mRNA_P-wetherbeei_contig7037.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7037.2.1
Unique NamemRNA_P-wetherbeei_contig7037.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7037.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7037contigP-wetherbeei_contig7037:2179..3213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.8356-CDS-P-wetherbeei_contig7037:2178..22651683186953.8356-CDS-P-wetherbeei_contig7037:2178..2265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7037 2179..2265 -
1683186953.846206-CDS-P-wetherbeei_contig7037:3126..32131683186953.846206-CDS-P-wetherbeei_contig7037:3126..3213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7037 3127..3213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7037.2.1prot_P-wetherbeei_contig7037.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7037 2179..3213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7037.2.1

>prot_P-wetherbeei_contig7037.2.1 ID=prot_P-wetherbeei_contig7037.2.1|Name=mRNA_P-wetherbeei_contig7037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
GVTEREAFADLHGPVVITVVCCVRGADSTIDNFGRQRLETRQQVLAVTTA
AIRGLALE
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mRNA from alignment at P-wetherbeei_contig7037:2179..3213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7037.2.1 ID=mRNA_P-wetherbeei_contig7037.2.1|Name=mRNA_P-wetherbeei_contig7037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig7037:2179..3213- (Phaeothamnion wetherbeei SAG_119_79)
GGTGTGACTGAAAGGGAGGCGTTTGCCGATCTTCATGGGCCCGTCGTCAT
CACCGTCGTTTGCTGCGTTAGAGGTGCGGATAGTACGGTAAGAAGCAATG
CGCTTCTGCATTTTGTGACACTGCAAGTAGTTGAGACTCATGTCTTCTTG
GCGAGACTGCGTGTCACAAGCCCATTCTTGTGCGACCCGCGGAAGCAATT
GGAATGATTCATCGTTCATGAGGCGTTGGCGGGCGTAGAAACCGATTGGC
GAGCTCTCGTGATATGTCGGCGTGTTGTTGTCTTCGCGCTGCCCGACTCG
TTTACCCCAACCAATTTCTCCGTGGTAGAAGAGGAGTGGATATTGCAGGG
GTTCATAGGACGACGACTCGATGGGGAGGAAGCGGGGCCGGTCACTCGGT
TCGCTGGCAGGACAATTTTGCGGGTAAATGTAAATCGAACGACGTGCCGT
ATCAGTGTTTTGGAAAAGAAGAGCGGCGACTTCCGCCACTTCGGTTTTGG
GGGCCTCTCCTACGATCGAGCCATGCGTGGCGCGTGATGTTGGCTCGAAG
ACGATGTGAGCTTCCGGTACAGCTCCCGGGTGATTTGCAAACACATCGTG
AATGACGCAACGATAAGATGTAATCCAGGAGTTGTCTCTGTAAAGGTGGT
CGCTCAGGCTCGCCACGTATATTGGGATTAACTGCTGGTTTTTCAAGGCC
TCTTCGCGATGGCCGCCGTACATGTAAAGTCGAGAATGGTTTCTGATGTC
AACTTGTTCGTGATAGGTGGCATTCGGATCGAAAATGCGGTGGTAGGCAC
GCCCTGACATGGTAAGCATTGACGGCGGCGCTGGTTCGACCCAGGTGCGG
TGAGGTTGGCGATCGAAATGAGCAGAACCGAGAGCTGTCATGGCGAATAA
ATTGTTGTACTGCCTTTGACGTTCGTAAAACTTTGGCTCTTTGTACAGAT
TGACAATTTCGGGCGGCAGCGGCTTGAGACGAGGCAACAGGTACTTGCCG
TCACGACCGCAGCAATTCGTGGTCTCGCTTTGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7037:2179..3213-

>mRNA_P-wetherbeei_contig7037.2.1 ID=mRNA_P-wetherbeei_contig7037.2.1|Name=mRNA_P-wetherbeei_contig7037.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig7037:2179..3213- (Phaeothamnion wetherbeei SAG_119_79)
GGTGTGACTGAAAGGGAGGCGTTTGCCGATCTTCATGGGCCCGTCGTCAT
CACCGTCGTTTGCTGCGTTAGAGGTGCGGATAGTACGATTGACAATTTCG
GGCGGCAGCGGCTTGAGACGAGGCAACAGGTACTTGCCGTCACGACCGCA
GCAATTCGTGGTCTCGCTTTGGAA
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