mRNA_P-wetherbeei_contig7058.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7058.1.1
Unique NamemRNA_P-wetherbeei_contig7058.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A835Z5U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.940e-36
Identity = 72/129 (55.81%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKGFFGLF 387
            +PLGLVLEE+   +V + +V+  SNA+++ KV PGDKI+F+SATFGD++WS RG GL+RVQ+AV+VRQGD V LVLES  E+ +K   A+A    +K+ EEDA VK+ RLL+ L+ D++K+ K FFGLF
Sbjct:   71 KPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSKKFFGLF 199          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: D8LTE7_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE7_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.840e-29
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQ-KRKKGFFGLF 387
            +P+GLVLEED   NV + E+  GSNA++  ++  GDKI FVSATFG+E+WSA+GVGLSRVQSA+++R G  V LVLE+ KE   K    SA +   + A+E    K+ RLL EL  D++ ++KK ++GLF
Sbjct:   89 KPMGLVLEEDERGNVYIVEIVPGSNASRKKQINVGDKITFVSATFGEEIWSAQGVGLSRVQSAIRIRSGPTVKLVLETSKEAEKKMARDSARLKRLQDAKETEEDKRDRLLRELSDDTKVQKKKPWYGLF 218          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A7S1E487_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E487_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.870e-29
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLGL+L+ED D NV V  +    NAA++G VK GD +   SATFG+++WS RGVGL+RV +A++VR G+ V L LES  +T  KA+   A   A + A   A  KK RLL ELE+D QK KKG FFGLF
Sbjct:   71 RPLGLILKEDKDGNVYVETIAPKGNAARAGGVKEGDVVTMCSATFGNDMWSTRGVGLTRVLAAIRVRAGNTVKLALESPNQTQQKARRVEASSKAAEAARLKAQEKKDRLLTELESDEQKLKKGKFFGLF 200          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A6S8XV32_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XV32_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.620e-29
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLGLVL ED D NV V  V    NAA++G VK GD +   SATFGD++WS RGVGL+RV +A++VR G  V+LV ES +ET  K K +S    A ++A + A  KK  LL+ELE D ++ KKG F GLF
Sbjct:   75 RPLGLVLNEDDDGNVYVETVAPKGNAARTGMVKEGDIVTMCSATFGDQMWSTRGVGLTRVLAAIRVRAGPTVSLVFESSQETQKKVKISSKAAVAAEEARKRAQEKKDMLLKELERDEKRLKKGKFLGLF 204          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: B8C928_THAPS (PDZ domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C928_THAPS)

HSP 1 Score: 111 bits (278), Expect = 2.540e-28
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLGLVL+ED + NV V  V    NAA+SG+VK GD +   SATFGD++WS RG GL+RV +A++VR G  V+LV ES  +   K    +   AA K+A+E A  K+  LL ELEAD +K KKG F GLF
Sbjct:   68 RPLGLVLDEDDNGNVFVQTVAPRGNAARSGQVKEGDIVTMCSATFGDQMWSTRGAGLTRVLAAIRVRAGPTVSLVFESTTQRKVKGAEVAKQAAAAKEAKERAQKKRDELLSELEADERKLKKGKFLGLF 197          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A7R9W701_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W701_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.890e-28
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLGLVL EDGD NV V  V    NAA++G+V+ GD +   SATFGD++WS RG GL+RV +A++VR G  V LV ES  ET  KAK  +    A + A   A  K+ +LL+ELE D ++ KKG F GLF
Sbjct:   73 RPLGLVLNEDGDGNVYVETVAPRGNAARTGEVREGDLVTMCSATFGDQMWSCRGAGLTRVLAAIRVRAGPTVKLVFESTSETQNKAKMGAKAAKAAEDARAKAQAKRDQLLDELEQDEKRLKKGKFLGLF 202          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A1E7FDA8_9STRA (PDZ domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDA8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.630e-28
