mRNA_P-wetherbeei_contig7017.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7017.2.1
Unique NamemRNA_P-wetherbeei_contig7017.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7017.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7017contigP-wetherbeei_contig7017:714..3108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2397
Hectar predicted targeting categoryother localisation
Exons1
Cds size2370
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.504252-CDS-P-wetherbeei_contig7017:713..30831683186952.504252-CDS-P-wetherbeei_contig7017:713..3083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7017 714..3083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186952.5144217-UTR-P-wetherbeei_contig7017:3083..31081683186952.5144217-UTR-P-wetherbeei_contig7017:3083..3108Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7017 3084..3108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7017.2.1prot_P-wetherbeei_contig7017.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7017 714..3083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7017.2.1

>prot_P-wetherbeei_contig7017.2.1 ID=prot_P-wetherbeei_contig7017.2.1|Name=mRNA_P-wetherbeei_contig7017.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=790bp
MAAPATAAAAAVPAGMAATAGSMPPPPLPVLRASATMSTRSEAAAALLNL
QETFSVTSLLASLAAEENTRAPCVDSGNFGGGVLASGGSPAGHAADGGVE
QSGIPTRNNDSPAAAAGARNDDGADNGGTRDSGNGGTRNGGTGGMEPGSG
GSGITSRLGNGHTIAVSAQSLQRVASLFGPATSGGALNEMVSGRTASPPH
ISAGEAAATTGSLSSAAAIRLEPVESPNRFTDAAVADAAAASGIAAAETS
GGAGTHSKAVTPEKLQLIWEVASSSLYAAAGSPRGGSHGELRFSKGRGRA
VEATGRALPRLGDLADTGNSSGGGSCSGGGGSSSGGGSSSSGCGGSSVCG
GSGVSLTFTRGRDCKVKVAEEARALALLGELANGDGSGAAGVAGAVCRSA
AAENLANGARPTFEAAAAEAANGRLATHQAAAAPAAAAAAVAASAVSGGG
ALRVVGAAAPERPALADGDGAGGCGRLSFSTGRGRKVQATEAAVAQARSL
FGDIAASGSGGGSSGGGGSGRSGGGNSRDGGGDGGGCGGAGIVLSSADAG
GCRSSYTSSGPKVAGRAAPGNKENEAASLSTGQASPDAAAAPVTSPVGRV
AGKRPPPGSPAANHRSSLLRRRSSSGAAASAPAGTAPAAAAALAATAVQP
PAAKAEEAAVAATPARQGMVTRGLGGGAQPAAFSGGLRKRKREEPPTLQG
VPDMAAAATAVAAVVAAAAAMPSSSPMLSASSASSASSGSSGSPAAGSPA
SPPPPPLLLKTPINPYSRPLPVSGRGGGARRSPPYQLTER
back to top

mRNA from alignment at P-wetherbeei_contig7017:714..3108-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7017.2.1 ID=mRNA_P-wetherbeei_contig7017.2.1|Name=mRNA_P-wetherbeei_contig7017.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2395bp|location=Sequence derived from alignment at P-wetherbeei_contig7017:714..3108- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCACCAGCTGCGGCGGCGATGGCGGCACCAGCGACCGCAGCAG
CCGCGGCAGTTCCGGCTGGAATGGCAGCGACAGCAGGAAGCATGCCTCCG
