mRNA_P-wetherbeei_contig7023.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7023.1.1
Unique NamemRNA_P-wetherbeei_contig7023.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7023contigP-wetherbeei_contig7023:915..2278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size633
Hectar predicted targeting categorysignal peptide
Exons2
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186953.0200984-CDS-P-wetherbeei_contig7023:914..13971683186953.0200984-CDS-P-wetherbeei_contig7023:914..1397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7023 915..1397 +
1683186953.029789-CDS-P-wetherbeei_contig7023:2128..22781683186953.029789-CDS-P-wetherbeei_contig7023:2128..2278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7023 2129..2278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7023.1.1prot_P-wetherbeei_contig7023.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7023 915..2278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7023.1.1

>prot_P-wetherbeei_contig7023.1.1 ID=prot_P-wetherbeei_contig7023.1.1|Name=mRNA_P-wetherbeei_contig7023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=211bp
GLVALSVAGALLVTNVGITCVAESCPLLENLCVKRCSSVGDYAVAAVAAG
CPRLRRLDLELCIAVGDGGLAALGRHSARLSELVLCHCQRISDHGLAALA
RGCPALRMLDLTASYLVTFDAPAPDATLMPLSGLLALDVRDSSRVGDEEL
GAIACCAPNLLIQRLGVEGCPRITDRGLAALARGGRDLRTLGLNDLRHIT
DRGVAALASKC
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mRNA from alignment at P-wetherbeei_contig7023:915..2278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7023.1.1 ID=mRNA_P-wetherbeei_contig7023.1.1|Name=mRNA_P-wetherbeei_contig7023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1364bp|location=Sequence derived from alignment at P-wetherbeei_contig7023:915..2278+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCGTGGCGCTCAGCGTCGCGGGCGCCCTCCTCGTCACCAACGTCGG
CATCACGTGCGTCGCCGAGTCCTGCCCGCTCCTCGAGAACCTCTGCGTCA
AACGCTGCAGCTCAGTCGGCGACTACGCCGTTGCCGCCGTCGCCGCCGGC
TGCCCGCGGCTCCGGCGCCTTGACCTGGAACTCTGCATCGCCGTCGGCGA
CGGCGGCCTTGCCGCCCTCGGGCGCCACTCCGCGCGTCTCTCCGAGCTGG
TTCTATGCCACTGCCAGCGCATCAGCGACCACGGCCTCGCTGCCCTGGCC
CGTGGCTGCCCAGCGCTGCGAATGCTGGACCTGACTGCGTCGTACTTGGT
GACGTTCGATGCGCCCGCGCCGGACGCCACGTTGATGCCGCTGTCCGGCC
TGCTCGCGCTCGACGTGCGCGACAGCTCGCGTGTTGGGGACGAGGAGCTC
GGCGCCATCGCTTGCTGCGCGCCCAACCTCCTGGTGCGTGCATGCAATTG
ATTATCTCTCCTGACATGTTCTCTTTGGTTCCCTTTTTCGCATTTCCTTT
TGTGTGGTGCGAGATCAACGTTGCGTGCCAAAGTGCCTCGGCGCGGATCG
CATGCCTCGCTTTTGCTGCGTCCATCGGATCTGATGTCTCTCAATCTTTA
ACCAAGCGTCTTTCTCCGGCGCTGTCTCTCTCTGCCTGTCTGCTGCGCGC
CCTTCCTCTCCTCCCTGATTTGCCTCATTTGCCCGCTTTTTGTGCAACTC
GCACGCATGCCACCACTGGCAGTGGTTCAGCGCGCAGGGCTGCTGCCAGG
TGACAGACATTGGGGTACGGTGGCTGGCGGAGGGCTGCCGCTTCATCGTG
GACCTCTTTCTCAACGGCTGCGACCGTCTCTCCGACGCCGCTCTCACCGC
CATCTCCGACTGCCTTCGGGTGAGAGAAAGCGAGAGCACTTCCTTGTTGC
CGCCAGAGGAATTCATGAAATGCTGATTCTGAGGGATCTAGTCACAGTGC
CTCCCTCCCGGCACGGACGGTTCCATCGCGCGCTATCCATGGAGACGAGG
AATGTGAGCTGAATGCTGCCTTGTCTTTCCTCCACCATGCATTCCCGCTT
CCCTCTTTACCGCCGCCGCTGCTACCGCCGCCACCGTTTCCCGCCGCCCG
CCGCCCGCCGCCCGCCGCCCGCCGCCCGCTGCCGGCCGTCCGCCGCGCTG
TTGTCGTTCCGCAGATTCAACGACTCGGCGTGGAAGGGTGCCCGAGGATC
ACGGACCGCGGGTTGGCGGCGCTCGCCCGGGGTGGCCGCGACCTCCGCAC
GCTGGGGCTCAACGACTTGCGGCACATCACCGACCGCGGGGTGGCGGCGC
TAGCGTCGAAGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7023:915..2278+

>mRNA_P-wetherbeei_contig7023.1.1 ID=mRNA_P-wetherbeei_contig7023.1.1|Name=mRNA_P-wetherbeei_contig7023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=633bp|location=Sequence derived from alignment at P-wetherbeei_contig7023:915..2278+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCGTGGCGCTCAGCGTCGCGGGCGCCCTCCTCGTCACCAACGTCGG
CATCACGTGCGTCGCCGAGTCCTGCCCGCTCCTCGAGAACCTCTGCGTCA
AACGCTGCAGCTCAGTCGGCGACTACGCCGTTGCCGCCGTCGCCGCCGGC
TGCCCGCGGCTCCGGCGCCTTGACCTGGAACTCTGCATCGCCGTCGGCGA
CGGCGGCCTTGCCGCCCTCGGGCGCCACTCCGCGCGTCTCTCCGAGCTGG
TTCTATGCCACTGCCAGCGCATCAGCGACCACGGCCTCGCTGCCCTGGCC
CGTGGCTGCCCAGCGCTGCGAATGCTGGACCTGACTGCGTCGTACTTGGT
GACGTTCGATGCGCCCGCGCCGGACGCCACGTTGATGCCGCTGTCCGGCC
TGCTCGCGCTCGACGTGCGCGACAGCTCGCGTGTTGGGGACGAGGAGCTC
GGCGCCATCGCTTGCTGCGCGCCCAACCTCCTGATTCAACGACTCGGCGT
GGAAGGGTGCCCGAGGATCACGGACCGCGGGTTGGCGGCGCTCGCCCGGG
GTGGCCGCGACCTCCGCACGCTGGGGCTCAACGACTTGCGGCACATCACC
GACCGCGGGGTGGCGGCGCTAGCGTCGAAGTGC
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