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLGLVL +D   NV V  V +  NAA++GKVK GD +  VSATFGD++WS RGVGL+RV +A++VR G  V+LV ES  +   KA + S    A K A E A  KK  LL ELE D  K KKG F GLF
Sbjct:   82 KPLGLVLNQDDAGNVYVETVAARGNAARTGKVKEGDIVTMVSATFGDQMWSTRGVGLTRVLTAIRVRTGPRVSLVFESQNQYKKKAASTSKQQQAMKDAREAAQAKKDTLLSELEQDETKLKKGKFLGLF 211          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A7S4IT66_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IT66_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.090e-28
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLGLVL +DG+ NV V  V    NAA++G+VK GD +   SATFGD++WS RG GL+RV +A++VR G  V LV ES  E+  K K  +  + A ++A  +A  K+ +LL+ELE D +K KKG F GLF
Sbjct:   73 RPLGLVLNDDGNGNVYVETVAPRGNAARTGEVKEGDLVTMCSATFGDQMWSCRGAGLTRVLAAIRVRAGPTVKLVFESTAESKTKVKRGAKAVKAAEEARANAQAKRDQLLDELEQDEKKLKKGKFLGLF 202          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A7S0ATU5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATU5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.440e-27
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLG+VL ED D NV V  V +  NAA++G+V+ GD +   S+TFGD++WS RG GLSRV SA+++R G  V L LES KE   KA+  +  + A++ A   A  KK  LLEEL+ D Q+ KKG F GLF
Sbjct:   68 RPLGVVLGEDADGNVYVETVAARGNAARTGEVREGDFVTMCSSTFGDDMWSCRGAGLSRVLSAIRLRAGPTVKLALESSKEGNVKAQRTAKNLQAEEAARAKAQAKKDSLLEELQKDEQRLKKGKFLGLF 197          
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Match: A0A7S2N2W7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N2W7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.800e-27
Identity = 66/130 (50.77%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVWSARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAEEDAAVKKARLLEELEADSQKRKKG-FFGLF 387
            +PLGLVL ED D NV V  V    NAA++G VK GD +   SATFG+++WS RGVGL+RV +A++VR G  V+LV ES  ET  + K ++   AA  +A + A  KK +LL+ELE D ++ KKG F GLF
Sbjct:   77 RPLGLVLNEDDDGNVYVETVAPKGNAARTGLVKEGDIVTMCSATFGEQMWSTRGVGLTRVLAAIRVRAGPTVSLVFESPDETQRRVKTSAKAAAAADEARKRAQDKKDQLLKELERDEKRLKKGKFLGLF 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7058.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5U3_9STRA1.940e-3655.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LTE7_ECTSI3.840e-2950.77PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1E487_9STRA4.870e-2952.31Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A6S8XV32_9STRA7.620e-2952.31Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8C928_THAPS2.540e-2851.54PDZ domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7R9W701_9STRA2.890e-2850.77Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FDA8_9STRA3.630e-2853.08PDZ domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S4IT66_9STRA4.090e-2849.23Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0ATU5_9STRA1.440e-2750.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2N2W7_9STRA1.800e-2750.77Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7058contigP-wetherbeei_contig7058:1030..2132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTE7
Model size390
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.3e-30
EggNOG OGs2DS7A@1|root,2S6FC@2759|Eukaryota
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-02_006070.1
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
Cds size390