CCACCTCTGCCGGTGCTGCGCGCGTCGGCAACGATGTCCACCCGGTCCGA
AGCGGCTGCGGCGCTGCTGAACCTGCAGGAGACATTCTCTGTGACAAGTC
TGCTGGCGTCGCTGGCTGCTGAGGAGAACACTAGGGCGCCCTGCGTTGAC
TCCGGCAATTTCGGTGGCGGCGTTTTGGCGAGCGGAGGATCTCCTGCTGG
CCACGCAGCGGACGGCGGCGTGGAGCAGTCAGGCATCCCAACGAGGAACA
ACGACTCTCCTGCTGCGGCAGCTGGTGCTCGGAACGACGACGGCGCCGAC
AACGGTGGCACCAGGGATAGCGGTAACGGCGGTACCAGGAACGGCGGCAC
TGGCGGGATGGAACCGGGTTCTGGCGGATCTGGCATCACTTCAAGGCTCG
GCAATGGGCATACCATCGCCGTGTCAGCGCAGAGCCTTCAGCGCGTTGCG
TCGCTGTTTGGTCCGGCGACCTCTGGAGGGGCTTTGAATGAGATGGTCAG
CGGCCGCACTGCTTCCCCTCCGCACATCTCGGCAGGAGAGGCCGCTGCTA
CAACAGGAAGTCTTAGCTCTGCAGCAGCCATTCGCCTGGAGCCGGTGGAG
TCACCAAATAGATTCACCGACGCTGCTGTCGCCGACGCTGCTGCTGCCTC
CGGTATTGCCGCTGCAGAAACTTCTGGCGGCGCCGGTACTCATTCAAAGG
CCGTTACTCCTGAGAAGCTGCAACTGATTTGGGAAGTCGCGAGCTCGTCT
CTCTACGCAGCGGCCGGCAGCCCTCGGGGCGGCAGCCATGGGGAGCTCCG
CTTCTCTAAGGGCAGGGGGCGTGCTGTAGAAGCCACGGGGCGCGCGCTGC
CTCGGCTGGGCGACCTGGCCGACACTGGCAACAGTTCCGGTGGTGGCAGC
TGCAGCGGTGGCGGCGGCAGCAGCAGCGGTGGCGGCAGTAGCAGCAGCGG
TTGCGGCGGCAGCAGTGTTTGCGGCGGCAGCGGCGTGTCGCTCACCTTCA
CAAGAGGCAGAGATTGCAAGGTCAAGGTGGCCGAGGAGGCTAGAGCCTTG
GCCCTGTTGGGAGAACTGGCTAATGGCGACGGCAGCGGCGCCGCCGGGGT
CGCGGGCGCTGTTTGCCGAAGCGCTGCTGCGGAGAACCTCGCCAACGGTG
CGCGGCCGACGTTCGAAGCTGCTGCCGCTGAAGCGGCGAATGGCCGGCTT
GCGACACACCAAGCCGCCGCCGCTCCTGCTGCCGCTGCTGCTGCGGTCGC
CGCGTCGGCGGTTAGTGGCGGAGGCGCTTTGCGGGTGGTGGGTGCGGCGG
CTCCTGAGAGGCCAGCTTTGGCGGACGGAGACGGTGCTGGCGGCTGCGGC
AGGCTCTCCTTCTCCACGGGCAGAGGGCGCAAGGTGCAGGCGACTGAGGC
GGCCGTGGCTCAGGCGCGCTCCCTGTTTGGCGACATTGCAGCATCCGGCA
GCGGCGGCGGCAGCAGCGGGGGCGGTGGCAGCGGCAGAAGCGGCGGCGGC
AATAGTAGGGATGGCGGCGGCGACGGCGGCGGCTGTGGTGGTGCTGGCAT
CGTTTTAAGCAGCGCCGATGCTGGTGGCTGCAGAAGCAGCTACACCAGCA
GCGGACCGAAAGTCGCAGGCCGCGCCGCACCCGGGAACAAGGAGAACGAA
GCTGCGAGTTTAAGCACTGGTCAAGCAAGCCCAGATGCCGCTGCCGCACC
GGTAACCAGCCCGGTAGGTCGCGTTGCCGGCAAGCGGCCGCCACCCGGAA
GCCCGGCCGCAAACCACCGGTCGAGCCTGTTGCGTCGGCGGTCATCGTCT
GGTGCTGCCGCATCAGCTCCAGCTGGAACCGCGCCCGCAGCTGCTGCCGC
ACTGGCAGCTACGGCTGTGCAGCCGCCGGCGGCGAAGGCAGAAGAGGCGG
CGGTGGCGGCGACGCCAGCCAGGCAGGGAATGGTCACGCGCGGTCTGGGC
GGCGGCGCGCAGCCCGCGGCATTTTCGGGCGGCCTACGAAAGCGCAAGCG
GGAGGAACCTCCTACATTGCAAGGGGTGCCGGATATGGCGGCGGCAGCAA
CAGCGGTGGCAGCAGTGGTAGCGGCGGCCGCAGCGATGCCCTCGTCGTCG
CCGATGCTTTCAGCGTCCTCGGCGTCCTCGGCGTCCTCGGGGTCCTCGGG
GTCTCCGGCGGCGGGGTCTCCGGCTTCGCCGCCGCCGCCACCGCTGCTGC
TGAAGACGCCCATCAACCCGTACAGCCGGCCGCTGCCGGTGTCGGGCCGC
GGCGGCGGCGCCCGGCGGTCGCCGCCGTACCAGCTGACCGAGCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7017:714..3108-

