mRNA_P-wetherbeei_contig7037.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7037.1.1
Unique NamemRNA_P-wetherbeei_contig7037.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7037.1.1 vs. uniprot
Match: A0A346RNV1_9ABAC (p87/vp80 n=1 Tax=Cryptophlebia peltastica nucleopolyhedrovirus TaxID=2304025 RepID=A0A346RNV1_9ABAC)

HSP 1 Score: 61.2 bits (147), Expect = 6.140e-9
Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    1 VAGDGNCFFRSVAHHVFGNDALHMRVRDEVVRFAVANWFHPSLSLHTFFDDSDAVSGPEDYARWMGQATEYGGETEVAVVRQLY 252
            +  DG C FR++A   +G+  +H+RVRDE+V++ + NW     S +T  + ++      +Y ++M Q   YG  TE+     +Y
Sbjct:   32 IGADGACLFRAIALFKYGDQNMHLRVRDEIVKYVIENW--DDFSNYTCDETTNCYKSIYEYEKFMSQPQTYGSTTELYAASIIY 113
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BLAST of mRNA_P-wetherbeei_contig7037.1.1 vs. uniprot
Match: A0A8J4UX53_9MYCE (OTU domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UX53_9MYCE)

HSP 1 Score: 58.2 bits (139), Expect = 7.140e-8
Identity = 31/90 (34.44%), Postives = 44/90 (48.89%), Query Frame = 1 
Query:    1 VAGDGNCFFRSVAHHVFGNDALHMRVRDEVVRFAVANWFHPSLSLHTFFDDSDAVSGPEDYARWMGQATEYGGETEVAVVRQLYNRPILI 270
            VAGDGNC FRS+A  +  N   HM+ R  + +F +AN       +   F D +     E+Y   M + T +GG  E+     LY+  I I
Sbjct:   64 VAGDGNCLFRSIADQLEDNPNSHMKYRQAICKFLIAN-----KEMFAPFVDDEEHDSYEEYVEEMQEDTTWGGNIEIQAASLLYSVNITI 148
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BLAST of mRNA_P-wetherbeei_contig7037.1.1 vs. uniprot
Match: A0A5C3N094_9AGAM (OTU domain-containing protein n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3N094_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 3.800e-5
Identity = 23/88 (26.14%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:    7 GDGNCFFRSVAHHVFGNDALHMRVRDEVVRFAVANWFHPSLSLHTFFDDSDAVSGPEDYARWMGQATEYGGETEVAVVRQLYNRPILI 270
            GDGNC FR+++  ++G +A H+++R ++      NW       +  F + +   G + + R M Q   YGG  E++    +  R + +
Sbjct:   55 GDGNCLFRALSDQLYGTEAYHLQLRQQI-----CNWIESHKDRYAPFCEDER--GLDTHLRCMRQPATYGGHMELSAFAHMTKRDVKV 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7037.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A346RNV1_9ABAC6.140e-930.95p87/vp80 n=1 Tax=Cryptophlebia peltastica nucleopo... [more]
A0A8J4UX53_9MYCE7.140e-834.44OTU domain-containing protein n=1 Tax=Polysphondyl... [more]
A0A5C3N094_9AGAM3.800e-526.14OTU domain-containing protein n=1 Tax=Heliocybe su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7037contigP-wetherbeei_contig7037:1030..1302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6183.Smp_093950.1
Preferred nameOTUD5
PFAMsOTU
Model size273
Max annot lvl33208|Metazoa
KEGG koko:K12655
KEGG Pathwayko04622,map04622
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001775,GO:0001816,GO:0001817,GO:0001818,GO:0002237,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002286,GO:0002287,GO:0002292,GO:0002293,GO:0002294,GO:0002295,GO:0002360,GO:0002363,GO:0002366,GO:0002376,GO:0002460,GO:0002520,GO:0002521,GO:0002682,GO:0002790,GO:0002791,GO:0002792,GO:0002819,GO:0002822,GO:0003006,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006955,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009306,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009987,GO:0010033,GO:0010498,GO:0015031,GO:0015833,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030217,GO:0031647,GO:0032479,GO:0032480,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032625,GO:0032638,GO:0032660,GO:0032700,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033993,GO:0035710,GO:0036037,GO:0036211,GO:0036459,GO:0042093,GO:0042110,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043367,GO:0043368,GO:0043369,GO:0043373,GO:0043374,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045058,GO:0045165,GO:0045184,GO:0045321,GO:0046631,GO:0046632,GO:0046649,GO:0046903,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050663,GO:0050707,GO:0050708,GO:0050709,GO:0050710,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051239,GO:0051241,GO:0051603,GO:0051704,GO:0051707,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070201,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071702,GO:0071704,GO:0071705,GO:0072538,GO:0072539,GO:0072540,GO:0072607,GO:0072619,GO:0090087,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903530,GO:1903531,GO:1904950,GO:1905076,GO:1905077,GO:1990380,GO:2000316
Exons1
Evalue7.39e-10
EggNOG OGsKOG2605@1|root,KOG2605@2759|Eukaryota,39SEE@33154|Opisthokonta,3BA0Q@33208|Metazoa,3CS26@33213|Bilateria
EC3.4.19.12
Descriptionprotein K63-linked deubiquitination
Cds size273
COG categoryOT
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.876065-CDS-P-wetherbeei_contig7037:1029..13021683186953.876065-CDS-P-wetherbeei_contig7037:1029..1302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7037 1030..1302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7037.1.1prot_P-wetherbeei_contig7037.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7037 1030..1302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7037.1.1

>prot_P-wetherbeei_contig7037.1.1 ID=prot_P-wetherbeei_contig7037.1.1|Name=mRNA_P-wetherbeei_contig7037.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
VAGDGNCFFRSVAHHVFGNDALHMRVRDEVVRFAVANWFHPSLSLHTFFD
DSDAVSGPEDYARWMGQATEYGGETEVAVVRQLYNRPILIW
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mRNA from alignment at P-wetherbeei_contig7037:1030..1302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7037.1.1 ID=mRNA_P-wetherbeei_contig7037.1.1|Name=mRNA_P-wetherbeei_contig7037.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig7037:1030..1302+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGCAGGAGACGGAAATTGCTTTTTTCGTAGCGTCGCGCATCATGTTTT
CGGGAACGACGCCCTGCATATGCGGGTTCGCGACGAGGTCGTGCGGTTTG
CGGTGGCAAATTGGTTTCATCCTTCGTTGTCTCTGCACACATTTTTCGAT
GATTCTGACGCGGTGTCGGGTCCGGAAGATTATGCGCGATGGATGGGGCA
GGCAACGGAGTATGGCGGAGAGACGGAGGTCGCTGTCGTCAGGCAGCTGT
ACAACCGACCCATTCTCATATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7037:1030..1302+

>mRNA_P-wetherbeei_contig7037.1.1 ID=mRNA_P-wetherbeei_contig7037.1.1|Name=mRNA_P-wetherbeei_contig7037.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig7037:1030..1302+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGCAGGAGACGGAAATTGCTTTTTTCGTAGCGTCGCGCATCATGTTTT
CGGGAACGACGCCCTGCATATGCGGGTTCGCGACGAGGTCGTGCGGTTTG
CGGTGGCAAATTGGTTTCATCCTTCGTTGTCTCTGCACACATTTTTCGAT
GATTCTGACGCGGTGTCGGGTCCGGAAGATTATGCGCGATGGATGGGGCA
GGCAACGGAGTATGGCGGAGAGACGGAGGTCGCTGTCGTCAGGCAGCTGT
ACAACCGACCCATTCTCATATGG
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