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186955.0256817-CDS-P-wetherbeei_contig7058:1029..11281683186955.0256817-CDS-P-wetherbeei_contig7058:1029..1128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7058 1030..1128 +
1683186955.0372713-CDS-P-wetherbeei_contig7058:1452..15581683186955.0372713-CDS-P-wetherbeei_contig7058:1452..1558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7058 1453..1558 +
1683186955.0468416-CDS-P-wetherbeei_contig7058:1947..21321683186955.0468416-CDS-P-wetherbeei_contig7058:1947..2132Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7058 1948..2132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7058.1.1prot_P-wetherbeei_contig7058.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7058 1030..2132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7058.1.1

>prot_P-wetherbeei_contig7058.1.1 ID=prot_P-wetherbeei_contig7058.1.1|Name=mRNA_P-wetherbeei_contig7058.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
QPLGLVLEEDGDRNVIVAEVRSGSNAAKSGKVKPGDKIAFVSATFGDEVW
SARGVGLSRVQSAVKVRQGDYVTLVLESGKETAAKAKNASAVMAAKKQAE
EDAAVKKARLLEELEADSQKRKKGFFGLF*
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mRNA from alignment at P-wetherbeei_contig7058:1030..2132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7058.1.1 ID=mRNA_P-wetherbeei_contig7058.1.1|Name=mRNA_P-wetherbeei_contig7058.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1103bp|location=Sequence derived from alignment at P-wetherbeei_contig7058:1030..2132+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGCTGGGCCTCGTGCTCGAGGAGGATGGTGACCGCAACGTCATCGT TGCCGAAGTCCGCTCCGGGAGCAACGCTGCGAAGTCAGGGAAAGTTAAGG TGAGGAATGAGGAAGCACGTTTAGGGAAGTAACGGGAGGGCAAACGGTAT TGGCTTAAGGACGTTCCGCAGACACAGCCGTCGTCAGCGATGGTCAGCAT TCAAAGCAGCTGGACTTTCCAACTTTTCTTGCATTCTCTGACAGCGGAGG AGCATAGTCGGCGGAAGAAAAGAGTGAAAGACTGTGATAAAAACTTAGAT TCCCGTTCGCCGCTTTTTGAACTAATCCGTGTTTCCCGACGGGACTCGGT TCTGTTTTTGGTGCCAATCTGGCCCTGTCCCTGCGGGGTTTTGAACCGAC TGTGCCTCGATCGGTCGTATCAGCCTGGCGACAAGATTGCGTTCGTGTCG GCGACCTTCGGTGACGAGGTGTGGAGCGCCCGGGGCGTCGGGCTCTCGCG GGTGCAGAGCGCCGTCAAGGTCCGCCAGGGTGAGTTGCCTGAACGGAGCA GAGTGGTGGCAGACAGGGCAGGCAGTTGAGCACACTTTCCAATGCATATT ATCGTTCTCTATTCCAGCTTTTGCATACTAGATGCCAACGCACTGCGTCG GTGGGCTTTTTGACTTCATCTTCTCGGAGTCCCCTTCAGAGACCTGTACA TCTGTGTTGTCTTCGAGGTTATGCCTTTTGAACTGTGGAACATTGCCATG GGGCTAGCGAGTGGCGAAGAAACCATTGGCTTGATCCTCTCTGTCCGCCT TTTCTGCTTTCCCCCCCACACTTTTCGCCGCCTTAATGGCTACCTGAAAC TCGGTCACCCAAACGAATCGATAACGAAACCAGAATCGATCATAACCCGC CGATTCAATCCGCTCCAGGAGACTACGTTACCCTGGTGCTGGAATCGGGC AAGGAGACGGCGGCCAAGGCGAAGAATGCCTCGGCAGTCATGGCGGCCAA GAAGCAGGCCGAGGAGGACGCCGCCGTCAAGAAAGCCCGCCTGCTCGAAG AGCTCGAGGCCGACAGCCAGAAGCGGAAAAAAGGCTTCTTCGGACTTTTC TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7058:1030..2132+

>mRNA_P-wetherbeei_contig7058.1.1 ID=mRNA_P-wetherbeei_contig7058.1.1|Name=mRNA_P-wetherbeei_contig7058.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig7058:1030..2132+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGCTGGGCCTCGTGCTCGAGGAGGATGGTGACCGCAACGTCATCGT
TGCCGAAGTCCGCTCCGGGAGCAACGCTGCGAAGTCAGGGAAAGTTAAGC
CTGGCGACAAGATTGCGTTCGTGTCGGCGACCTTCGGTGACGAGGTGTGG
AGCGCCCGGGGCGTCGGGCTCTCGCGGGTGCAGAGCGCCGTCAAGGTCCG
CCAGGGAGACTACGTTACCCTGGTGCTGGAATCGGGCAAGGAGACGGCGG
CCAAGGCGAAGAATGCCTCGGCAGTCATGGCGGCCAAGAAGCAGGCCGAG
GAGGACGCCGCCGTCAAGAAAGCCCGCCTGCTCGAAGAGCTCGAGGCCGA
CAGCCAGAAGCGGAAAAAAGGCTTCTTCGGACTTTTCTGA
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