>mRNA_P-wetherbeei_contig7017.2.1 ID=mRNA_P-wetherbeei_contig7017.2.1|Name=mRNA_P-wetherbeei_contig7017.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2370bp|location=Sequence derived from alignment at P-wetherbeei_contig7017:714..3108- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCACCAGCGACCGCAGCAGCCGCGGCAGTTCCGGCTGGAATGGC
AGCGACAGCAGGAAGCATGCCTCCGCCACCTCTGCCGGTGCTGCGCGCGT
CGGCAACGATGTCCACCCGGTCCGAAGCGGCTGCGGCGCTGCTGAACCTG
CAGGAGACATTCTCTGTGACAAGTCTGCTGGCGTCGCTGGCTGCTGAGGA
GAACACTAGGGCGCCCTGCGTTGACTCCGGCAATTTCGGTGGCGGCGTTT
TGGCGAGCGGAGGATCTCCTGCTGGCCACGCAGCGGACGGCGGCGTGGAG
CAGTCAGGCATCCCAACGAGGAACAACGACTCTCCTGCTGCGGCAGCTGG
TGCTCGGAACGACGACGGCGCCGACAACGGTGGCACCAGGGATAGCGGTA
ACGGCGGTACCAGGAACGGCGGCACTGGCGGGATGGAACCGGGTTCTGGC
GGATCTGGCATCACTTCAAGGCTCGGCAATGGGCATACCATCGCCGTGTC
AGCGCAGAGCCTTCAGCGCGTTGCGTCGCTGTTTGGTCCGGCGACCTCTG
GAGGGGCTTTGAATGAGATGGTCAGCGGCCGCACTGCTTCCCCTCCGCAC
ATCTCGGCAGGAGAGGCCGCTGCTACAACAGGAAGTCTTAGCTCTGCAGC
AGCCATTCGCCTGGAGCCGGTGGAGTCACCAAATAGATTCACCGACGCTG
CTGTCGCCGACGCTGCTGCTGCCTCCGGTATTGCCGCTGCAGAAACTTCT
GGCGGCGCCGGTACTCATTCAAAGGCCGTTACTCCTGAGAAGCTGCAACT
GATTTGGGAAGTCGCGAGCTCGTCTCTCTACGCAGCGGCCGGCAGCCCTC
GGGGCGGCAGCCATGGGGAGCTCCGCTTCTCTAAGGGCAGGGGGCGTGCT
GTAGAAGCCACGGGGCGCGCGCTGCCTCGGCTGGGCGACCTGGCCGACAC
TGGCAACAGTTCCGGTGGTGGCAGCTGCAGCGGTGGCGGCGGCAGCAGCA
GCGGTGGCGGCAGTAGCAGCAGCGGTTGCGGCGGCAGCAGTGTTTGCGGC
GGCAGCGGCGTGTCGCTCACCTTCACAAGAGGCAGAGATTGCAAGGTCAA
GGTGGCCGAGGAGGCTAGAGCCTTGGCCCTGTTGGGAGAACTGGCTAATG
GCGACGGCAGCGGCGCCGCCGGGGTCGCGGGCGCTGTTTGCCGAAGCGCT
GCTGCGGAGAACCTCGCCAACGGTGCGCGGCCGACGTTCGAAGCTGCTGC
CGCTGAAGCGGCGAATGGCCGGCTTGCGACACACCAAGCCGCCGCCGCTC
CTGCTGCCGCTGCTGCTGCGGTCGCCGCGTCGGCGGTTAGTGGCGGAGGC
GCTTTGCGGGTGGTGGGTGCGGCGGCTCCTGAGAGGCCAGCTTTGGCGGA
CGGAGACGGTGCTGGCGGCTGCGGCAGGCTCTCCTTCTCCACGGGCAGAG
GGCGCAAGGTGCAGGCGACTGAGGCGGCCGTGGCTCAGGCGCGCTCCCTG
TTTGGCGACATTGCAGCATCCGGCAGCGGCGGCGGCAGCAGCGGGGGCGG
TGGCAGCGGCAGAAGCGGCGGCGGCAATAGTAGGGATGGCGGCGGCGACG
GCGGCGGCTGTGGTGGTGCTGGCATCGTTTTAAGCAGCGCCGATGCTGGT
GGCTGCAGAAGCAGCTACACCAGCAGCGGACCGAAAGTCGCAGGCCGCGC
CGCACCCGGGAACAAGGAGAACGAAGCTGCGAGTTTAAGCACTGGTCAAG
CAAGCCCAGATGCCGCTGCCGCACCGGTAACCAGCCCGGTAGGTCGCGTT
GCCGGCAAGCGGCCGCCACCCGGAAGCCCGGCCGCAAACCACCGGTCGAG
CCTGTTGCGTCGGCGGTCATCGTCTGGTGCTGCCGCATCAGCTCCAGCTG
GAACCGCGCCCGCAGCTGCTGCCGCACTGGCAGCTACGGCTGTGCAGCCG
CCGGCGGCGAAGGCAGAAGAGGCGGCGGTGGCGGCGACGCCAGCCAGGCA
GGGAATGGTCACGCGCGGTCTGGGCGGCGGCGCGCAGCCCGCGGCATTTT
CGGGCGGCCTACGAAAGCGCAAGCGGGAGGAACCTCCTACATTGCAAGGG
GTGCCGGATATGGCGGCGGCAGCAACAGCGGTGGCAGCAGTGGTAGCGGC
GGCCGCAGCGATGCCCTCGTCGTCGCCGATGCTTTCAGCGTCCTCGGCGT
CCTCGGCGTCCTCGGGGTCCTCGGGGTCTCCGGCGGCGGGGTCTCCGGCT
TCGCCGCCGCCGCCACCGCTGCTGCTGAAGACGCCCATCAACCCGTACAG
CCGGCCGCTGCCGGTGTCGGGCCGCGGCGGCGGCGCCCGGCGGTCGCCGC
CGTACCAGCTGACCGAGCGC
back to top