGAAGGGACGCCGCCGCTATGGTT
CACCTTCCTTGTAAAAAGAGATCCACTAAATTTGCGTCCAAATTTTTTGT
CACTGGCTCTGGTAGGCAGCATGATCAGGCTTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7066:1368..2653+

>mRNA_P-wetherbeei_contig7066.2.1 ID=mRNA_P-wetherbeei_contig7066.2.1|Name=mRNA_P-wetherbeei_contig7066.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig7066:1368..2653+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGACATCTTCGGCAAGTTCGGTGCCATTAGACAAATACGGTTAGG
GGACAAGCAGGAGACGCGGGGGTCGGCGTTCGTGGTGTATGAGGACATCT
ACGACGCCAAGCAGGCCCTCGACCACCTTTCGGGCTTCAACGTGCTCGGG
CGGTACCTCATCGTTTTGTATTACCAGCCGAACAAGATGGCGAAGCGGAT
GGACATGGAGAAGAAGAAGCGGGAGCTCGAGGAACTCAAGGCCATCTACC
GCGCCGGGAAGGACAAGGAGGAAGGTGGGGGCAGCGGCGACAGCAGCGGC
AAAACCGCCACCGGGAAGAGGCCGGTCCCGCCGTGA
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