mRNA_P-wetherbeei_contig7059.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7059.1.1
Unique NamemRNA_P-wetherbeei_contig7059.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7059.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7059contigP-wetherbeei_contig7059:298..1146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size849
Hectar predicted targeting categoryother localisation
Exons1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.0869448-CDS-P-wetherbeei_contig7059:297..10741683186955.0869448-CDS-P-wetherbeei_contig7059:297..1074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7059 298..1074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.0984013-UTR-P-wetherbeei_contig7059:1074..11461683186955.0984013-UTR-P-wetherbeei_contig7059:1074..1146Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7059 1075..1146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7059.1.1prot_P-wetherbeei_contig7059.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7059 298..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7059.1.1

>prot_P-wetherbeei_contig7059.1.1 ID=prot_P-wetherbeei_contig7059.1.1|Name=mRNA_P-wetherbeei_contig7059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MTSIDPFFQDSGEGTSSGSDEGTQEAGPARASLIRRAPVEIASPFNTLQQ
TAPPPTEKKRSKSPATAPRRKGAASLTPSSGPSEETTAASLMLRACFQPP
SEAMETFDRARRILRSYKTQRDPDALAEAAATVMRCWMEVNNEEVKRAAL
KTLWEACRYQTKCLSAAMAWVRAHAVRTAVATADADAGSLVPVLKALGKC
FDATKPAQDLDAAQRKEMRVATEDAGAIVGPVACGAGSAHSEAVAAVYLL
RQAVLASFP
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mRNA from alignment at P-wetherbeei_contig7059:298..1146-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7059.1.1 ID=mRNA_P-wetherbeei_contig7059.1.1|Name=mRNA_P-wetherbeei_contig7059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=849bp|location=Sequence derived from alignment at P-wetherbeei_contig7059:298..1146- (Phaeothamnion wetherbeei SAG_119_79)
CGTGTGCTGCTCAGCATACGAAGAGGAAAGCGTTTGGCAGTCTAATCAAA
GCGAAGGCTTTTCTCGAAGGCCATGACCAGTATAGACCCCTTCTTCCAGG
ACAGTGGGGAGGGCACGTCAAGCGGCAGCGATGAAGGCACCCAGGAGGCA
GGACCAGCGCGAGCAAGCTTGATCCGTAGGGCCCCAGTGGAAATAGCATC
TCCATTTAACACGCTGCAACAGACCGCCCCGCCGCCTACCGAGAAGAAAC
GCAGCAAGTCGCCCGCTACCGCGCCGCGGCGAAAGGGTGCCGCCTCCCTC
ACACCATCTTCCGGCCCTTCTGAGGAGACGACGGCGGCGAGCTTGATGCT
CCGCGCTTGTTTCCAGCCTCCTTCAGAGGCGATGGAGACGTTTGACCGAG
CGCGGCGCATCCTGCGCTCGTATAAGACGCAACGGGATCCAGACGCGCTT
GCTGAAGCCGCGGCGACAGTGATGCGCTGCTGGATGGAGGTGAATAATGA
AGAGGTGAAGAGGGCTGCCCTCAAGACCCTCTGGGAGGCATGCCGTTACC
AGACGAAGTGCCTTTCCGCCGCGATGGCCTGGGTGCGCGCCCATGCCGTT
CGAACCGCCGTCGCTACCGCCGACGCCGATGCGGGCTCGCTGGTGCCGGT
CCTCAAGGCGCTCGGCAAGTGCTTTGATGCGACTAAGCCCGCCCAAGACC
TCGATGCGGCGCAGCGAAAGGAGATGCGCGTCGCGACGGAAGACGCCGGT
GCCATCGTCGGCCCGGTGGCTTGCGGCGCCGGCTCCGCCCACTCGGAGGC
GGTGGCCGCAGTTTACTTGCTCCGTCAGGCGGTGCTGGCAAGTTTCCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7059:298..1146-

>mRNA_P-wetherbeei_contig7059.1.1 ID=mRNA_P-wetherbeei_contig7059.1.1|Name=mRNA_P-wetherbeei_contig7059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig7059:298..1146- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAGTATAGACCCCTTCTTCCAGGACAGTGGGGAGGGCACGTCAAG
CGGCAGCGATGAAGGCACCCAGGAGGCAGGACCAGCGCGAGCAAGCTTGA
TCCGTAGGGCCCCAGTGGAAATAGCATCTCCATTTAACACGCTGCAACAG
ACCGCCCCGCCGCCTACCGAGAAGAAACGCAGCAAGTCGCCCGCTACCGC
GCCGCGGCGAAAGGGTGCCGCCTCCCTCACACCATCTTCCGGCCCTTCTG
AGGAGACGACGGCGGCGAGCTTGATGCTCCGCGCTTGTTTCCAGCCTCCT
TCAGAGGCGATGGAGACGTTTGACCGAGCGCGGCGCATCCTGCGCTCGTA
TAAGACGCAACGGGATCCAGACGCGCTTGCTGAAGCCGCGGCGACAGTGA
TGCGCTGCTGGATGGAGGTGAATAATGAAGAGGTGAAGAGGGCTGCCCTC
AAGACCCTCTGGGAGGCATGCCGTTACCAGACGAAGTGCCTTTCCGCCGC
GATGGCCTGGGTGCGCGCCCATGCCGTTCGAACCGCCGTCGCTACCGCCG
ACGCCGATGCGGGCTCGCTGGTGCCGGTCCTCAAGGCGCTCGGCAAGTGC
TTTGATGCGACTAAGCCCGCCCAAGACCTCGATGCGGCGCAGCGAAAGGA
GATGCGCGTCGCGACGGAAGACGCCGGTGCCATCGTCGGCCCGGTGGCTT
GCGGCGCCGGCTCCGCCCACTCGGAGGCGGTGGCCGCAGTTTACTTGCTC
CGTCAGGCGGTGCTGGCAAGTTTCCCT
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